data_8VHC # _model_server_result.job_id VTnpzCo5rqffyBGnjP7F6g _model_server_result.datetime_utc '2024-11-08 18:58:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vhc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8VHC # _exptl.entry_id 8VHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VHC _cell.length_a 82.884 _cell.length_b 82.884 _cell.length_c 303.926 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8VHC _atom_sites.fract_transf_matrix[1][1] 0.012065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 502 GOL GOL . D 3 NDP A 1 502 503 NDP NDP . E 2 GOL B 1 501 502 GOL GOL . F 3 NDP B 1 502 503 NDP NDP . G 4 SO4 B 1 503 2 SO4 SO4 . H 4 SO4 B 1 504 4 SO4 SO4 . I 5 HOH A 1 601 18 HOH HOH . I 5 HOH A 2 602 68 HOH HOH . I 5 HOH A 3 603 49 HOH HOH . I 5 HOH A 4 604 36 HOH HOH . I 5 HOH A 5 605 65 HOH HOH . I 5 HOH A 6 606 3 HOH HOH . I 5 HOH A 7 607 22 HOH HOH . I 5 HOH A 8 608 9 HOH HOH . I 5 HOH A 9 609 21 HOH HOH . I 5 HOH A 10 610 11 HOH HOH . I 5 HOH A 11 611 60 HOH HOH . I 5 HOH A 12 612 24 HOH HOH . I 5 HOH A 13 613 8 HOH HOH . I 5 HOH A 14 614 35 HOH HOH . I 5 HOH A 15 615 72 HOH HOH . I 5 HOH A 16 616 17 HOH HOH . I 5 HOH A 17 617 57 HOH HOH . I 5 HOH A 18 618 33 HOH HOH . I 5 HOH A 19 619 2 HOH HOH . I 5 HOH A 20 620 38 HOH HOH . I 5 HOH A 21 621 16 HOH HOH . I 5 HOH A 22 622 32 HOH HOH . I 5 HOH A 23 623 42 HOH HOH . I 5 HOH A 24 624 14 HOH HOH . I 5 HOH A 25 625 19 HOH HOH . I 5 HOH A 26 626 40 HOH HOH . I 5 HOH A 27 627 15 HOH HOH . I 5 HOH A 28 628 23 HOH HOH . I 5 HOH A 29 629 48 HOH HOH . I 5 HOH A 30 630 66 HOH HOH . I 5 HOH A 31 631 25 HOH HOH . I 5 HOH A 32 632 59 HOH HOH . I 5 HOH A 33 633 69 HOH HOH . I 5 HOH A 34 634 62 HOH HOH . I 5 HOH A 35 635 43 HOH HOH . I 5 HOH A 36 636 41 HOH HOH . I 5 HOH A 37 637 29 HOH HOH . I 5 HOH A 38 638 51 HOH HOH . I 5 HOH A 39 639 67 HOH HOH . I 5 HOH A 40 640 31 HOH HOH . I 5 HOH A 41 641 39 HOH HOH . J 5 HOH B 1 601 30 HOH HOH . J 5 HOH B 2 602 58 HOH HOH . J 5 HOH B 3 603 7 HOH HOH . J 5 HOH B 4 604 4 HOH HOH . J 5 HOH B 5 605 10 HOH HOH . J 5 HOH B 6 606 74 HOH HOH . J 5 HOH B 7 607 28 HOH HOH . J 5 HOH B 8 608 54 HOH HOH . J 5 HOH B 9 609 52 HOH HOH . J 5 HOH B 10 610 5 HOH HOH . J 5 HOH B 11 611 34 HOH HOH . J 5 HOH B 12 612 50 HOH HOH . J 5 HOH B 13 613 6 HOH HOH . J 5 HOH B 14 614 1 HOH HOH . J 5 HOH B 15 615 26 HOH HOH . J 5 HOH B 16 616 20 HOH HOH . J 5 HOH B 17 617 70 HOH HOH . J 5 HOH B 18 618 76 HOH HOH . J 5 HOH B 19 619 13 HOH HOH . J 5 HOH B 20 620 37 HOH HOH . J 5 HOH B 21 621 12 HOH HOH . J 5 HOH B 22 622 44 HOH HOH . J 5 HOH B 23 623 27 HOH HOH . J 5 HOH B 24 624 75 HOH HOH . J 5 HOH B 25 625 64 HOH HOH . J 5 HOH B 26 626 71 HOH HOH . J 5 HOH B 27 627 53 HOH HOH . J 5 HOH B 28 628 47 HOH HOH . J 5 HOH B 29 629 73 HOH HOH . J 5 HOH B 30 630 55 HOH HOH . J 5 HOH B 31 631 46 HOH HOH . J 5 HOH B 32 632 63 HOH HOH . J 5 HOH B 33 633 61 HOH HOH . J 5 HOH B 34 634 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 32.382 3.233 17.706 1 84.59 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 2 31.923 3.431 16.387 1 96.9 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 2 33.417 2.111 17.625 1 95.66 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 2 34.714 2.61 17.615 1 99.21 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 2 33.173 1.244 18.862 1 91.3 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 2 33.015 -0.08 18.409 1 92.14 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . C 2 32.79 4.027 18.087 1 101.51 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . C 2 31.673 2.979 18.318 1 101.51 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . C 2 31.9 4.277 16.251 1 116.28 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . C 2 33.296 1.605 16.806 1 114.79 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . C 2 35.08 2.396 16.887 1 119.05 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . C 2 33.916 1.356 19.475 1 109.56 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . C 2 32.397 1.584 19.335 1 109.56 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . C 2 33.199 -0.601 19.067 1 110.57 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #