data_8VJ0 # _model_server_result.job_id RIQPB4enFIAsU-UhfXR7lA _model_server_result.datetime_utc '2024-10-11 21:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8VJ0 # _exptl.entry_id 8VJ0 _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VJ0 _cell.length_a 80.75 _cell.length_b 80.75 _cell.length_c 239.43 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 40.375 69.931551 199.525 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 27 A HIS 26 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A NE2 HIS 75 A HIS 74 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 A OD2 ASP 160 A ASP 159 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc4 A NE2 HIS 164 A HIS 163 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 C MN MN . A MN 201 1_555 E O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? metalc ? metalc6 B NE2 HIS 27 B HIS 26 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc7 B NE2 HIS 75 B HIS 74 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc8 B OD2 ASP 160 B ASP 159 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc9 B NE2 HIS 164 B HIS 163 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 D MN MN . B MN 201 1_555 F O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VJ0 _atom_sites.fract_transf_matrix[1][1] 0.012384 _atom_sites.fract_transf_matrix[1][2] 0.00715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 201 MN MN . D 2 MN B 1 201 201 MN MN . E 3 HOH A 1 301 41 HOH HOH . E 3 HOH A 2 302 231 HOH HOH . E 3 HOH A 3 303 58 HOH HOH . E 3 HOH A 4 304 235 HOH HOH . E 3 HOH A 5 305 224 HOH HOH . E 3 HOH A 6 306 205 HOH HOH . E 3 HOH A 7 307 223 HOH HOH . E 3 HOH A 8 308 83 HOH HOH . E 3 HOH A 9 309 237 HOH HOH . E 3 HOH A 10 310 202 HOH HOH . E 3 HOH A 11 311 213 HOH HOH . E 3 HOH A 12 312 86 HOH HOH . E 3 HOH A 13 313 204 HOH HOH . E 3 HOH A 14 314 43 HOH HOH . E 3 HOH A 15 315 64 HOH HOH . E 3 HOH A 16 316 28 HOH HOH . E 3 HOH A 17 317 236 HOH HOH . E 3 HOH A 18 318 68 HOH HOH . E 3 HOH A 19 319 240 HOH HOH . E 3 HOH A 20 320 206 HOH HOH . E 3 HOH A 21 321 203 HOH HOH . E 3 HOH A 22 322 57 HOH HOH . E 3 HOH A 23 323 82 HOH HOH . E 3 HOH A 24 324 238 HOH HOH . E 3 HOH A 25 325 218 HOH HOH . E 3 HOH A 26 326 67 HOH HOH . E 3 HOH A 27 327 63 HOH HOH . E 3 HOH A 28 328 6 HOH HOH . E 3 HOH A 29 329 208 HOH HOH . E 3 HOH A 30 330 210 HOH HOH . E 3 HOH A 31 331 46 HOH HOH . E 3 HOH A 32 332 207 HOH HOH . E 3 HOH A 33 333 80 HOH HOH . E 3 HOH A 34 334 2 HOH HOH . E 3 HOH A 35 335 42 HOH HOH . E 3 HOH A 36 336 228 HOH HOH . E 3 HOH A 37 337 212 HOH HOH . E 3 HOH A 38 338 229 HOH HOH . E 3 HOH A 39 339 47 HOH HOH . E 3 HOH A 40 340 226 HOH HOH . E 3 HOH A 41 341 70 HOH HOH . E 3 HOH A 42 342 8 HOH HOH . E 3 HOH A 43 343 209 HOH HOH . E 3 HOH A 44 344 12 HOH HOH . E 3 HOH A 45 345 22 HOH HOH . E 3 HOH A 46 346 222 HOH HOH . E 3 HOH A 47 347 54 HOH HOH . E 3 HOH A 48 348 221 HOH HOH . E 3 HOH A 49 349 49 HOH HOH . E 3 HOH A 50 350 78 HOH HOH . E 3 HOH A 51 351 94 HOH HOH . E 3 HOH A 52 352 69 HOH HOH . E 3 HOH A 53 353 218 HOH HOH . E 3 HOH A 54 354 3 HOH HOH . E 3 HOH A 55 355 56 HOH HOH . E 3 HOH A 56 356 233 HOH HOH . E 3 HOH A 57 357 239 HOH HOH . E 3 HOH A 58 358 225 HOH HOH . E 3 HOH A 59 359 85 HOH HOH . E 3 HOH A 60 360 4 HOH HOH . E 3 HOH A 61 361 215 HOH HOH . E 3 HOH A 62 362 230 HOH HOH . E 3 HOH A 63 363 214 HOH HOH . E 3 HOH A 64 364 84 HOH HOH . E 3 HOH A 65 365 60 HOH HOH . E 3 HOH A 66 366 71 HOH HOH . E 3 HOH A 67 367 7 HOH HOH . E 3 HOH A 68 368 87 HOH HOH . E 3 HOH A 69 369 61 HOH HOH . E 3 HOH A 70 370 227 HOH HOH . E 3 HOH A 71 371 91 HOH HOH . E 3 HOH A 72 372 40 HOH HOH . E 3 HOH A 73 373 232 HOH HOH . E 3 HOH A 74 374 98 HOH HOH . E 3 HOH A 75 375 219 HOH HOH . E 3 HOH A 76 376 217 HOH HOH . E 3 HOH A 77 377 216 HOH HOH . E 3 HOH A 78 378 62 HOH HOH . E 3 HOH A 79 379 79 HOH HOH . E 3 HOH A 80 380 220 HOH HOH . E 3 HOH A 81 381 66 HOH HOH . E 3 HOH A 82 382 234 HOH HOH . F 3 HOH B 1 301 16 HOH HOH . F 3 HOH B 2 302 227 HOH HOH . F 3 HOH B 3 303 73 HOH HOH . F 3 HOH B 4 304 35 HOH HOH . F 3 HOH B 5 305 89 HOH HOH . F 3 HOH B 6 306 38 HOH HOH . F 3 HOH B 7 307 5 HOH HOH . F 3 HOH B 8 308 17 HOH HOH . F 3 HOH B 9 309 19 HOH HOH . F 3 HOH B 10 310 223 HOH HOH . F 3 HOH B 11 311 44 HOH HOH . F 3 HOH B 12 312 202 HOH HOH . F 3 HOH B 13 313 59 HOH HOH . F 3 HOH B 14 314 37 HOH HOH . F 3 HOH B 15 315 90 HOH HOH . F 3 HOH B 16 316 211 HOH HOH . F 3 HOH B 17 317 9 HOH HOH . F 3 HOH B 18 318 88 HOH HOH . F 3 HOH B 19 319 45 HOH HOH . F 3 HOH B 20 320 101 HOH HOH . F 3 HOH B 21 321 204 HOH HOH . F 3 HOH B 22 322 1 HOH HOH . F 3 HOH B 23 323 75 HOH HOH . F 3 HOH B 24 324 104 HOH HOH . F 3 HOH B 25 325 206 HOH HOH . F 3 HOH B 26 326 31 HOH HOH . F 3 HOH B 27 327 219 HOH HOH . F 3 HOH B 28 328 207 HOH HOH . F 3 HOH B 29 329 213 HOH HOH . F 3 HOH B 30 330 220 HOH HOH . F 3 HOH B 31 331 221 HOH HOH . F 3 HOH B 32 332 36 HOH HOH . F 3 HOH B 33 333 211 HOH HOH . F 3 HOH B 34 334 225 HOH HOH . F 3 HOH B 35 335 93 HOH HOH . F 3 HOH B 36 336 103 HOH HOH . F 3 HOH B 37 337 55 HOH HOH . F 3 HOH B 38 338 11 HOH HOH . F 3 HOH B 39 339 32 HOH HOH . F 3 HOH B 40 340 105 HOH HOH . F 3 HOH B 41 341 102 HOH HOH . F 3 HOH B 42 342 30 HOH HOH . F 3 HOH B 43 343 106 HOH HOH . F 3 HOH B 44 344 34 HOH HOH . F 3 HOH B 45 345 208 HOH HOH . F 3 HOH B 46 346 226 HOH HOH . F 3 HOH B 47 347 205 HOH HOH . F 3 HOH B 48 348 209 HOH HOH . F 3 HOH B 49 349 95 HOH HOH . F 3 HOH B 50 350 77 HOH HOH . F 3 HOH B 51 351 65 HOH HOH . F 3 HOH B 52 352 27 HOH HOH . F 3 HOH B 53 353 13 HOH HOH . F 3 HOH B 54 354 222 HOH HOH . F 3 HOH B 55 355 39 HOH HOH . F 3 HOH B 56 356 81 HOH HOH . F 3 HOH B 57 357 228 HOH HOH . F 3 HOH B 58 358 26 HOH HOH . F 3 HOH B 59 359 76 HOH HOH . F 3 HOH B 60 360 25 HOH HOH . F 3 HOH B 61 361 15 HOH HOH . F 3 HOH B 62 362 29 HOH HOH . F 3 HOH B 63 363 100 HOH HOH . F 3 HOH B 64 364 21 HOH HOH . F 3 HOH B 65 365 203 HOH HOH . F 3 HOH B 66 366 92 HOH HOH . F 3 HOH B 67 367 50 HOH HOH . F 3 HOH B 68 368 10 HOH HOH . F 3 HOH B 69 369 72 HOH HOH . F 3 HOH B 70 370 217 HOH HOH . F 3 HOH B 71 371 214 HOH HOH . F 3 HOH B 72 372 229 HOH HOH . F 3 HOH B 73 373 74 HOH HOH . F 3 HOH B 74 374 14 HOH HOH . F 3 HOH B 75 375 212 HOH HOH . F 3 HOH B 76 376 215 HOH HOH . F 3 HOH B 77 377 51 HOH HOH . F 3 HOH B 78 378 20 HOH HOH . F 3 HOH B 79 379 18 HOH HOH . F 3 HOH B 80 380 210 HOH HOH . F 3 HOH B 81 381 224 HOH HOH . F 3 HOH B 82 382 48 HOH HOH . F 3 HOH B 83 383 99 HOH HOH . F 3 HOH B 84 384 96 HOH HOH . F 3 HOH B 85 385 53 HOH HOH . F 3 HOH B 86 386 52 HOH HOH . F 3 HOH B 87 387 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 50.432 _atom_site.Cartn_y 24.909 _atom_site.Cartn_z 93.109 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #