data_8VJG # _model_server_result.job_id fpY3zpqR7VpjuMj-HHtPsw _model_server_result.datetime_utc '2025-02-17 06:04:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8VJG # _exptl.entry_id 8VJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VJG _cell.length_a 68.827 _cell.length_b 68.827 _cell.length_c 79.251 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 116 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 113 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id A1ACH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1ACH _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.757 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 163 n n S1 HS1 DTT sing 164 n n C1 C2 DTT sing 165 n n C1 H11 DTT sing 166 n n C1 H12 DTT sing 167 n n C2 O2 DTT sing 168 n n C2 C3 DTT sing 169 n n C2 H2 DTT sing 170 n n O2 HO2 DTT sing 171 n n C3 O3 DTT sing 172 n n C3 C4 DTT sing 173 n n C3 H3 DTT sing 174 n n O3 HO3 DTT sing 175 n n C4 S4 DTT sing 176 n n C4 H41 DTT sing 177 n n C4 H42 DTT sing 178 n n S4 HS2 DTT sing 179 n n # _atom_sites.entry_id 8VJG _atom_sites.fract_transf_matrix[1][1] 0.014529 _atom_sites.fract_transf_matrix[1][2] 0.008388 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1ACH A 1 201 201 A1ACH INH . C 3 P33 A 1 202 204 P33 PEG . D 4 DTT A 1 203 205 DTT DTT . E 5 SO4 A 1 204 2 SO4 SO4 . F 5 SO4 A 1 205 4 SO4 SO4 . G 5 SO4 A 1 206 5 SO4 SO4 . H 5 SO4 A 1 207 7 SO4 SO4 . I 5 SO4 A 1 208 1 SO4 SO4 . J 6 HOH A 1 301 125 HOH HOH . J 6 HOH A 2 302 207 HOH HOH . J 6 HOH A 3 303 89 HOH HOH . J 6 HOH A 4 304 156 HOH HOH . J 6 HOH A 5 305 56 HOH HOH . J 6 HOH A 6 306 180 HOH HOH . J 6 HOH A 7 307 21 HOH HOH . J 6 HOH A 8 308 170 HOH HOH . J 6 HOH A 9 309 17 HOH HOH . J 6 HOH A 10 310 48 HOH HOH . J 6 HOH A 11 311 85 HOH HOH . J 6 HOH A 12 312 192 HOH HOH . J 6 HOH A 13 313 121 HOH HOH . J 6 HOH A 14 314 205 HOH HOH . J 6 HOH A 15 315 109 HOH HOH . J 6 HOH A 16 316 11 HOH HOH . J 6 HOH A 17 317 77 HOH HOH . J 6 HOH A 18 318 23 HOH HOH . J 6 HOH A 19 319 13 HOH HOH . J 6 HOH A 20 320 55 HOH HOH . J 6 HOH A 21 321 114 HOH HOH . J 6 HOH A 22 322 71 HOH HOH . J 6 HOH A 23 323 70 HOH HOH . J 6 HOH A 24 324 99 HOH HOH . J 6 HOH A 25 325 62 HOH HOH . J 6 HOH A 26 326 86 HOH HOH . J 6 HOH A 27 327 37 HOH HOH . J 6 HOH A 28 328 176 HOH HOH . J 6 HOH A 29 329 115 HOH HOH . J 6 HOH A 30 330 168 HOH HOH . J 6 HOH A 31 331 177 HOH HOH . J 6 HOH A 32 332 47 HOH HOH . J 6 HOH A 33 333 90 HOH HOH . J 6 HOH A 34 334 172 HOH HOH . J 6 HOH A 35 335 79 HOH HOH . J 6 HOH A 36 336 94 HOH HOH . J 6 HOH A 37 337 20 HOH HOH . J 6 HOH A 38 338 175 HOH HOH . J 6 HOH A 39 339 193 HOH HOH . J 6 HOH A 40 340 107 HOH HOH . J 6 HOH A 41 341 98 HOH HOH . J 6 HOH A 42 342 151 HOH HOH . J 6 HOH A 43 343 110 HOH HOH . J 6 HOH A 44 344 91 HOH HOH . J 6 HOH A 45 345 160 HOH HOH . J 6 HOH A 46 346 95 HOH HOH . J 6 HOH A 47 347 139 HOH HOH . J 6 HOH A 48 348 212 HOH HOH . J 6 HOH A 49 349 60 HOH HOH . J 6 HOH A 50 350 33 HOH HOH . J 6 HOH A 51 351 10 HOH HOH . J 6 HOH A 52 352 2 HOH HOH . J 6 HOH A 53 353 204 HOH HOH . J 6 HOH A 54 354 46 HOH HOH . J 6 HOH A 55 355 66 HOH HOH . J 6 HOH A 56 356 34 HOH HOH . J 6 HOH A 57 357 18 HOH HOH . J 6 HOH A 58 358 14 HOH HOH . J 6 HOH A 59 359 195 HOH HOH . J 6 HOH A 60 360 12 HOH HOH . J 6 HOH A 61 361 61 HOH HOH . J 6 HOH A 62 362 28 HOH HOH . J 6 HOH A 63 363 167 HOH HOH . J 6 HOH A 64 364 103 HOH HOH . J 6 HOH A 65 365 36 HOH HOH . J 6 HOH A 66 366 74 HOH HOH . J 6 HOH A 67 367 102 HOH HOH . J 6 HOH A 68 368 25 HOH HOH . J 6 HOH A 69 369 58 HOH HOH . J 6 HOH A 70 370 53 HOH HOH . J 6 HOH A 71 371 65 HOH HOH . J 6 HOH A 72 372 15 HOH HOH . J 6 HOH A 73 373 96 HOH HOH . J 6 HOH A 74 374 141 HOH HOH . J 6 HOH A 75 375 101 HOH HOH . J 6 HOH A 76 376 4 HOH HOH . J 6 HOH A 77 377 171 HOH HOH . J 6 HOH A 78 378 68 HOH HOH . J 6 HOH A 79 379 7 HOH HOH . J 6 HOH A 80 380 202 HOH HOH . J 6 HOH A 81 381 161 HOH HOH . J 6 HOH A 82 382 209 HOH HOH . J 6 HOH A 83 383 51 HOH HOH . J 6 HOH A 84 384 32 HOH HOH . J 6 HOH A 85 385 16 HOH HOH . J 6 HOH A 86 386 6 HOH HOH . J 6 HOH A 87 387 134 HOH HOH . J 6 HOH A 88 388 73 HOH HOH . J 6 HOH A 89 389 188 HOH HOH . J 6 HOH A 90 390 164 HOH HOH . J 6 HOH A 91 391 57 HOH HOH . J 6 HOH A 92 392 88 HOH HOH . J 6 HOH A 93 393 145 HOH HOH . J 6 HOH A 94 394 165 HOH HOH . J 6 HOH A 95 395 174 HOH HOH . J 6 HOH A 96 396 105 HOH HOH . J 6 HOH A 97 397 155 HOH HOH . J 6 HOH A 98 398 149 HOH HOH . J 6 HOH A 99 399 213 HOH HOH . J 6 HOH A 100 400 116 HOH HOH . J 6 HOH A 101 401 194 HOH HOH . J 6 HOH A 102 402 100 HOH HOH . J 6 HOH A 103 403 182 HOH HOH . J 6 HOH A 104 404 138 HOH HOH . J 6 HOH A 105 405 210 HOH HOH . J 6 HOH A 106 406 67 HOH HOH . J 6 HOH A 107 407 197 HOH HOH . J 6 HOH A 108 408 152 HOH HOH . J 6 HOH A 109 409 52 HOH HOH . J 6 HOH A 110 410 148 HOH HOH . J 6 HOH A 111 411 35 HOH HOH . J 6 HOH A 112 412 76 HOH HOH . J 6 HOH A 113 413 154 HOH HOH . J 6 HOH A 114 414 111 HOH HOH . J 6 HOH A 115 415 124 HOH HOH . J 6 HOH A 116 416 130 HOH HOH . J 6 HOH A 117 417 49 HOH HOH . J 6 HOH A 118 418 9 HOH HOH . J 6 HOH A 119 419 104 HOH HOH . J 6 HOH A 120 420 22 HOH HOH . J 6 HOH A 121 421 206 HOH HOH . J 6 HOH A 122 422 8 HOH HOH . J 6 HOH A 123 423 179 HOH HOH . J 6 HOH A 124 424 169 HOH HOH . J 6 HOH A 125 425 78 HOH HOH . J 6 HOH A 126 426 196 HOH HOH . J 6 HOH A 127 427 153 HOH HOH . J 6 HOH A 128 428 123 HOH HOH . J 6 HOH A 129 429 203 HOH HOH . J 6 HOH A 130 430 183 HOH HOH . J 6 HOH A 131 431 211 HOH HOH . J 6 HOH A 132 432 44 HOH HOH . J 6 HOH A 133 433 162 HOH HOH . J 6 HOH A 134 434 146 HOH HOH . J 6 HOH A 135 435 137 HOH HOH . J 6 HOH A 136 436 108 HOH HOH . J 6 HOH A 137 437 59 HOH HOH . J 6 HOH A 138 438 64 HOH HOH . J 6 HOH A 139 439 75 HOH HOH . J 6 HOH A 140 440 122 HOH HOH . J 6 HOH A 141 441 190 HOH HOH . J 6 HOH A 142 442 5 HOH HOH . J 6 HOH A 143 443 45 HOH HOH . J 6 HOH A 144 444 112 HOH HOH . J 6 HOH A 145 445 199 HOH HOH . J 6 HOH A 146 446 143 HOH HOH . J 6 HOH A 147 447 178 HOH HOH . J 6 HOH A 148 448 136 HOH HOH . J 6 HOH A 149 449 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 4 38.294 -37.147 12.367 1 68.6 ? S1 DTT 203 A 1 HETATM 2 C C1 DTT . . . D 4 39.311 -36.741 10.923 1 53.98 ? C1 DTT 203 A 1 HETATM 3 C C2 DTT . . . D 4 40.405 -35.715 11.199 1 46.55 ? C2 DTT 203 A 1 HETATM 4 O O2 DTT . . . D 4 40.581 -34.941 10.038 1 38.78 ? O2 DTT 203 A 1 HETATM 5 C C3 DTT . . . D 4 41.729 -36.39 11.532 1 55.3 ? C3 DTT 203 A 1 HETATM 6 O O3 DTT . . . D 4 41.483 -37.636 12.148 1 61.49 ? O3 DTT 203 A 1 HETATM 7 C C4 DTT . . . D 4 42.565 -36.603 10.273 1 56.35 ? C4 DTT 203 A 1 HETATM 8 S S4 DTT . . . D 4 44.004 -35.505 10.185 1 58.46 ? S4 DTT 203 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #