data_8VHL # _model_server_result.job_id i80ft_vZ_Tzw4euEtTox_Q _model_server_result.datetime_utc '2024-10-25 20:21:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8VHL # _exptl.entry_id 8VHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VHL _cell.length_a 90.744 _cell.length_b 90.744 _cell.length_c 122.713 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 353 n y N1 C6 ORO sing 354 n y N1 HN1 ORO sing 355 n n C2 O2 ORO doub 356 n n C2 N3 ORO sing 357 n y N3 C4 ORO sing 358 n y N3 HN3 ORO sing 359 n n C4 O4 ORO doub 360 n n C4 C5 ORO sing 361 n y C5 C6 ORO doub 362 n y C5 H5 ORO sing 363 n n C6 C7 ORO sing 364 n n C7 O71 ORO doub 365 n n C7 O72 ORO sing 366 n n O72 HO7 ORO sing 367 n n # _atom_sites.entry_id 8VHL _atom_sites.fract_transf_matrix[1][1] 0.01102 _atom_sites.fract_transf_matrix[1][2] 0.006362 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 500 FMN FMN . C 3 ORO A 1 402 501 ORO ORO . D 4 A1AA2 A 1 403 1 A1AA2 INX . E 5 ACT A 1 404 1 ACT ACT . F 5 ACT A 1 405 2 ACT ACT . G 6 SO4 A 1 406 3 SO4 SO4 . H 5 ACT A 1 407 5 ACT ACT . I 7 GOL A 1 408 6 GOL GOL . J 7 GOL A 1 409 7 GOL GOL . K 6 SO4 A 1 410 8 SO4 SO4 . L 6 SO4 A 1 411 9 SO4 SO4 . M 7 GOL A 1 412 10 GOL GOL . N 7 GOL A 1 413 11 GOL GOL . O 8 HOH A 1 501 108 HOH HOH . O 8 HOH A 2 502 343 HOH HOH . O 8 HOH A 3 503 109 HOH HOH . O 8 HOH A 4 504 169 HOH HOH . O 8 HOH A 5 505 71 HOH HOH . O 8 HOH A 6 506 113 HOH HOH . O 8 HOH A 7 507 204 HOH HOH . O 8 HOH A 8 508 17 HOH HOH . O 8 HOH A 9 509 185 HOH HOH . O 8 HOH A 10 510 142 HOH HOH . O 8 HOH A 11 511 66 HOH HOH . O 8 HOH A 12 512 213 HOH HOH . O 8 HOH A 13 513 18 HOH HOH . O 8 HOH A 14 514 72 HOH HOH . O 8 HOH A 15 515 165 HOH HOH . O 8 HOH A 16 516 89 HOH HOH . O 8 HOH A 17 517 1 HOH HOH . O 8 HOH A 18 518 320 HOH HOH . O 8 HOH A 19 519 133 HOH HOH . O 8 HOH A 20 520 36 HOH HOH . O 8 HOH A 21 521 361 HOH HOH . O 8 HOH A 22 522 31 HOH HOH . O 8 HOH A 23 523 4 HOH HOH . O 8 HOH A 24 524 332 HOH HOH . O 8 HOH A 25 525 21 HOH HOH . O 8 HOH A 26 526 88 HOH HOH . O 8 HOH A 27 527 12 HOH HOH . O 8 HOH A 28 528 25 HOH HOH . O 8 HOH A 29 529 55 HOH HOH . O 8 HOH A 30 530 54 HOH HOH . O 8 HOH A 31 531 324 HOH HOH . O 8 HOH A 32 532 32 HOH HOH . O 8 HOH A 33 533 14 HOH HOH . O 8 HOH A 34 534 77 HOH HOH . O 8 HOH A 35 535 152 HOH HOH . O 8 HOH A 36 536 131 HOH HOH . O 8 HOH A 37 537 6 HOH HOH . O 8 HOH A 38 538 85 HOH HOH . O 8 HOH A 39 539 78 HOH HOH . O 8 HOH A 40 540 161 HOH HOH . O 8 HOH A 41 541 116 HOH HOH . O 8 HOH A 42 542 74 HOH HOH . O 8 HOH A 43 543 147 HOH HOH . O 8 HOH A 44 544 28 HOH HOH . O 8 HOH A 45 545 216 HOH HOH . O 8 HOH A 46 546 42 HOH HOH . O 8 HOH A 47 547 30 HOH HOH . O 8 HOH A 48 548 156 HOH HOH . O 8 HOH A 49 549 294 HOH HOH . O 8 HOH A 50 550 135 HOH HOH . O 8 HOH A 51 551 37 HOH HOH . O 8 HOH A 52 552 70 HOH HOH . O 8 HOH A 53 553 22 HOH HOH . O 8 HOH A 54 554 27 HOH HOH . O 8 HOH A 55 555 181 HOH HOH . O 8 HOH A 56 556 53 HOH HOH . O 8 HOH A 57 557 81 HOH HOH . O 8 HOH A 58 558 162 HOH HOH . O 8 HOH A 59 559 124 HOH HOH . O 8 HOH A 60 560 159 HOH HOH . O 8 HOH A 61 561 64 HOH HOH . O 8 HOH A 62 562 103 HOH HOH . O 8 HOH A 63 563 8 HOH HOH . O 8 HOH A 64 564 3 HOH HOH . O 8 HOH A 65 565 24 HOH HOH . O 8 HOH A 66 566 334 HOH HOH . O 8 HOH A 67 567 150 HOH HOH . O 8 HOH A 68 568 328 HOH HOH . O 8 HOH A 69 569 143 HOH HOH . O 8 HOH A 70 570 13 HOH HOH . O 8 HOH A 71 571 310 HOH HOH . O 8 HOH A 72 572 90 HOH HOH . O 8 HOH A 73 573 138 HOH HOH . O 8 HOH A 74 574 97 HOH HOH . O 8 HOH A 75 575 45 HOH HOH . O 8 HOH A 76 576 196 HOH HOH . O 8 HOH A 77 577 189 HOH HOH . O 8 HOH A 78 578 125 HOH HOH . O 8 HOH A 79 579 269 HOH HOH . O 8 HOH A 80 580 63 HOH HOH . O 8 HOH A 81 581 348 HOH HOH . O 8 HOH A 82 582 360 HOH HOH . O 8 HOH A 83 583 65 HOH HOH . O 8 HOH A 84 584 68 HOH HOH . O 8 HOH A 85 585 61 HOH HOH . O 8 HOH A 86 586 134 HOH HOH . O 8 HOH A 87 587 50 HOH HOH . O 8 HOH A 88 588 114 HOH HOH . O 8 HOH A 89 589 57 HOH HOH . O 8 HOH A 90 590 29 HOH HOH . O 8 HOH A 91 591 179 HOH HOH . O 8 HOH A 92 592 10 HOH HOH . O 8 HOH A 93 593 100 HOH HOH . O 8 HOH A 94 594 102 HOH HOH . O 8 HOH A 95 595 153 HOH HOH . O 8 HOH A 96 596 136 HOH HOH . O 8 HOH A 97 597 130 HOH HOH . O 8 HOH A 98 598 137 HOH HOH . O 8 HOH A 99 599 39 HOH HOH . O 8 HOH A 100 600 242 HOH HOH . O 8 HOH A 101 601 2 HOH HOH . O 8 HOH A 102 602 302 HOH HOH . O 8 HOH A 103 603 315 HOH HOH . O 8 HOH A 104 604 99 HOH HOH . O 8 HOH A 105 605 207 HOH HOH . O 8 HOH A 106 606 300 HOH HOH . O 8 HOH A 107 607 141 HOH HOH . O 8 HOH A 108 608 93 HOH HOH . O 8 HOH A 109 609 87 HOH HOH . O 8 HOH A 110 610 122 HOH HOH . O 8 HOH A 111 611 7 HOH HOH . O 8 HOH A 112 612 338 HOH HOH . O 8 HOH A 113 613 98 HOH HOH . O 8 HOH A 114 614 166 HOH HOH . O 8 HOH A 115 615 47 HOH HOH . O 8 HOH A 116 616 187 HOH HOH . O 8 HOH A 117 617 218 HOH HOH . O 8 HOH A 118 618 178 HOH HOH . O 8 HOH A 119 619 95 HOH HOH . O 8 HOH A 120 620 190 HOH HOH . O 8 HOH A 121 621 350 HOH HOH . O 8 HOH A 122 622 168 HOH HOH . O 8 HOH A 123 623 26 HOH HOH . O 8 HOH A 124 624 82 HOH HOH . O 8 HOH A 125 625 340 HOH HOH . O 8 HOH A 126 626 69 HOH HOH . O 8 HOH A 127 627 73 HOH HOH . O 8 HOH A 128 628 145 HOH HOH . O 8 HOH A 129 629 76 HOH HOH . O 8 HOH A 130 630 215 HOH HOH . O 8 HOH A 131 631 43 HOH HOH . O 8 HOH A 132 632 11 HOH HOH . O 8 HOH A 133 633 48 HOH HOH . O 8 HOH A 134 634 205 HOH HOH . O 8 HOH A 135 635 252 HOH HOH . O 8 HOH A 136 636 199 HOH HOH . O 8 HOH A 137 637 304 HOH HOH . O 8 HOH A 138 638 126 HOH HOH . O 8 HOH A 139 639 347 HOH HOH . O 8 HOH A 140 640 67 HOH HOH . O 8 HOH A 141 641 58 HOH HOH . O 8 HOH A 142 642 51 HOH HOH . O 8 HOH A 143 643 163 HOH HOH . O 8 HOH A 144 644 330 HOH HOH . O 8 HOH A 145 645 107 HOH HOH . O 8 HOH A 146 646 359 HOH HOH . O 8 HOH A 147 647 129 HOH HOH . O 8 HOH A 148 648 33 HOH HOH . O 8 HOH A 149 649 19 HOH HOH . O 8 HOH A 150 650 41 HOH HOH . O 8 HOH A 151 651 336 HOH HOH . O 8 HOH A 152 652 117 HOH HOH . O 8 HOH A 153 653 341 HOH HOH . O 8 HOH A 154 654 180 HOH HOH . O 8 HOH A 155 655 38 HOH HOH . O 8 HOH A 156 656 182 HOH HOH . O 8 HOH A 157 657 289 HOH HOH . O 8 HOH A 158 658 44 HOH HOH . O 8 HOH A 159 659 344 HOH HOH . O 8 HOH A 160 660 111 HOH HOH . O 8 HOH A 161 661 228 HOH HOH . O 8 HOH A 162 662 236 HOH HOH . O 8 HOH A 163 663 184 HOH HOH . O 8 HOH A 164 664 16 HOH HOH . O 8 HOH A 165 665 35 HOH HOH . O 8 HOH A 166 666 92 HOH HOH . O 8 HOH A 167 667 34 HOH HOH . O 8 HOH A 168 668 337 HOH HOH . O 8 HOH A 169 669 23 HOH HOH . O 8 HOH A 170 670 149 HOH HOH . O 8 HOH A 171 671 194 HOH HOH . O 8 HOH A 172 672 155 HOH HOH . O 8 HOH A 173 673 60 HOH HOH . O 8 HOH A 174 674 132 HOH HOH . O 8 HOH A 175 675 106 HOH HOH . O 8 HOH A 176 676 20 HOH HOH . O 8 HOH A 177 677 59 HOH HOH . O 8 HOH A 178 678 243 HOH HOH . O 8 HOH A 179 679 286 HOH HOH . O 8 HOH A 180 680 211 HOH HOH . O 8 HOH A 181 681 5 HOH HOH . O 8 HOH A 182 682 157 HOH HOH . O 8 HOH A 183 683 160 HOH HOH . O 8 HOH A 184 684 171 HOH HOH . O 8 HOH A 185 685 183 HOH HOH . O 8 HOH A 186 686 83 HOH HOH . O 8 HOH A 187 687 287 HOH HOH . O 8 HOH A 188 688 203 HOH HOH . O 8 HOH A 189 689 345 HOH HOH . O 8 HOH A 190 690 292 HOH HOH . O 8 HOH A 191 691 239 HOH HOH . O 8 HOH A 192 692 335 HOH HOH . O 8 HOH A 193 693 308 HOH HOH . O 8 HOH A 194 694 222 HOH HOH . O 8 HOH A 195 695 62 HOH HOH . O 8 HOH A 196 696 52 HOH HOH . O 8 HOH A 197 697 139 HOH HOH . O 8 HOH A 198 698 197 HOH HOH . O 8 HOH A 199 699 250 HOH HOH . O 8 HOH A 200 700 352 HOH HOH . O 8 HOH A 201 701 172 HOH HOH . O 8 HOH A 202 702 177 HOH HOH . O 8 HOH A 203 703 326 HOH HOH . O 8 HOH A 204 704 244 HOH HOH . O 8 HOH A 205 705 240 HOH HOH . O 8 HOH A 206 706 313 HOH HOH . O 8 HOH A 207 707 357 HOH HOH . O 8 HOH A 208 708 49 HOH HOH . O 8 HOH A 209 709 210 HOH HOH . O 8 HOH A 210 710 144 HOH HOH . O 8 HOH A 211 711 312 HOH HOH . O 8 HOH A 212 712 284 HOH HOH . O 8 HOH A 213 713 79 HOH HOH . O 8 HOH A 214 714 305 HOH HOH . O 8 HOH A 215 715 112 HOH HOH . O 8 HOH A 216 716 311 HOH HOH . O 8 HOH A 217 717 329 HOH HOH . O 8 HOH A 218 718 229 HOH HOH . O 8 HOH A 219 719 356 HOH HOH . O 8 HOH A 220 720 170 HOH HOH . O 8 HOH A 221 721 295 HOH HOH . O 8 HOH A 222 722 226 HOH HOH . O 8 HOH A 223 723 119 HOH HOH . O 8 HOH A 224 724 346 HOH HOH . O 8 HOH A 225 725 118 HOH HOH . O 8 HOH A 226 726 362 HOH HOH . O 8 HOH A 227 727 154 HOH HOH . O 8 HOH A 228 728 342 HOH HOH . O 8 HOH A 229 729 46 HOH HOH . O 8 HOH A 230 730 275 HOH HOH . O 8 HOH A 231 731 266 HOH HOH . O 8 HOH A 232 732 227 HOH HOH . O 8 HOH A 233 733 317 HOH HOH . O 8 HOH A 234 734 208 HOH HOH . O 8 HOH A 235 735 366 HOH HOH . O 8 HOH A 236 736 224 HOH HOH . O 8 HOH A 237 737 80 HOH HOH . O 8 HOH A 238 738 104 HOH HOH . O 8 HOH A 239 739 86 HOH HOH . O 8 HOH A 240 740 209 HOH HOH . O 8 HOH A 241 741 331 HOH HOH . O 8 HOH A 242 742 214 HOH HOH . O 8 HOH A 243 743 319 HOH HOH . O 8 HOH A 244 744 354 HOH HOH . O 8 HOH A 245 745 15 HOH HOH . O 8 HOH A 246 746 91 HOH HOH . O 8 HOH A 247 747 363 HOH HOH . O 8 HOH A 248 748 297 HOH HOH . O 8 HOH A 249 749 316 HOH HOH . O 8 HOH A 250 750 321 HOH HOH . O 8 HOH A 251 751 298 HOH HOH . O 8 HOH A 252 752 274 HOH HOH . O 8 HOH A 253 753 270 HOH HOH . O 8 HOH A 254 754 248 HOH HOH . O 8 HOH A 255 755 339 HOH HOH . O 8 HOH A 256 756 223 HOH HOH . O 8 HOH A 257 757 301 HOH HOH . O 8 HOH A 258 758 273 HOH HOH . O 8 HOH A 259 759 148 HOH HOH . O 8 HOH A 260 760 303 HOH HOH . O 8 HOH A 261 761 349 HOH HOH . O 8 HOH A 262 762 259 HOH HOH . O 8 HOH A 263 763 358 HOH HOH . O 8 HOH A 264 764 84 HOH HOH . O 8 HOH A 265 765 280 HOH HOH . O 8 HOH A 266 766 288 HOH HOH . O 8 HOH A 267 767 365 HOH HOH . O 8 HOH A 268 768 167 HOH HOH . O 8 HOH A 269 769 323 HOH HOH . O 8 HOH A 270 770 364 HOH HOH . O 8 HOH A 271 771 353 HOH HOH . O 8 HOH A 272 772 233 HOH HOH . O 8 HOH A 273 773 322 HOH HOH . O 8 HOH A 274 774 94 HOH HOH . O 8 HOH A 275 775 192 HOH HOH . O 8 HOH A 276 776 307 HOH HOH . O 8 HOH A 277 777 309 HOH HOH . O 8 HOH A 278 778 318 HOH HOH . O 8 HOH A 279 779 285 HOH HOH . O 8 HOH A 280 780 367 HOH HOH . O 8 HOH A 281 781 120 HOH HOH . O 8 HOH A 282 782 264 HOH HOH . O 8 HOH A 283 783 368 HOH HOH . O 8 HOH A 284 784 351 HOH HOH . O 8 HOH A 285 785 293 HOH HOH . O 8 HOH A 286 786 276 HOH HOH . O 8 HOH A 287 787 299 HOH HOH . O 8 HOH A 288 788 314 HOH HOH . O 8 HOH A 289 789 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 41.678 -19.717 15.629 1 23.81 ? N1 ORO 402 A 1 HETATM 2 C C2 ORO . . . C 3 41.449 -18.467 15.234 1 25.43 ? C2 ORO 402 A 1 HETATM 3 O O2 ORO . . . C 3 41.186 -17.609 16.092 1 26.06 ? O2 ORO 402 A 1 HETATM 4 N N3 ORO . . . C 3 41.462 -18.13 13.907 1 24.1 ? N3 ORO 402 A 1 HETATM 5 C C4 ORO . . . C 3 41.756 -19.04 12.955 1 26.98 ? C4 ORO 402 A 1 HETATM 6 O O4 ORO . . . C 3 41.763 -18.705 11.745 1 26.71 ? O4 ORO 402 A 1 HETATM 7 C C5 ORO . . . C 3 42.009 -20.368 13.371 1 25.32 ? C5 ORO 402 A 1 HETATM 8 C C6 ORO . . . C 3 41.927 -20.679 14.722 1 26.58 ? C6 ORO 402 A 1 HETATM 9 C C7 ORO . . . C 3 42.292 -22.034 15.213 1 30.47 ? C7 ORO 402 A 1 HETATM 10 O O71 ORO . . . C 3 41.894 -23.089 14.68 1 29.77 ? O71 ORO 402 A 1 HETATM 11 O O72 ORO . . . C 3 43.12 -22.054 16.165 1 29.33 ? O72 ORO 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #