data_8VJF # _model_server_result.job_id 4W_iOUjK-NYR-bv5esxC1A _model_server_result.datetime_utc '2025-08-24 10:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8VJF # _exptl.entry_id 8VJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VJF _cell.length_a 68.867 _cell.length_b 68.867 _cell.length_c 78.738 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 116 A CYS 113 1_555 B CH3 ACE 1 B ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N MTY 2 B MTY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 B C MTY 2 B MTY 2 1_555 B N YCP 3 B YCP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale4 B C YCP 3 B YCP 3 1_555 B N TRP 4 B TRP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale5 B C TRP 4 B TRP 4 1_555 B N NH2 5 B NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 286 n n O22 H22 P33 sing 287 n n C21 C20 P33 sing 288 n n C21 H211 P33 sing 289 n n C21 H212 P33 sing 290 n n C20 O19 P33 sing 291 n n C20 H201 P33 sing 292 n n C20 H202 P33 sing 293 n n O19 C18 P33 sing 294 n n C18 C17 P33 sing 295 n n C18 H181 P33 sing 296 n n C18 H182 P33 sing 297 n n C17 O16 P33 sing 298 n n C17 H171 P33 sing 299 n n C17 H172 P33 sing 300 n n O16 C15 P33 sing 301 n n C15 C14 P33 sing 302 n n C15 H151 P33 sing 303 n n C15 H152 P33 sing 304 n n C14 O13 P33 sing 305 n n C14 H141 P33 sing 306 n n C14 H142 P33 sing 307 n n O13 C12 P33 sing 308 n n C12 C11 P33 sing 309 n n C12 H121 P33 sing 310 n n C12 H122 P33 sing 311 n n C11 O10 P33 sing 312 n n C11 H111 P33 sing 313 n n C11 H112 P33 sing 314 n n O10 C9 P33 sing 315 n n C9 C8 P33 sing 316 n n C9 H91 P33 sing 317 n n C9 H92 P33 sing 318 n n C8 O7 P33 sing 319 n n C8 H81 P33 sing 320 n n C8 H82 P33 sing 321 n n O7 C6 P33 sing 322 n n C6 C5 P33 sing 323 n n C6 H61 P33 sing 324 n n C6 H62 P33 sing 325 n n C5 O4 P33 sing 326 n n C5 H51 P33 sing 327 n n C5 H52 P33 sing 328 n n O4 C3 P33 sing 329 n n C3 C2 P33 sing 330 n n C3 H31 P33 sing 331 n n C3 H32 P33 sing 332 n n C2 O1 P33 sing 333 n n C2 H21 P33 sing 334 n n C2 H22A P33 sing 335 n n O1 HO1 P33 sing 336 n n # _atom_sites.entry_id 8VJF _atom_sites.fract_transf_matrix[1][1] 0.014521 _atom_sites.fract_transf_matrix[1][2] 0.008384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P33 A 1 201 206 P33 PEG . D 4 DTT A 1 202 207 DTT DTT . E 5 SO4 A 1 203 2 SO4 SO4 . F 5 SO4 A 1 204 4 SO4 SO4 . G 5 SO4 A 1 205 5 SO4 SO4 . H 6 HOH A 1 301 197 HOH HOH . H 6 HOH A 2 302 62 HOH HOH . H 6 HOH A 3 303 115 HOH HOH . H 6 HOH A 4 304 5 HOH HOH . H 6 HOH A 5 305 85 HOH HOH . H 6 HOH A 6 306 18 HOH HOH . H 6 HOH A 7 307 121 HOH HOH . H 6 HOH A 8 308 212 HOH HOH . H 6 HOH A 9 309 205 HOH HOH . H 6 HOH A 10 310 55 HOH HOH . H 6 HOH A 11 311 37 HOH HOH . H 6 HOH A 12 312 91 HOH HOH . H 6 HOH A 13 313 2 HOH HOH . H 6 HOH A 14 314 177 HOH HOH . H 6 HOH A 15 315 89 HOH HOH . H 6 HOH A 16 316 203 HOH HOH . H 6 HOH A 17 317 46 HOH HOH . H 6 HOH A 18 318 214 HOH HOH . H 6 HOH A 19 319 103 HOH HOH . H 6 HOH A 20 320 77 HOH HOH . H 6 HOH A 21 321 21 HOH HOH . H 6 HOH A 22 322 68 HOH HOH . H 6 HOH A 23 323 99 HOH HOH . H 6 HOH A 24 324 172 HOH HOH . H 6 HOH A 25 325 23 HOH HOH . H 6 HOH A 26 326 195 HOH HOH . H 6 HOH A 27 327 17 HOH HOH . H 6 HOH A 28 328 66 HOH HOH . H 6 HOH A 29 329 111 HOH HOH . H 6 HOH A 30 330 33 HOH HOH . H 6 HOH A 31 331 86 HOH HOH . H 6 HOH A 32 332 56 HOH HOH . H 6 HOH A 33 333 114 HOH HOH . H 6 HOH A 34 334 79 HOH HOH . H 6 HOH A 35 335 28 HOH HOH . H 6 HOH A 36 336 47 HOH HOH . H 6 HOH A 37 337 109 HOH HOH . H 6 HOH A 38 338 180 HOH HOH . H 6 HOH A 39 339 13 HOH HOH . H 6 HOH A 40 340 57 HOH HOH . H 6 HOH A 41 341 151 HOH HOH . H 6 HOH A 42 342 139 HOH HOH . H 6 HOH A 43 343 204 HOH HOH . H 6 HOH A 44 344 58 HOH HOH . H 6 HOH A 45 345 36 HOH HOH . H 6 HOH A 46 346 96 HOH HOH . H 6 HOH A 47 347 74 HOH HOH . H 6 HOH A 48 348 171 HOH HOH . H 6 HOH A 49 349 61 HOH HOH . H 6 HOH A 50 350 10 HOH HOH . H 6 HOH A 51 351 88 HOH HOH . H 6 HOH A 52 352 11 HOH HOH . H 6 HOH A 53 353 202 HOH HOH . H 6 HOH A 54 354 71 HOH HOH . H 6 HOH A 55 355 32 HOH HOH . H 6 HOH A 56 356 25 HOH HOH . H 6 HOH A 57 357 14 HOH HOH . H 6 HOH A 58 358 175 HOH HOH . H 6 HOH A 59 359 60 HOH HOH . H 6 HOH A 60 360 34 HOH HOH . H 6 HOH A 61 361 170 HOH HOH . H 6 HOH A 62 362 207 HOH HOH . H 6 HOH A 63 363 188 HOH HOH . H 6 HOH A 64 364 4 HOH HOH . H 6 HOH A 65 365 94 HOH HOH . H 6 HOH A 66 366 53 HOH HOH . H 6 HOH A 67 367 15 HOH HOH . H 6 HOH A 68 368 6 HOH HOH . H 6 HOH A 69 369 176 HOH HOH . H 6 HOH A 70 370 98 HOH HOH . H 6 HOH A 71 371 160 HOH HOH . H 6 HOH A 72 372 107 HOH HOH . H 6 HOH A 73 373 174 HOH HOH . H 6 HOH A 74 374 51 HOH HOH . H 6 HOH A 75 375 141 HOH HOH . H 6 HOH A 76 376 102 HOH HOH . H 6 HOH A 77 377 100 HOH HOH . H 6 HOH A 78 378 154 HOH HOH . H 6 HOH A 79 379 194 HOH HOH . H 6 HOH A 80 380 134 HOH HOH . H 6 HOH A 81 381 16 HOH HOH . H 6 HOH A 82 382 20 HOH HOH . H 6 HOH A 83 383 196 HOH HOH . H 6 HOH A 84 384 152 HOH HOH . H 6 HOH A 85 385 110 HOH HOH . H 6 HOH A 86 386 125 HOH HOH . H 6 HOH A 87 387 104 HOH HOH . H 6 HOH A 88 388 213 HOH HOH . H 6 HOH A 89 389 12 HOH HOH . H 6 HOH A 90 390 65 HOH HOH . H 6 HOH A 91 391 73 HOH HOH . H 6 HOH A 92 392 209 HOH HOH . H 6 HOH A 93 393 35 HOH HOH . H 6 HOH A 94 394 191 HOH HOH . H 6 HOH A 95 395 155 HOH HOH . H 6 HOH A 96 396 161 HOH HOH . H 6 HOH A 97 397 206 HOH HOH . H 6 HOH A 98 398 101 HOH HOH . H 6 HOH A 99 399 116 HOH HOH . H 6 HOH A 100 400 95 HOH HOH . H 6 HOH A 101 401 165 HOH HOH . H 6 HOH A 102 402 148 HOH HOH . H 6 HOH A 103 403 105 HOH HOH . H 6 HOH A 104 404 190 HOH HOH . H 6 HOH A 105 405 90 HOH HOH . H 6 HOH A 106 406 9 HOH HOH . H 6 HOH A 107 407 182 HOH HOH . H 6 HOH A 108 408 198 HOH HOH . H 6 HOH A 109 409 156 HOH HOH . H 6 HOH A 110 410 124 HOH HOH . H 6 HOH A 111 411 76 HOH HOH . H 6 HOH A 112 412 106 HOH HOH . H 6 HOH A 113 413 164 HOH HOH . H 6 HOH A 114 414 138 HOH HOH . H 6 HOH A 115 415 169 HOH HOH . H 6 HOH A 116 416 29 HOH HOH . H 6 HOH A 117 417 52 HOH HOH . H 6 HOH A 118 418 211 HOH HOH . H 6 HOH A 119 419 49 HOH HOH . H 6 HOH A 120 420 183 HOH HOH . H 6 HOH A 121 421 22 HOH HOH . H 6 HOH A 122 422 97 HOH HOH . H 6 HOH A 123 423 130 HOH HOH . H 6 HOH A 124 424 44 HOH HOH . H 6 HOH A 125 425 8 HOH HOH . H 6 HOH A 126 426 78 HOH HOH . H 6 HOH A 127 427 162 HOH HOH . H 6 HOH A 128 428 123 HOH HOH . H 6 HOH A 129 429 137 HOH HOH . H 6 HOH A 130 430 108 HOH HOH . H 6 HOH A 131 431 45 HOH HOH . H 6 HOH A 132 432 146 HOH HOH . H 6 HOH A 133 433 153 HOH HOH . H 6 HOH A 134 434 179 HOH HOH . H 6 HOH A 135 435 75 HOH HOH . H 6 HOH A 136 436 64 HOH HOH . H 6 HOH A 137 437 59 HOH HOH . H 6 HOH A 138 438 112 HOH HOH . H 6 HOH A 139 439 122 HOH HOH . H 6 HOH A 140 440 185 HOH HOH . H 6 HOH A 141 441 199 HOH HOH . H 6 HOH A 142 442 144 HOH HOH . H 6 HOH A 143 443 136 HOH HOH . H 6 HOH A 144 444 143 HOH HOH . H 6 HOH A 145 445 178 HOH HOH . H 6 HOH A 146 446 184 HOH HOH . H 6 HOH A 147 447 210 HOH HOH . I 6 HOH B 1 101 70 HOH HOH . I 6 HOH B 2 102 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . C 3 20.457 -27.601 1.461 1 42.88 ? O22 P33 201 A 1 HETATM 2 C C21 P33 . . . C 3 19.327 -28.235 0.893 1 41.95 ? C21 P33 201 A 1 HETATM 3 C C20 P33 . . . C 3 18.901 -29.261 1.982 1 45.24 ? C20 P33 201 A 1 HETATM 4 O O19 P33 . . . C 3 17.482 -29.2 2.122 1 40.71 ? O19 P33 201 A 1 HETATM 5 C C18 P33 . . . C 3 17.037 -27.986 2.626 1 35.49 ? C18 P33 201 A 1 HETATM 6 C C17 P33 . . . C 3 15.823 -28.28 3.537 1 30.02 ? C17 P33 201 A 1 HETATM 7 O O16 P33 . . . C 3 16.358 -28.823 4.716 1 25.97 ? O16 P33 201 A 1 HETATM 8 C C15 P33 . . . C 3 15.92 -28.136 5.873 1 24.67 ? C15 P33 201 A 1 HETATM 9 C C14 P33 . . . C 3 16.316 -29.04 7.057 1 26.69 ? C14 P33 201 A 1 HETATM 10 O O13 P33 . . . C 3 17.72 -29.13 7.021 1 25.86 ? O13 P33 201 A 1 HETATM 11 C C12 P33 . . . C 3 18.157 -30.412 7.376 1 29.46 ? C12 P33 201 A 1 HETATM 12 C C11 P33 . . . C 3 19.289 -30.313 8.368 1 26.75 ? C11 P33 201 A 1 HETATM 13 O O10 P33 . . . C 3 20.474 -30.067 7.653 1 32.93 ? O10 P33 201 A 1 HETATM 14 C C9 P33 . . . C 3 20.638 -28.723 7.511 1 16.23 ? C9 P33 201 A 1 HETATM 15 C C8 P33 . . . C 3 22.11 -28.208 7.264 1 23.62 ? C8 P33 201 A 1 HETATM 16 O O7 P33 . . . C 3 22.083 -27.005 8.071 1 23.61 ? O7 P33 201 A 1 HETATM 17 C C6 P33 . . . C 3 23.01 -25.989 7.843 1 24.43 ? C6 P33 201 A 1 HETATM 18 C C5 P33 . . . C 3 22.932 -25.173 9.129 1 25.76 ? C5 P33 201 A 1 HETATM 19 O O4 P33 . . . C 3 22.035 -24.199 8.778 1 31.71 ? O4 P33 201 A 1 HETATM 20 C C3 P33 . . . C 3 20.886 -24.156 9.475 1 20.81 ? C3 P33 201 A 1 HETATM 21 C C2 P33 . . . C 3 21.266 -23.75 10.925 1 26.85 ? C2 P33 201 A 1 HETATM 22 O O1 P33 . . . C 3 20.202 -22.995 11.387 1 29.09 ? O1 P33 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #