data_8VIP # _model_server_result.job_id OKMmMlAOt-Qnr_yE50B1-w _model_server_result.datetime_utc '2024-11-16 20:53:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8VIP # _exptl.entry_id 8VIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VIP _cell.length_a 42.812 _cell.length_b 57.025 _cell.length_c 81.696 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 32 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A OD1 ASP 58 A ASP 38 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 A OD2 ASP 58 A ASP 38 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 A OD1 ASP 60 A ASP 40 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc5 A OD2 ASP 60 A ASP 40 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 B O2B ANP . A ANP 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc7 B O1A ANP . A ANP 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc8 B O2B ANP . A ANP 301 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 C MN MN . A MN 302 1_555 E O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 D MN MN . A MN 303 1_555 E O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? metalc ? metalc11 D MN MN . A MN 303 1_555 E O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc12 D MN MN . A MN 303 1_555 E O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VIP _atom_sites.fract_transf_matrix[1][1] 0.023358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 301 1 ANP ANP . C 3 MN A 1 302 1 MN MN . D 3 MN A 1 303 2 MN MN . E 4 HOH A 1 401 137 HOH HOH . E 4 HOH A 2 402 97 HOH HOH . E 4 HOH A 3 403 116 HOH HOH . E 4 HOH A 4 404 123 HOH HOH . E 4 HOH A 5 405 59 HOH HOH . E 4 HOH A 6 406 1 HOH HOH . E 4 HOH A 7 407 15 HOH HOH . E 4 HOH A 8 408 89 HOH HOH . E 4 HOH A 9 409 127 HOH HOH . E 4 HOH A 10 410 85 HOH HOH . E 4 HOH A 11 411 33 HOH HOH . E 4 HOH A 12 412 139 HOH HOH . E 4 HOH A 13 413 96 HOH HOH . E 4 HOH A 14 414 140 HOH HOH . E 4 HOH A 15 415 11 HOH HOH . E 4 HOH A 16 416 7 HOH HOH . E 4 HOH A 17 417 52 HOH HOH . E 4 HOH A 18 418 9 HOH HOH . E 4 HOH A 19 419 110 HOH HOH . E 4 HOH A 20 420 31 HOH HOH . E 4 HOH A 21 421 143 HOH HOH . E 4 HOH A 22 422 133 HOH HOH . E 4 HOH A 23 423 35 HOH HOH . E 4 HOH A 24 424 36 HOH HOH . E 4 HOH A 25 425 102 HOH HOH . E 4 HOH A 26 426 79 HOH HOH . E 4 HOH A 27 427 129 HOH HOH . E 4 HOH A 28 428 3 HOH HOH . E 4 HOH A 29 429 30 HOH HOH . E 4 HOH A 30 430 73 HOH HOH . E 4 HOH A 31 431 64 HOH HOH . E 4 HOH A 32 432 98 HOH HOH . E 4 HOH A 33 433 41 HOH HOH . E 4 HOH A 34 434 74 HOH HOH . E 4 HOH A 35 435 114 HOH HOH . E 4 HOH A 36 436 39 HOH HOH . E 4 HOH A 37 437 119 HOH HOH . E 4 HOH A 38 438 144 HOH HOH . E 4 HOH A 39 439 58 HOH HOH . E 4 HOH A 40 440 83 HOH HOH . E 4 HOH A 41 441 38 HOH HOH . E 4 HOH A 42 442 40 HOH HOH . E 4 HOH A 43 443 10 HOH HOH . E 4 HOH A 44 444 34 HOH HOH . E 4 HOH A 45 445 5 HOH HOH . E 4 HOH A 46 446 124 HOH HOH . E 4 HOH A 47 447 92 HOH HOH . E 4 HOH A 48 448 121 HOH HOH . E 4 HOH A 49 449 134 HOH HOH . E 4 HOH A 50 450 69 HOH HOH . E 4 HOH A 51 451 105 HOH HOH . E 4 HOH A 52 452 12 HOH HOH . E 4 HOH A 53 453 16 HOH HOH . E 4 HOH A 54 454 43 HOH HOH . E 4 HOH A 55 455 50 HOH HOH . E 4 HOH A 56 456 6 HOH HOH . E 4 HOH A 57 457 13 HOH HOH . E 4 HOH A 58 458 115 HOH HOH . E 4 HOH A 59 459 26 HOH HOH . E 4 HOH A 60 460 44 HOH HOH . E 4 HOH A 61 461 22 HOH HOH . E 4 HOH A 62 462 90 HOH HOH . E 4 HOH A 63 463 101 HOH HOH . E 4 HOH A 64 464 70 HOH HOH . E 4 HOH A 65 465 68 HOH HOH . E 4 HOH A 66 466 8 HOH HOH . E 4 HOH A 67 467 95 HOH HOH . E 4 HOH A 68 468 60 HOH HOH . E 4 HOH A 69 469 48 HOH HOH . E 4 HOH A 70 470 37 HOH HOH . E 4 HOH A 71 471 77 HOH HOH . E 4 HOH A 72 472 62 HOH HOH . E 4 HOH A 73 473 51 HOH HOH . E 4 HOH A 74 474 100 HOH HOH . E 4 HOH A 75 475 84 HOH HOH . E 4 HOH A 76 476 17 HOH HOH . E 4 HOH A 77 477 42 HOH HOH . E 4 HOH A 78 478 19 HOH HOH . E 4 HOH A 79 479 25 HOH HOH . E 4 HOH A 80 480 49 HOH HOH . E 4 HOH A 81 481 75 HOH HOH . E 4 HOH A 82 482 24 HOH HOH . E 4 HOH A 83 483 113 HOH HOH . E 4 HOH A 84 484 46 HOH HOH . E 4 HOH A 85 485 27 HOH HOH . E 4 HOH A 86 486 20 HOH HOH . E 4 HOH A 87 487 28 HOH HOH . E 4 HOH A 88 488 118 HOH HOH . E 4 HOH A 89 489 2 HOH HOH . E 4 HOH A 90 490 67 HOH HOH . E 4 HOH A 91 491 63 HOH HOH . E 4 HOH A 92 492 91 HOH HOH . E 4 HOH A 93 493 61 HOH HOH . E 4 HOH A 94 494 108 HOH HOH . E 4 HOH A 95 495 82 HOH HOH . E 4 HOH A 96 496 122 HOH HOH . E 4 HOH A 97 497 29 HOH HOH . E 4 HOH A 98 498 131 HOH HOH . E 4 HOH A 99 499 45 HOH HOH . E 4 HOH A 100 500 78 HOH HOH . E 4 HOH A 101 501 47 HOH HOH . E 4 HOH A 102 502 18 HOH HOH . E 4 HOH A 103 503 54 HOH HOH . E 4 HOH A 104 504 23 HOH HOH . E 4 HOH A 105 505 56 HOH HOH . E 4 HOH A 106 506 106 HOH HOH . E 4 HOH A 107 507 21 HOH HOH . E 4 HOH A 108 508 14 HOH HOH . E 4 HOH A 109 509 86 HOH HOH . E 4 HOH A 110 510 66 HOH HOH . E 4 HOH A 111 511 145 HOH HOH . E 4 HOH A 112 512 80 HOH HOH . E 4 HOH A 113 513 111 HOH HOH . E 4 HOH A 114 514 94 HOH HOH . E 4 HOH A 115 515 72 HOH HOH . E 4 HOH A 116 516 141 HOH HOH . E 4 HOH A 117 517 128 HOH HOH . E 4 HOH A 118 518 142 HOH HOH . E 4 HOH A 119 519 87 HOH HOH . E 4 HOH A 120 520 65 HOH HOH . E 4 HOH A 121 521 146 HOH HOH . E 4 HOH A 122 522 130 HOH HOH . E 4 HOH A 123 523 125 HOH HOH . E 4 HOH A 124 524 120 HOH HOH . E 4 HOH A 125 525 55 HOH HOH . E 4 HOH A 126 526 117 HOH HOH . E 4 HOH A 127 527 32 HOH HOH . E 4 HOH A 128 528 76 HOH HOH . E 4 HOH A 129 529 132 HOH HOH . E 4 HOH A 130 530 57 HOH HOH . E 4 HOH A 131 531 93 HOH HOH . E 4 HOH A 132 532 99 HOH HOH . E 4 HOH A 133 533 71 HOH HOH . E 4 HOH A 134 534 138 HOH HOH . E 4 HOH A 135 535 107 HOH HOH . E 4 HOH A 136 536 126 HOH HOH . E 4 HOH A 137 537 135 HOH HOH . E 4 HOH A 138 538 103 HOH HOH . E 4 HOH A 139 539 109 HOH HOH . E 4 HOH A 140 540 136 HOH HOH . E 4 HOH A 141 541 81 HOH HOH . E 4 HOH A 142 542 104 HOH HOH . E 4 HOH A 143 543 112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.003 _atom_site.Cartn_y 3.419 _atom_site.Cartn_z 47.329 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #