data_8VHH # _model_server_result.job_id UzRj78jirSBwdckHUzV_1Q _model_server_result.datetime_utc '2024-11-06 23:43:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8VHH # _exptl.entry_id 8VHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VHH _cell.length_a 165.698 _cell.length_b 165.698 _cell.length_c 83.061 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 228 A SER 228 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.284 ? metalc ? metalc2 A O ALA 263 A ALA 263 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc3 A OG SER 265 A SER 265 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc4 A O TYR 301 A TYR 301 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc5 A O GLY 303 A GLY 303 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc6 D K K . A K 402 1_555 J O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc7 B O ALA 263 B ALA 263 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc8 B OG SER 265 B SER 265 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc9 B O TYR 301 B TYR 301 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc10 B O GLY 303 B GLY 303 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc11 H K K . B K 402 1_555 K O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VHH _atom_sites.fract_transf_matrix[1][1] 0.006035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 401 401 PLP PLP . D 3 K A 1 402 1 K K . E 4 PO4 A 1 403 1 PO4 PO4 . F 4 PO4 A 1 404 3 PO4 PO4 . G 2 PLP B 1 401 401 PLP PLP . H 3 K B 1 402 2 K K . I 4 PO4 B 1 403 2 PO4 PO4 . J 5 HOH A 1 501 1 HOH HOH . J 5 HOH A 2 502 48 HOH HOH . J 5 HOH A 3 503 16 HOH HOH . J 5 HOH A 4 504 40 HOH HOH . J 5 HOH A 5 505 57 HOH HOH . J 5 HOH A 6 506 73 HOH HOH . J 5 HOH A 7 507 41 HOH HOH . J 5 HOH A 8 508 8 HOH HOH . J 5 HOH A 9 509 77 HOH HOH . J 5 HOH A 10 510 23 HOH HOH . J 5 HOH A 11 511 19 HOH HOH . J 5 HOH A 12 512 32 HOH HOH . J 5 HOH A 13 513 45 HOH HOH . J 5 HOH A 14 514 11 HOH HOH . J 5 HOH A 15 515 62 HOH HOH . J 5 HOH A 16 516 91 HOH HOH . J 5 HOH A 17 517 81 HOH HOH . J 5 HOH A 18 518 22 HOH HOH . J 5 HOH A 19 519 12 HOH HOH . J 5 HOH A 20 520 54 HOH HOH . J 5 HOH A 21 521 34 HOH HOH . J 5 HOH A 22 522 68 HOH HOH . J 5 HOH A 23 523 26 HOH HOH . J 5 HOH A 24 524 88 HOH HOH . J 5 HOH A 25 525 89 HOH HOH . J 5 HOH A 26 526 37 HOH HOH . J 5 HOH A 27 527 79 HOH HOH . J 5 HOH A 28 528 86 HOH HOH . J 5 HOH A 29 529 39 HOH HOH . J 5 HOH A 30 530 35 HOH HOH . J 5 HOH A 31 531 53 HOH HOH . J 5 HOH A 32 532 13 HOH HOH . J 5 HOH A 33 533 61 HOH HOH . J 5 HOH A 34 534 85 HOH HOH . J 5 HOH A 35 535 47 HOH HOH . J 5 HOH A 36 536 43 HOH HOH . J 5 HOH A 37 537 67 HOH HOH . J 5 HOH A 38 538 29 HOH HOH . J 5 HOH A 39 539 4 HOH HOH . J 5 HOH A 40 540 25 HOH HOH . J 5 HOH A 41 541 80 HOH HOH . J 5 HOH A 42 542 82 HOH HOH . J 5 HOH A 43 543 14 HOH HOH . J 5 HOH A 44 544 38 HOH HOH . J 5 HOH A 45 545 60 HOH HOH . J 5 HOH A 46 546 15 HOH HOH . J 5 HOH A 47 547 51 HOH HOH . J 5 HOH A 48 548 56 HOH HOH . J 5 HOH A 49 549 7 HOH HOH . J 5 HOH A 50 550 28 HOH HOH . J 5 HOH A 51 551 75 HOH HOH . J 5 HOH A 52 552 74 HOH HOH . J 5 HOH A 53 553 55 HOH HOH . J 5 HOH A 54 554 6 HOH HOH . J 5 HOH A 55 555 17 HOH HOH . J 5 HOH A 56 556 65 HOH HOH . J 5 HOH A 57 557 87 HOH HOH . J 5 HOH A 58 558 9 HOH HOH . J 5 HOH A 59 559 63 HOH HOH . J 5 HOH A 60 560 46 HOH HOH . J 5 HOH A 61 561 94 HOH HOH . J 5 HOH A 62 562 58 HOH HOH . J 5 HOH A 63 563 70 HOH HOH . J 5 HOH A 64 564 93 HOH HOH . J 5 HOH A 65 565 64 HOH HOH . K 5 HOH B 1 501 42 HOH HOH . K 5 HOH B 2 502 92 HOH HOH . K 5 HOH B 3 503 2 HOH HOH . K 5 HOH B 4 504 27 HOH HOH . K 5 HOH B 5 505 84 HOH HOH . K 5 HOH B 6 506 24 HOH HOH . K 5 HOH B 7 507 36 HOH HOH . K 5 HOH B 8 508 10 HOH HOH . K 5 HOH B 9 509 59 HOH HOH . K 5 HOH B 10 510 3 HOH HOH . K 5 HOH B 11 511 72 HOH HOH . K 5 HOH B 12 512 66 HOH HOH . K 5 HOH B 13 513 33 HOH HOH . K 5 HOH B 14 514 78 HOH HOH . K 5 HOH B 15 515 21 HOH HOH . K 5 HOH B 16 516 18 HOH HOH . K 5 HOH B 17 517 30 HOH HOH . K 5 HOH B 18 518 31 HOH HOH . K 5 HOH B 19 519 76 HOH HOH . K 5 HOH B 20 520 49 HOH HOH . K 5 HOH B 21 521 20 HOH HOH . K 5 HOH B 22 522 50 HOH HOH . K 5 HOH B 23 523 5 HOH HOH . K 5 HOH B 24 524 44 HOH HOH . K 5 HOH B 25 525 83 HOH HOH . K 5 HOH B 26 526 71 HOH HOH . K 5 HOH B 27 527 52 HOH HOH . K 5 HOH B 28 528 69 HOH HOH . K 5 HOH B 29 529 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 34.751 _atom_site.Cartn_y 38.529 _atom_site.Cartn_z 1.762 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #