data_8VJE # _model_server_result.job_id 5ODL5OHKkDswALW9eGgrmg _model_server_result.datetime_utc '2024-11-23 10:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 8VJE # _exptl.entry_id 8VJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VJE _cell.length_a 69.107 _cell.length_b 69.107 _cell.length_c 79.03 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 116 A CYS 113 1_555 B CH3 ACE 1 B ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N PHE 2 B PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B C PHE 2 B PHE 2 1_555 B N YCP 3 B YCP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B C YCP 3 B YCP 3 1_555 B N A1A2Y 4 B A1A2Y 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B C A1A2Y 4 B A1A2Y 4 1_555 B N NH2 5 B NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 121 n n S1 HS1 DTT sing 122 n n C1 C2 DTT sing 123 n n C1 H11 DTT sing 124 n n C1 H12 DTT sing 125 n n C2 O2 DTT sing 126 n n C2 C3 DTT sing 127 n n C2 H2 DTT sing 128 n n O2 HO2 DTT sing 129 n n C3 O3 DTT sing 130 n n C3 C4 DTT sing 131 n n C3 H3 DTT sing 132 n n O3 HO3 DTT sing 133 n n C4 S4 DTT sing 134 n n C4 H41 DTT sing 135 n n C4 H42 DTT sing 136 n n S4 HS2 DTT sing 137 n n # _atom_sites.entry_id 8VJE _atom_sites.fract_transf_matrix[1][1] 0.01447 _atom_sites.fract_transf_matrix[1][2] 0.008354 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 201 1 SO4 SO4 . D 3 SO4 A 1 202 2 SO4 SO4 . E 3 SO4 A 1 203 4 SO4 SO4 . F 3 SO4 A 1 204 5 SO4 SO4 . G 3 SO4 A 1 205 7 SO4 SO4 . H 4 DTT A 1 206 101 DTT DTT . I 5 P33 A 1 207 102 P33 PEG . J 6 HOH A 1 301 207 HOH HOH . J 6 HOH A 2 302 198 HOH HOH . J 6 HOH A 3 303 4 HOH HOH . J 6 HOH A 4 304 193 HOH HOH . J 6 HOH A 5 305 115 HOH HOH . J 6 HOH A 6 306 55 HOH HOH . J 6 HOH A 7 307 170 HOH HOH . J 6 HOH A 8 308 89 HOH HOH . J 6 HOH A 9 309 192 HOH HOH . J 6 HOH A 10 310 99 HOH HOH . J 6 HOH A 11 311 86 HOH HOH . J 6 HOH A 12 312 125 HOH HOH . J 6 HOH A 13 313 11 HOH HOH . J 6 HOH A 14 314 121 HOH HOH . J 6 HOH A 15 315 62 HOH HOH . J 6 HOH A 16 316 16 HOH HOH . J 6 HOH A 17 317 177 HOH HOH . J 6 HOH A 18 318 77 HOH HOH . J 6 HOH A 19 319 12 HOH HOH . J 6 HOH A 20 320 94 HOH HOH . J 6 HOH A 21 321 71 HOH HOH . J 6 HOH A 22 322 97 HOH HOH . J 6 HOH A 23 323 107 HOH HOH . J 6 HOH A 24 324 37 HOH HOH . J 6 HOH A 25 325 142 HOH HOH . J 6 HOH A 26 326 33 HOH HOH . J 6 HOH A 27 327 205 HOH HOH . J 6 HOH A 28 328 85 HOH HOH . J 6 HOH A 29 329 91 HOH HOH . J 6 HOH A 30 330 56 HOH HOH . J 6 HOH A 31 331 160 HOH HOH . J 6 HOH A 32 332 48 HOH HOH . J 6 HOH A 33 333 168 HOH HOH . J 6 HOH A 34 334 46 HOH HOH . J 6 HOH A 35 335 47 HOH HOH . J 6 HOH A 36 336 13 HOH HOH . J 6 HOH A 37 337 114 HOH HOH . J 6 HOH A 38 338 23 HOH HOH . J 6 HOH A 39 339 109 HOH HOH . J 6 HOH A 40 340 36 HOH HOH . J 6 HOH A 41 341 15 HOH HOH . J 6 HOH A 42 342 195 HOH HOH . J 6 HOH A 43 343 57 HOH HOH . J 6 HOH A 44 344 175 HOH HOH . J 6 HOH A 45 345 2 HOH HOH . J 6 HOH A 46 346 74 HOH HOH . J 6 HOH A 47 347 176 HOH HOH . J 6 HOH A 48 348 79 HOH HOH . J 6 HOH A 49 349 103 HOH HOH . J 6 HOH A 50 350 151 HOH HOH . J 6 HOH A 51 351 134 HOH HOH . J 6 HOH A 52 352 17 HOH HOH . J 6 HOH A 53 353 60 HOH HOH . J 6 HOH A 54 354 111 HOH HOH . J 6 HOH A 55 355 139 HOH HOH . J 6 HOH A 56 356 172 HOH HOH . J 6 HOH A 57 357 10 HOH HOH . J 6 HOH A 58 358 21 HOH HOH . J 6 HOH A 59 359 58 HOH HOH . J 6 HOH A 60 360 155 HOH HOH . J 6 HOH A 61 361 141 HOH HOH . J 6 HOH A 62 362 20 HOH HOH . J 6 HOH A 63 363 202 HOH HOH . J 6 HOH A 64 364 180 HOH HOH . J 6 HOH A 65 365 96 HOH HOH . J 6 HOH A 66 366 25 HOH HOH . J 6 HOH A 67 367 105 HOH HOH . J 6 HOH A 68 368 88 HOH HOH . J 6 HOH A 69 369 34 HOH HOH . J 6 HOH A 70 370 14 HOH HOH . J 6 HOH A 71 371 188 HOH HOH . J 6 HOH A 72 372 95 HOH HOH . J 6 HOH A 73 373 90 HOH HOH . J 6 HOH A 74 374 174 HOH HOH . J 6 HOH A 75 375 98 HOH HOH . J 6 HOH A 76 376 6 HOH HOH . J 6 HOH A 77 377 171 HOH HOH . J 6 HOH A 78 378 28 HOH HOH . J 6 HOH A 79 379 204 HOH HOH . J 6 HOH A 80 380 66 HOH HOH . J 6 HOH A 81 381 18 HOH HOH . J 6 HOH A 82 382 61 HOH HOH . J 6 HOH A 83 383 1 HOH HOH . J 6 HOH A 84 384 7 HOH HOH . J 6 HOH A 85 385 145 HOH HOH . J 6 HOH A 86 386 209 HOH HOH . J 6 HOH A 87 387 68 HOH HOH . J 6 HOH A 88 388 212 HOH HOH . J 6 HOH A 89 389 102 HOH HOH . J 6 HOH A 90 390 213 HOH HOH . J 6 HOH A 91 391 51 HOH HOH . J 6 HOH A 92 392 164 HOH HOH . J 6 HOH A 93 393 73 HOH HOH . J 6 HOH A 94 394 32 HOH HOH . J 6 HOH A 95 395 29 HOH HOH . J 6 HOH A 96 396 116 HOH HOH . J 6 HOH A 97 397 161 HOH HOH . J 6 HOH A 98 398 154 HOH HOH . J 6 HOH A 99 399 165 HOH HOH . J 6 HOH A 100 400 104 HOH HOH . J 6 HOH A 101 401 100 HOH HOH . J 6 HOH A 102 402 110 HOH HOH . J 6 HOH A 103 403 149 HOH HOH . J 6 HOH A 104 404 156 HOH HOH . J 6 HOH A 105 405 52 HOH HOH . J 6 HOH A 106 406 206 HOH HOH . J 6 HOH A 107 407 194 HOH HOH . J 6 HOH A 108 408 138 HOH HOH . J 6 HOH A 109 409 179 HOH HOH . J 6 HOH A 110 410 64 HOH HOH . J 6 HOH A 111 411 130 HOH HOH . J 6 HOH A 112 412 124 HOH HOH . J 6 HOH A 113 413 9 HOH HOH . J 6 HOH A 114 414 22 HOH HOH . J 6 HOH A 115 415 53 HOH HOH . J 6 HOH A 116 416 137 HOH HOH . J 6 HOH A 117 417 152 HOH HOH . J 6 HOH A 118 418 35 HOH HOH . J 6 HOH A 119 419 148 HOH HOH . J 6 HOH A 120 420 191 HOH HOH . J 6 HOH A 121 421 182 HOH HOH . J 6 HOH A 122 422 169 HOH HOH . J 6 HOH A 123 423 203 HOH HOH . J 6 HOH A 124 424 49 HOH HOH . J 6 HOH A 125 425 76 HOH HOH . J 6 HOH A 126 426 183 HOH HOH . J 6 HOH A 127 427 8 HOH HOH . J 6 HOH A 128 428 211 HOH HOH . J 6 HOH A 129 429 65 HOH HOH . J 6 HOH A 130 430 78 HOH HOH . J 6 HOH A 131 431 197 HOH HOH . J 6 HOH A 132 432 123 HOH HOH . J 6 HOH A 133 433 210 HOH HOH . J 6 HOH A 134 434 153 HOH HOH . J 6 HOH A 135 435 196 HOH HOH . J 6 HOH A 136 436 162 HOH HOH . J 6 HOH A 137 437 44 HOH HOH . J 6 HOH A 138 438 101 HOH HOH . J 6 HOH A 139 439 190 HOH HOH . J 6 HOH A 140 440 146 HOH HOH . J 6 HOH A 141 441 45 HOH HOH . J 6 HOH A 142 442 112 HOH HOH . J 6 HOH A 143 443 108 HOH HOH . J 6 HOH A 144 444 75 HOH HOH . J 6 HOH A 145 445 106 HOH HOH . J 6 HOH A 146 446 59 HOH HOH . J 6 HOH A 147 447 199 HOH HOH . J 6 HOH A 148 448 5 HOH HOH . J 6 HOH A 149 449 185 HOH HOH . J 6 HOH A 150 450 178 HOH HOH . J 6 HOH A 151 451 143 HOH HOH . J 6 HOH A 152 452 136 HOH HOH . J 6 HOH A 153 453 184 HOH HOH . J 6 HOH A 154 454 144 HOH HOH . K 6 HOH B 1 101 70 HOH HOH . K 6 HOH B 2 102 67 HOH HOH . K 6 HOH B 3 103 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . H 4 39.089 -34.819 13.595 1 59.06 ? S1 DTT 206 A 1 HETATM 2 C C1 DTT . . . H 4 39.368 -35.594 11.971 1 60.46 ? C1 DTT 206 A 1 HETATM 3 C C2 DTT . . . H 4 40.766 -35.439 11.37 1 53.48 ? C2 DTT 206 A 1 HETATM 4 O O2 DTT . . . H 4 40.687 -34.844 10.091 1 44.55 ? O2 DTT 206 A 1 HETATM 5 C C3 DTT . . . H 4 41.375 -36.809 11.14 1 67.08 ? C3 DTT 206 A 1 HETATM 6 O O3 DTT . . . H 4 40.81 -37.32 9.952 1 79.12 ? O3 DTT 206 A 1 HETATM 7 C C4 DTT . . . H 4 42.902 -36.774 11.035 1 77.07 ? C4 DTT 206 A 1 HETATM 8 S S4 DTT . . . H 4 43.592 -35.373 10.11 1 68.69 ? S4 DTT 206 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 8 #