data_8VHC # _model_server_result.job_id Wtu8X1v0vVkIAWLxStO4fw _model_server_result.datetime_utc '2024-11-08 19:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vhc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8VHC # _exptl.entry_id 8VHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VHC _cell.length_a 82.884 _cell.length_b 82.884 _cell.length_c 303.926 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 250 n n PA O2A NDP sing 251 n n PA O5B NDP sing 252 n n PA O3 NDP sing 253 n n O2A HOA2 NDP sing 254 n n O5B C5B NDP sing 255 n n C5B C4B NDP sing 256 n n C5B H51A NDP sing 257 n n C5B H52A NDP sing 258 n n C4B O4B NDP sing 259 n n C4B C3B NDP sing 260 n n C4B H4B NDP sing 261 n n O4B C1B NDP sing 262 n n C3B O3B NDP sing 263 n n C3B C2B NDP sing 264 n n C3B H3B NDP sing 265 n n O3B HO3A NDP sing 266 n n C2B O2B NDP sing 267 n n C2B C1B NDP sing 268 n n C2B H2B NDP sing 269 n n O2B P2B NDP sing 270 n n C1B N9A NDP sing 271 n n C1B H1B NDP sing 272 n n N9A C8A NDP sing 273 n y N9A C4A NDP sing 274 n y C8A N7A NDP doub 275 n y C8A H8A NDP sing 276 n n N7A C5A NDP sing 277 n y C5A C6A NDP sing 278 n y C5A C4A NDP doub 279 n y C6A N6A NDP sing 280 n n C6A N1A NDP doub 281 n y N6A H61A NDP sing 282 n n N6A H62A NDP sing 283 n n N1A C2A NDP sing 284 n y C2A N3A NDP doub 285 n y C2A H2A NDP sing 286 n n N3A C4A NDP sing 287 n y O3 PN NDP sing 288 n n PN O1N NDP doub 289 n n PN O2N NDP sing 290 n n PN O5D NDP sing 291 n n O2N H21N NDP sing 292 n n O5D C5D NDP sing 293 n n C5D C4D NDP sing 294 n n C5D H51N NDP sing 295 n n C5D H52N NDP sing 296 n n C4D O4D NDP sing 297 n n C4D C3D NDP sing 298 n n C4D H4D NDP sing 299 n n O4D C1D NDP sing 300 n n C3D O3D NDP sing 301 n n C3D C2D NDP sing 302 n n C3D H3D NDP sing 303 n n O3D HO3N NDP sing 304 n n C2D O2D NDP sing 305 n n C2D C1D NDP sing 306 n n C2D H2D NDP sing 307 n n O2D HO2N NDP sing 308 n n C1D N1N NDP sing 309 n n C1D H1D NDP sing 310 n n N1N C2N NDP sing 311 n n N1N C6N NDP sing 312 n n C2N C3N NDP doub 313 n n C2N H2N NDP sing 314 n n C3N C7N NDP sing 315 n n C3N C4N NDP sing 316 n n C7N O7N NDP doub 317 n n C7N N7N NDP sing 318 n n N7N H71N NDP sing 319 n n N7N H72N NDP sing 320 n n C4N C5N NDP sing 321 n n C4N H41N NDP sing 322 n n C4N H42N NDP sing 323 n n C5N C6N NDP doub 324 n n C5N H5N NDP sing 325 n n C6N H6N NDP sing 326 n n P2B O1X NDP doub 327 n n P2B O2X NDP sing 328 n n P2B O3X NDP sing 329 n n O2X HOP2 NDP sing 330 n n O3X HOP3 NDP sing 331 n n # _atom_sites.entry_id 8VHC _atom_sites.fract_transf_matrix[1][1] 0.012065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 502 GOL GOL . D 3 NDP A 1 502 503 NDP NDP . E 2 GOL B 1 501 502 GOL GOL . F 3 NDP B 1 502 503 NDP NDP . G 4 SO4 B 1 503 2 SO4 SO4 . H 4 SO4 B 1 504 4 SO4 SO4 . I 5 HOH A 1 601 18 HOH HOH . I 5 HOH A 2 602 68 HOH HOH . I 5 HOH A 3 603 49 HOH HOH . I 5 HOH A 4 604 36 HOH HOH . I 5 HOH A 5 605 65 HOH HOH . I 5 HOH A 6 606 3 HOH HOH . I 5 HOH A 7 607 22 HOH HOH . I 5 HOH A 8 608 9 HOH HOH . I 5 HOH A 9 609 21 HOH HOH . I 5 HOH A 10 610 11 HOH HOH . I 5 HOH A 11 611 60 HOH HOH . I 5 HOH A 12 612 24 HOH HOH . I 5 HOH A 13 613 8 HOH HOH . I 5 HOH A 14 614 35 HOH HOH . I 5 HOH A 15 615 72 HOH HOH . I 5 HOH A 16 616 17 HOH HOH . I 5 HOH A 17 617 57 HOH HOH . I 5 HOH A 18 618 33 HOH HOH . I 5 HOH A 19 619 2 HOH HOH . I 5 HOH A 20 620 38 HOH HOH . I 5 HOH A 21 621 16 HOH HOH . I 5 HOH A 22 622 32 HOH HOH . I 5 HOH A 23 623 42 HOH HOH . I 5 HOH A 24 624 14 HOH HOH . I 5 HOH A 25 625 19 HOH HOH . I 5 HOH A 26 626 40 HOH HOH . I 5 HOH A 27 627 15 HOH HOH . I 5 HOH A 28 628 23 HOH HOH . I 5 HOH A 29 629 48 HOH HOH . I 5 HOH A 30 630 66 HOH HOH . I 5 HOH A 31 631 25 HOH HOH . I 5 HOH A 32 632 59 HOH HOH . I 5 HOH A 33 633 69 HOH HOH . I 5 HOH A 34 634 62 HOH HOH . I 5 HOH A 35 635 43 HOH HOH . I 5 HOH A 36 636 41 HOH HOH . I 5 HOH A 37 637 29 HOH HOH . I 5 HOH A 38 638 51 HOH HOH . I 5 HOH A 39 639 67 HOH HOH . I 5 HOH A 40 640 31 HOH HOH . I 5 HOH A 41 641 39 HOH HOH . J 5 HOH B 1 601 30 HOH HOH . J 5 HOH B 2 602 58 HOH HOH . J 5 HOH B 3 603 7 HOH HOH . J 5 HOH B 4 604 4 HOH HOH . J 5 HOH B 5 605 10 HOH HOH . J 5 HOH B 6 606 74 HOH HOH . J 5 HOH B 7 607 28 HOH HOH . J 5 HOH B 8 608 54 HOH HOH . J 5 HOH B 9 609 52 HOH HOH . J 5 HOH B 10 610 5 HOH HOH . J 5 HOH B 11 611 34 HOH HOH . J 5 HOH B 12 612 50 HOH HOH . J 5 HOH B 13 613 6 HOH HOH . J 5 HOH B 14 614 1 HOH HOH . J 5 HOH B 15 615 26 HOH HOH . J 5 HOH B 16 616 20 HOH HOH . J 5 HOH B 17 617 70 HOH HOH . J 5 HOH B 18 618 76 HOH HOH . J 5 HOH B 19 619 13 HOH HOH . J 5 HOH B 20 620 37 HOH HOH . J 5 HOH B 21 621 12 HOH HOH . J 5 HOH B 22 622 44 HOH HOH . J 5 HOH B 23 623 27 HOH HOH . J 5 HOH B 24 624 75 HOH HOH . J 5 HOH B 25 625 64 HOH HOH . J 5 HOH B 26 626 71 HOH HOH . J 5 HOH B 27 627 53 HOH HOH . J 5 HOH B 28 628 47 HOH HOH . J 5 HOH B 29 629 73 HOH HOH . J 5 HOH B 30 630 55 HOH HOH . J 5 HOH B 31 631 46 HOH HOH . J 5 HOH B 32 632 63 HOH HOH . J 5 HOH B 33 633 61 HOH HOH . J 5 HOH B 34 634 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 3 23.399 3.612 15.789 1 53.44 ? PA NDP 502 A 1 HETATM 2 O O1A NDP . . . D 3 23.599 2.164 15.509 1 53.15 ? O1A NDP 502 A 1 HETATM 3 O O2A NDP . . . D 3 23.493 4.117 17.194 1 56.36 -1 O2A NDP 502 A 1 HETATM 4 O O5B NDP . . . D 3 21.974 4.134 15.158 1 60.07 ? O5B NDP 502 A 1 HETATM 5 C C5B NDP . . . D 3 22.02 3.752 13.83 1 60.87 ? C5B NDP 502 A 1 HETATM 6 C C4B NDP . . . D 3 20.656 3.848 13.196 1 52.55 ? C4B NDP 502 A 1 HETATM 7 O O4B NDP . . . D 3 20.208 2.521 12.855 1 57.65 ? O4B NDP 502 A 1 HETATM 8 C C3B NDP . . . D 3 19.59 4.458 14.122 1 58.88 ? C3B NDP 502 A 1 HETATM 9 O O3B NDP . . . D 3 19.509 5.835 13.922 1 51.33 ? O3B NDP 502 A 1 HETATM 10 C C2B NDP . . . D 3 18.336 3.818 13.515 1 61.12 ? C2B NDP 502 A 1 HETATM 11 O O2B NDP . . . D 3 18.037 4.292 12.3 1 73.91 ? O2B NDP 502 A 1 HETATM 12 C C1B NDP . . . D 3 18.883 2.346 13.369 1 56.25 ? C1B NDP 502 A 1 HETATM 13 N N9A NDP . . . D 3 18.944 1.612 14.65 1 58.37 ? N9A NDP 502 A 1 HETATM 14 C C8A NDP . . . D 3 20.081 1.194 15.364 1 58.31 ? C8A NDP 502 A 1 HETATM 15 N N7A NDP . . . D 3 19.793 0.536 16.504 1 53.08 ? N7A NDP 502 A 1 HETATM 16 C C5A NDP . . . D 3 18.391 0.52 16.534 1 60.86 ? C5A NDP 502 A 1 HETATM 17 C C6A NDP . . . D 3 17.48 -0.012 17.457 1 58.35 ? C6A NDP 502 A 1 HETATM 18 N N6A NDP . . . D 3 17.93 -0.663 18.588 1 52.69 ? N6A NDP 502 A 1 HETATM 19 N N1A NDP . . . D 3 16.133 0.098 17.268 1 60.14 ? N1A NDP 502 A 1 HETATM 20 C C2A NDP . . . D 3 15.756 0.758 16.122 1 60.4 ? C2A NDP 502 A 1 HETATM 21 N N3A NDP . . . D 3 16.492 1.32 15.149 1 59.46 ? N3A NDP 502 A 1 HETATM 22 C C4A NDP . . . D 3 17.843 1.185 15.383 1 58.23 ? C4A NDP 502 A 1 HETATM 23 O O3 NDP . . . D 3 24.681 4.249 14.965 1 54.13 ? O3 NDP 502 A 1 HETATM 24 P PN NDP . . . D 3 24.6 5.839 14.855 1 57.66 ? PN NDP 502 A 1 HETATM 25 O O1N NDP . . . D 3 25.781 6.283 14.091 1 73.11 ? O1N NDP 502 A 1 HETATM 26 O O2N NDP . . . D 3 23.216 6.413 14.629 1 73.86 -1 O2N NDP 502 A 1 HETATM 27 O O5D NDP . . . D 3 24.95 6.534 16.431 1 66.86 ? O5D NDP 502 A 1 HETATM 28 C C5D NDP . . . D 3 26.082 5.897 16.836 1 60.33 ? C5D NDP 502 A 1 HETATM 29 C C4D NDP . . . D 3 26.437 6.422 18.197 1 58.45 ? C4D NDP 502 A 1 HETATM 30 O O4D NDP . . . D 3 26.666 5.276 19.024 1 52.38 ? O4D NDP 502 A 1 HETATM 31 C C3D NDP . . . D 3 27.792 7.178 18.118 1 65.57 ? C3D NDP 502 A 1 HETATM 32 O O3D NDP . . . D 3 27.959 7.928 19.272 1 49.89 ? O3D NDP 502 A 1 HETATM 33 C C2D NDP . . . D 3 28.748 5.981 18.067 1 49.5 ? C2D NDP 502 A 1 HETATM 34 O O2D NDP . . . D 3 30.008 6.282 18.569 1 55.96 ? O2D NDP 502 A 1 HETATM 35 C C1D NDP . . . D 3 28.053 5.029 19.074 1 59.54 ? C1D NDP 502 A 1 HETATM 36 N N1N NDP . . . D 3 28.299 3.618 18.697 1 57.97 ? N1N NDP 502 A 1 HETATM 37 C C2N NDP . . . D 3 28.87 2.775 19.618 1 58.75 ? C2N NDP 502 A 1 HETATM 38 C C3N NDP . . . D 3 28.705 1.432 19.497 1 63.35 ? C3N NDP 502 A 1 HETATM 39 C C7N NDP . . . D 3 29.059 0.678 20.69 1 62.78 ? C7N NDP 502 A 1 HETATM 40 O O7N NDP . . . D 3 29.372 1.187 21.773 1 54.24 ? O7N NDP 502 A 1 HETATM 41 N N7N NDP . . . D 3 29.05 -0.703 20.588 1 62.87 ? N7N NDP 502 A 1 HETATM 42 C C4N NDP . . . D 3 28.565 0.804 18.151 1 65.03 ? C4N NDP 502 A 1 HETATM 43 C C5N NDP . . . D 3 28.244 1.824 17.112 1 55.41 ? C5N NDP 502 A 1 HETATM 44 C C6N NDP . . . D 3 27.97 3.1 17.427 1 59.22 ? C6N NDP 502 A 1 HETATM 45 P P2B NDP . . . D 3 16.542 4.928 12.137 1 64.85 ? P2B NDP 502 A 1 HETATM 46 O O1X NDP . . . D 3 16.599 5.104 10.651 1 68.46 ? O1X NDP 502 A 1 HETATM 47 O O2X NDP . . . D 3 15.608 3.84 12.684 1 80.02 -1 O2X NDP 502 A 1 HETATM 48 O O3X NDP . . . D 3 16.747 6.152 12.983 1 74.97 -1 O3X NDP 502 A 1 HETATM 49 H H51A NDP . . . D 3 22.708 4.407 13.295 1 73.04 ? H51A NDP 502 A 1 HETATM 50 H H52A NDP . . . D 3 22.37 2.722 13.768 1 73.04 ? H52A NDP 502 A 1 HETATM 51 H H4B NDP . . . D 3 20.753 4.508 12.333 1 63.06 ? H4B NDP 502 A 1 HETATM 52 H H3B NDP . . . D 3 19.75 4.179 15.162 1 70.66 ? H3B NDP 502 A 1 HETATM 53 H HO3A NDP . . . D 3 19.014 6.009 13.132 1 61.59 ? HO3A NDP 502 A 1 HETATM 54 H H2B NDP . . . D 3 17.494 3.877 14.203 1 73.35 ? H2B NDP 502 A 1 HETATM 55 H H1B NDP . . . D 3 18.281 1.764 12.671 1 67.5 ? H1B NDP 502 A 1 HETATM 56 H H8A NDP . . . D 3 21.094 1.383 15.029 1 69.97 ? H8A NDP 502 A 1 HETATM 57 H H61A NDP . . . D 3 17.284 -1.167 19.169 1 63.23 ? H61A NDP 502 A 1 HETATM 58 H H62A NDP . . . D 3 18.904 -0.625 18.835 1 63.23 ? H62A NDP 502 A 1 HETATM 59 H H2A NDP . . . D 3 14.681 0.84 15.98 1 72.48 ? H2A NDP 502 A 1 HETATM 60 H H51N NDP . . . D 3 25.903 4.823 16.889 1 72.4 ? H51N NDP 502 A 1 HETATM 61 H H52N NDP . . . D 3 26.892 6.102 16.137 1 72.4 ? H52N NDP 502 A 1 HETATM 62 H H4D NDP . . . D 3 25.67 7.09 18.589 1 70.14 ? H4D NDP 502 A 1 HETATM 63 H H3D NDP . . . D 3 27.868 7.828 17.246 1 78.68 ? H3D NDP 502 A 1 HETATM 64 H HO3N NDP . . . D 3 27.517 7.501 19.991 1 59.87 ? HO3N NDP 502 A 1 HETATM 65 H H2D NDP . . . D 3 28.8 5.546 17.07 1 59.4 ? H2D NDP 502 A 1 HETATM 66 H HO2N NDP . . . D 3 30.425 5.494 18.889 1 67.15 ? HO2N NDP 502 A 1 HETATM 67 H H1D NDP . . . D 3 28.412 5.265 20.076 1 71.45 ? H1D NDP 502 A 1 HETATM 68 H H2N NDP . . . D 3 29.757 3.131 20.138 1 70.5 ? H2N NDP 502 A 1 HETATM 69 H H71N NDP . . . D 3 29.29 -1.261 21.388 1 75.44 ? H71N NDP 502 A 1 HETATM 70 H H72N NDP . . . D 3 28.802 -1.147 19.722 1 75.44 ? H72N NDP 502 A 1 HETATM 71 H H41N NDP . . . D 3 27.763 0.066 18.188 1 78.04 ? H41N NDP 502 A 1 HETATM 72 H H42N NDP . . . D 3 29.503 0.312 17.892 1 78.04 ? H42N NDP 502 A 1 HETATM 73 H H5N NDP . . . D 3 28.231 1.526 16.066 1 66.49 ? H5N NDP 502 A 1 HETATM 74 H H6N NDP . . . D 3 27.49 3.737 16.689 1 71.06 ? H6N NDP 502 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 74 #