data_8VH5
#
_model_server_result.job_id            CzwBtUSi9n1_6UuG0m0hyA 
_model_server_result.datetime_utc      '2024-10-09 23:27:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    8VH5 
#
_exptl.entry_id    8VH5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VH5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 21 B THR 56 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc2 G MG MG . B MG 301 1_555 H O1A GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc3 G MG MG . B MG 301 1_555 H O2B GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc4 G MG MG . B MG 301 1_555 H O3A GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc5 G MG MG . B MG 301 1_555 H O2A GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc6 G MG MG . B MG 301 1_555 H O2G GNP . B GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc7 D OG1 THR 21 D THR 56 1_555 K MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc8 K MG MG . D MG 301 1_555 L O1A GNP . D GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc9 K MG MG . D MG 301 1_555 L O2A GNP . D GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc10 K MG MG . D MG 301 1_555 L O2G GNP . D GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc11 K MG MG . D MG 301 1_555 L O2B GNP . D GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc12 K MG MG . D MG 301 1_555 L O3A GNP . D GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 224 n n 
PG O2G GNP sing 225 n n 
PG O3G GNP sing 226 n n 
PG N3B GNP sing 227 n n 
O2G HOG2 GNP sing 228 n n 
O3G HOG3 GNP sing 229 n n 
N3B PB GNP sing 230 n n 
N3B HNB3 GNP sing 231 n n 
PB O1B GNP doub 232 n n 
PB O2B GNP sing 233 n n 
PB O3A GNP sing 234 n n 
O2B HOB2 GNP sing 235 n n 
O3A PA GNP sing 236 n n 
PA O1A GNP doub 237 n n 
PA O2A GNP sing 238 n n 
PA O5' GNP sing 239 n n 
O2A HOA2 GNP sing 240 n n 
O5' C5' GNP sing 241 n n 
C5' C4' GNP sing 242 n n 
C5' "H5'2" GNP sing 243 n n 
C5' "H5'1" GNP sing 244 n n 
C4' O4' GNP sing 245 n n 
C4' C3' GNP sing 246 n n 
C4' H4' GNP sing 247 n n 
O4' C1' GNP sing 248 n n 
C3' O3' GNP sing 249 n n 
C3' C2' GNP sing 250 n n 
C3' H3' GNP sing 251 n n 
O3' HO3' GNP sing 252 n n 
C2' O2' GNP sing 253 n n 
C2' C1' GNP sing 254 n n 
C2' H2' GNP sing 255 n n 
O2' HO2' GNP sing 256 n n 
C1' N9 GNP sing 257 n n 
C1' H1' GNP sing 258 n n 
N9 C8 GNP sing 259 n y 
N9 C4 GNP sing 260 n y 
C8 N7 GNP doub 261 n y 
C8 H8 GNP sing 262 n n 
N7 C5 GNP sing 263 n y 
C5 C6 GNP sing 264 n y 
C5 C4 GNP doub 265 n y 
C6 O6 GNP doub 266 n n 
C6 N1 GNP sing 267 n y 
N1 C2 GNP sing 268 n y 
N1 HN1 GNP sing 269 n n 
C2 N2 GNP sing 270 n n 
C2 N3 GNP doub 271 n y 
N2 HN21 GNP sing 272 n n 
N2 HN22 GNP sing 273 n n 
N3 C4 GNP sing 274 n y 
#
_atom_sites.entry_id                     8VH5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GDP A 1 2601 2601 GDP GDP . 
F 4 ANP A 1 2602 2602 ANP ANP . 
G 5 MG B 1 301 1 MG MG . 
H 6 GNP B 1 302 210 GNP GNP . 
I 3 GDP C 1 2601 2601 GDP GDP . 
J 4 ANP C 1 2602 2602 ANP ANP . 
K 5 MG D 1 301 1 MG MG . 
L 6 GNP D 1 302 210 GNP GNP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . H 6 256.149 285.146 194.911 1 126.74 ? PG GNP 302 B 1 
HETATM 2 O O1G GNP . . . H 6 256.633 283.785 194.527 1 126.74 ? O1G GNP 302 B 1 
HETATM 3 O O2G GNP . . . H 6 257.147 286.207 194.462 1 126.74 ? O2G GNP 302 B 1 
HETATM 4 O O3G GNP . . . H 6 256.071 285.2 196.45 1 126.74 ? O3G GNP 302 B 1 
HETATM 5 N N3B GNP . . . H 6 254.629 285.431 194.213 1 126.74 ? N3B GNP 302 B 1 
HETATM 6 P PB GNP . . . H 6 253.54 286.347 195.005 1 126.74 ? PB GNP 302 B 1 
HETATM 7 O O1B GNP . . . H 6 252.544 285.447 195.67 1 126.74 ? O1B GNP 302 B 1 
HETATM 8 O O2B GNP . . . H 6 254.188 287.214 196.047 1 126.74 ? O2B GNP 302 B 1 
HETATM 9 O O3A GNP . . . H 6 252.839 287.307 193.891 1 126.74 ? O3A GNP 302 B 1 
HETATM 10 P PA GNP . . . H 6 253.764 288.31 193.093 1 126.74 ? PA GNP 302 B 1 
HETATM 11 O O1A GNP . . . H 6 254.979 287.505 192.645 1 126.74 ? O1A GNP 302 B 1 
HETATM 12 O O2A GNP . . . H 6 254.071 289.501 193.893 1 126.74 ? O2A GNP 302 B 1 
HETATM 13 O O5' GNP . . . H 6 252.894 288.683 191.848 1 126.74 ? O5' GNP 302 B 1 
HETATM 14 C C5' GNP . . . H 6 251.677 287.971 191.551 1 126.74 ? C5' GNP 302 B 1 
HETATM 15 C C4' GNP . . . H 6 250.832 288.796 190.613 1 126.74 ? C4' GNP 302 B 1 
HETATM 16 O O4' GNP . . . H 6 249.632 289.215 191.288 1 126.74 ? O4' GNP 302 B 1 
HETATM 17 C C3' GNP . . . H 6 251.463 290.091 190.126 1 126.74 ? C3' GNP 302 B 1 
HETATM 18 O O3' GNP . . . H 6 252.304 289.844 189.007 1 126.74 ? O3' GNP 302 B 1 
HETATM 19 C C2' GNP . . . H 6 250.238 290.923 189.738 1 126.74 ? C2' GNP 302 B 1 
HETATM 20 O O2' GNP . . . H 6 249.826 290.661 188.403 1 126.74 ? O2' GNP 302 B 1 
HETATM 21 C C1' GNP . . . H 6 249.174 290.433 190.729 1 126.74 ? C1' GNP 302 B 1 
HETATM 22 N N9 GNP . . . H 6 248.923 291.377 191.825 1 126.74 ? N9 GNP 302 B 1 
HETATM 23 C C8 GNP . . . H 6 249.628 291.502 192.988 1 126.74 ? C8 GNP 302 B 1 
HETATM 24 N N7 GNP . . . H 6 249.161 292.441 193.776 1 126.74 ? N7 GNP 302 B 1 
HETATM 25 C C5 GNP . . . H 6 248.083 292.962 193.082 1 126.74 ? C5 GNP 302 B 1 
HETATM 26 C C6 GNP . . . H 6 247.157 294.019 193.418 1 126.74 ? C6 GNP 302 B 1 
HETATM 27 O O6 GNP . . . H 6 247.139 294.702 194.435 1 126.74 ? O6 GNP 302 B 1 
HETATM 28 N N1 GNP . . . H 6 246.225 294.22 192.424 1 126.74 ? N1 GNP 302 B 1 
HETATM 29 C C2 GNP . . . H 6 246.152 293.511 191.257 1 126.74 ? C2 GNP 302 B 1 
HETATM 30 N N2 GNP . . . H 6 245.175 293.84 190.412 1 126.74 ? N2 GNP 302 B 1 
HETATM 31 N N3 GNP . . . H 6 246.997 292.536 190.935 1 126.74 ? N3 GNP 302 B 1 
HETATM 32 C C4 GNP . . . H 6 247.926 292.316 191.882 1 126.74 ? C4 GNP 302 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#