data_8VIT # _model_server_result.job_id kHrRW9azjvFUqOriigWPYw _model_server_result.datetime_utc '2024-11-16 18:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8VIT # _exptl.entry_id 8VIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VIT _cell.length_a 42.936 _cell.length_b 57.094 _cell.length_c 81.029 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 32 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 A OD1 ASP 58 A ASP 38 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 A OD2 ASP 58 A ASP 38 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A OD1 ASP 60 A ASP 40 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc5 A OD2 ASP 60 A ASP 40 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 B O3B ADP . A ADP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc7 B O2A ADP . A ADP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 B O3B ADP . A ADP 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 C MG MG . A MG 302 1_555 F O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc10 D MG MG . A MG 303 1_555 F O HOH . A HOH 409 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc11 D MG MG . A MG 303 1_555 F O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc12 D MG MG . A MG 303 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 281 n n O1 HO1 PG4 sing 282 n n C1 C2 PG4 sing 283 n n C1 H11 PG4 sing 284 n n C1 H12 PG4 sing 285 n n C2 O2 PG4 sing 286 n n C2 H21 PG4 sing 287 n n C2 H22 PG4 sing 288 n n O2 C3 PG4 sing 289 n n C3 C4 PG4 sing 290 n n C3 H31 PG4 sing 291 n n C3 H32 PG4 sing 292 n n C4 O3 PG4 sing 293 n n C4 H41 PG4 sing 294 n n C4 H42 PG4 sing 295 n n O3 C5 PG4 sing 296 n n C5 C6 PG4 sing 297 n n C5 H51 PG4 sing 298 n n C5 H52 PG4 sing 299 n n C6 O4 PG4 sing 300 n n C6 H61 PG4 sing 301 n n C6 H62 PG4 sing 302 n n O4 C7 PG4 sing 303 n n C7 C8 PG4 sing 304 n n C7 H71 PG4 sing 305 n n C7 H72 PG4 sing 306 n n C8 O5 PG4 sing 307 n n C8 H81 PG4 sing 308 n n C8 H82 PG4 sing 309 n n O5 HO5 PG4 sing 310 n n # _atom_sites.entry_id 8VIT _atom_sites.fract_transf_matrix[1][1] 0.02329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 301 1 ADP ADP . C 3 MG A 1 302 1 MG MG . D 3 MG A 1 303 2 MG MG . E 4 PG4 A 1 304 1 PG4 PG4 . F 5 HOH A 1 401 117 HOH HOH . F 5 HOH A 2 402 130 HOH HOH . F 5 HOH A 3 403 143 HOH HOH . F 5 HOH A 4 404 50 HOH HOH . F 5 HOH A 5 405 171 HOH HOH . F 5 HOH A 6 406 100 HOH HOH . F 5 HOH A 7 407 39 HOH HOH . F 5 HOH A 8 408 62 HOH HOH . F 5 HOH A 9 409 8 HOH HOH . F 5 HOH A 10 410 55 HOH HOH . F 5 HOH A 11 411 126 HOH HOH . F 5 HOH A 12 412 91 HOH HOH . F 5 HOH A 13 413 134 HOH HOH . F 5 HOH A 14 414 89 HOH HOH . F 5 HOH A 15 415 72 HOH HOH . F 5 HOH A 16 416 52 HOH HOH . F 5 HOH A 17 417 177 HOH HOH . F 5 HOH A 18 418 101 HOH HOH . F 5 HOH A 19 419 118 HOH HOH . F 5 HOH A 20 420 54 HOH HOH . F 5 HOH A 21 421 46 HOH HOH . F 5 HOH A 22 422 121 HOH HOH . F 5 HOH A 23 423 154 HOH HOH . F 5 HOH A 24 424 78 HOH HOH . F 5 HOH A 25 425 75 HOH HOH . F 5 HOH A 26 426 112 HOH HOH . F 5 HOH A 27 427 6 HOH HOH . F 5 HOH A 28 428 14 HOH HOH . F 5 HOH A 29 429 92 HOH HOH . F 5 HOH A 30 430 11 HOH HOH . F 5 HOH A 31 431 43 HOH HOH . F 5 HOH A 32 432 2 HOH HOH . F 5 HOH A 33 433 127 HOH HOH . F 5 HOH A 34 434 105 HOH HOH . F 5 HOH A 35 435 114 HOH HOH . F 5 HOH A 36 436 56 HOH HOH . F 5 HOH A 37 437 152 HOH HOH . F 5 HOH A 38 438 20 HOH HOH . F 5 HOH A 39 439 64 HOH HOH . F 5 HOH A 40 440 68 HOH HOH . F 5 HOH A 41 441 16 HOH HOH . F 5 HOH A 42 442 33 HOH HOH . F 5 HOH A 43 443 27 HOH HOH . F 5 HOH A 44 444 106 HOH HOH . F 5 HOH A 45 445 45 HOH HOH . F 5 HOH A 46 446 88 HOH HOH . F 5 HOH A 47 447 140 HOH HOH . F 5 HOH A 48 448 17 HOH HOH . F 5 HOH A 49 449 40 HOH HOH . F 5 HOH A 50 450 168 HOH HOH . F 5 HOH A 51 451 158 HOH HOH . F 5 HOH A 52 452 113 HOH HOH . F 5 HOH A 53 453 18 HOH HOH . F 5 HOH A 54 454 146 HOH HOH . F 5 HOH A 55 455 48 HOH HOH . F 5 HOH A 56 456 66 HOH HOH . F 5 HOH A 57 457 120 HOH HOH . F 5 HOH A 58 458 4 HOH HOH . F 5 HOH A 59 459 181 HOH HOH . F 5 HOH A 60 460 3 HOH HOH . F 5 HOH A 61 461 22 HOH HOH . F 5 HOH A 62 462 80 HOH HOH . F 5 HOH A 63 463 164 HOH HOH . F 5 HOH A 64 464 5 HOH HOH . F 5 HOH A 65 465 1 HOH HOH . F 5 HOH A 66 466 82 HOH HOH . F 5 HOH A 67 467 139 HOH HOH . F 5 HOH A 68 468 41 HOH HOH . F 5 HOH A 69 469 15 HOH HOH . F 5 HOH A 70 470 102 HOH HOH . F 5 HOH A 71 471 10 HOH HOH . F 5 HOH A 72 472 44 HOH HOH . F 5 HOH A 73 473 136 HOH HOH . F 5 HOH A 74 474 124 HOH HOH . F 5 HOH A 75 475 19 HOH HOH . F 5 HOH A 76 476 132 HOH HOH . F 5 HOH A 77 477 7 HOH HOH . F 5 HOH A 78 478 13 HOH HOH . F 5 HOH A 79 479 21 HOH HOH . F 5 HOH A 80 480 162 HOH HOH . F 5 HOH A 81 481 86 HOH HOH . F 5 HOH A 82 482 85 HOH HOH . F 5 HOH A 83 483 30 HOH HOH . F 5 HOH A 84 484 99 HOH HOH . F 5 HOH A 85 485 53 HOH HOH . F 5 HOH A 86 486 24 HOH HOH . F 5 HOH A 87 487 103 HOH HOH . F 5 HOH A 88 488 9 HOH HOH . F 5 HOH A 89 489 141 HOH HOH . F 5 HOH A 90 490 25 HOH HOH . F 5 HOH A 91 491 47 HOH HOH . F 5 HOH A 92 492 119 HOH HOH . F 5 HOH A 93 493 34 HOH HOH . F 5 HOH A 94 494 36 HOH HOH . F 5 HOH A 95 495 182 HOH HOH . F 5 HOH A 96 496 153 HOH HOH . F 5 HOH A 97 497 122 HOH HOH . F 5 HOH A 98 498 147 HOH HOH . F 5 HOH A 99 499 173 HOH HOH . F 5 HOH A 100 500 38 HOH HOH . F 5 HOH A 101 501 57 HOH HOH . F 5 HOH A 102 502 32 HOH HOH . F 5 HOH A 103 503 28 HOH HOH . F 5 HOH A 104 504 87 HOH HOH . F 5 HOH A 105 505 49 HOH HOH . F 5 HOH A 106 506 42 HOH HOH . F 5 HOH A 107 507 104 HOH HOH . F 5 HOH A 108 508 35 HOH HOH . F 5 HOH A 109 509 31 HOH HOH . F 5 HOH A 110 510 174 HOH HOH . F 5 HOH A 111 511 96 HOH HOH . F 5 HOH A 112 512 29 HOH HOH . F 5 HOH A 113 513 83 HOH HOH . F 5 HOH A 114 514 179 HOH HOH . F 5 HOH A 115 515 116 HOH HOH . F 5 HOH A 116 516 133 HOH HOH . F 5 HOH A 117 517 23 HOH HOH . F 5 HOH A 118 518 84 HOH HOH . F 5 HOH A 119 519 144 HOH HOH . F 5 HOH A 120 520 178 HOH HOH . F 5 HOH A 121 521 148 HOH HOH . F 5 HOH A 122 522 76 HOH HOH . F 5 HOH A 123 523 108 HOH HOH . F 5 HOH A 124 524 79 HOH HOH . F 5 HOH A 125 525 97 HOH HOH . F 5 HOH A 126 526 172 HOH HOH . F 5 HOH A 127 527 51 HOH HOH . F 5 HOH A 128 528 67 HOH HOH . F 5 HOH A 129 529 73 HOH HOH . F 5 HOH A 130 530 115 HOH HOH . F 5 HOH A 131 531 137 HOH HOH . F 5 HOH A 132 532 98 HOH HOH . F 5 HOH A 133 533 155 HOH HOH . F 5 HOH A 134 534 135 HOH HOH . F 5 HOH A 135 535 26 HOH HOH . F 5 HOH A 136 536 167 HOH HOH . F 5 HOH A 137 537 65 HOH HOH . F 5 HOH A 138 538 176 HOH HOH . F 5 HOH A 139 539 37 HOH HOH . F 5 HOH A 140 540 93 HOH HOH . F 5 HOH A 141 541 12 HOH HOH . F 5 HOH A 142 542 129 HOH HOH . F 5 HOH A 143 543 180 HOH HOH . F 5 HOH A 144 544 131 HOH HOH . F 5 HOH A 145 545 110 HOH HOH . F 5 HOH A 146 546 109 HOH HOH . F 5 HOH A 147 547 60 HOH HOH . F 5 HOH A 148 548 74 HOH HOH . F 5 HOH A 149 549 70 HOH HOH . F 5 HOH A 150 550 123 HOH HOH . F 5 HOH A 151 551 150 HOH HOH . F 5 HOH A 152 552 183 HOH HOH . F 5 HOH A 153 553 94 HOH HOH . F 5 HOH A 154 554 77 HOH HOH . F 5 HOH A 155 555 169 HOH HOH . F 5 HOH A 156 556 95 HOH HOH . F 5 HOH A 157 557 138 HOH HOH . F 5 HOH A 158 558 58 HOH HOH . F 5 HOH A 159 559 170 HOH HOH . F 5 HOH A 160 560 59 HOH HOH . F 5 HOH A 161 561 111 HOH HOH . F 5 HOH A 162 562 142 HOH HOH . F 5 HOH A 163 563 186 HOH HOH . F 5 HOH A 164 564 184 HOH HOH . F 5 HOH A 165 565 160 HOH HOH . F 5 HOH A 166 566 149 HOH HOH . F 5 HOH A 167 567 161 HOH HOH . F 5 HOH A 168 568 81 HOH HOH . F 5 HOH A 169 569 90 HOH HOH . F 5 HOH A 170 570 145 HOH HOH . F 5 HOH A 171 571 166 HOH HOH . F 5 HOH A 172 572 151 HOH HOH . F 5 HOH A 173 573 165 HOH HOH . F 5 HOH A 174 574 125 HOH HOH . F 5 HOH A 175 575 175 HOH HOH . F 5 HOH A 176 576 156 HOH HOH . F 5 HOH A 177 577 185 HOH HOH . F 5 HOH A 178 578 61 HOH HOH . F 5 HOH A 179 579 63 HOH HOH . F 5 HOH A 180 580 157 HOH HOH . F 5 HOH A 181 581 69 HOH HOH . F 5 HOH A 182 582 71 HOH HOH . F 5 HOH A 183 583 163 HOH HOH . F 5 HOH A 184 584 107 HOH HOH . F 5 HOH A 185 585 159 HOH HOH . F 5 HOH A 186 586 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PG4 . . . E 4 -20.659 3.89 -6.583 1 44.94 ? C2 PG4 304 A 1 HETATM 2 O O2 PG4 . . . E 4 -19.465 3.68 -5.836 1 44.01 ? O2 PG4 304 A 1 HETATM 3 C C3 PG4 . . . E 4 -18.275 3.893 -6.591 1 42.93 ? C3 PG4 304 A 1 HETATM 4 C C4 PG4 . . . E 4 -17.999 5.359 -6.733 1 42.1 ? C4 PG4 304 A 1 HETATM 5 O O3 PG4 . . . E 4 -17.812 5.943 -5.448 1 41.24 ? O3 PG4 304 A 1 HETATM 6 C C5 PG4 . . . E 4 -17.497 7.329 -5.519 1 40.95 ? C5 PG4 304 A 1 HETATM 7 C C6 PG4 . . . E 4 -17.607 7.956 -4.163 1 41.17 ? C6 PG4 304 A 1 HETATM 8 O O4 PG4 . . . E 4 -18.902 7.711 -3.626 1 41.61 ? O4 PG4 304 A 1 HETATM 9 C C7 PG4 . . . E 4 -19.208 8.542 -2.512 1 42.78 ? C7 PG4 304 A 1 HETATM 10 C C8 PG4 . . . E 4 -20.463 8.066 -1.851 1 43.47 ? C8 PG4 304 A 1 HETATM 11 O O5 PG4 . . . E 4 -20.314 6.778 -1.286 1 44.13 ? O5 PG4 304 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #