data_8VJL # _model_server_result.job_id y1fix4AeeRsSkzhYv4FWKw _model_server_result.datetime_utc '2024-12-26 16:56:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 8VJL # _exptl.entry_id 8VJL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1005.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Lauryl Maltose Neopentyl Glycol' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VJL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 L N N ? 3 N N N # _chem_comp.formula 'C47 H88 O22' _chem_comp.formula_weight 1005.188 _chem_comp.id LMN _chem_comp.mon_nstd_flag . _chem_comp.name 'Lauryl Maltose Neopentyl Glycol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,2-didecylpropane-1,3-bis-b-D-maltopyranoside # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C1 LMN sing 192 n n C2 C1 LMN sing 193 n n C1 O1 LMN sing 194 n n C1 H1 LMN sing 195 n n CBS O1 LMN sing 196 n n H2 C2 LMN sing 197 n n C2 C3 LMN sing 198 n n C2 O2 LMN sing 199 n n HO2 O2 LMN sing 200 n n O3 C3 LMN sing 201 n n C4 C3 LMN sing 202 n n C3 H3 LMN sing 203 n n HO3 O3 LMN sing 204 n n C5 C4 LMN sing 205 n n H4 C4 LMN sing 206 n n C4 O4 LMN sing 207 n n O4 CCR LMN sing 208 n n C6 C5 LMN sing 209 n n C5 H5 LMN sing 210 n n C5 O5 LMN sing 211 n n O6 C6 LMN sing 212 n n H6A C6 LMN sing 213 n n H6 C6 LMN sing 214 n n HO6 O6 LMN sing 215 n n HAAB CAA LMN sing 216 n n CAW CAA LMN sing 217 n n CAA HAA LMN sing 218 n n CAA HAAA LMN sing 219 n n HABB CAB LMN sing 220 n n CAB HABA LMN sing 221 n n CAB CAX LMN sing 222 n n CAB HAB LMN sing 223 n n CBM OAI LMN sing 224 n n HOAI OAI LMN sing 225 n n HOAJ OAJ LMN sing 226 n n CBN OAJ LMN sing 227 n n HOAL OAL LMN sing 228 n n OAL CBP LMN sing 229 n n CCH OAN LMN sing 230 n n OAN HOAN LMN sing 231 n n CCL OAP LMN sing 232 n n HOAP OAP LMN sing 233 n n CCN OAQ LMN sing 234 n n OAQ HOAQ LMN sing 235 n n CCO OAR LMN sing 236 n n HOAR OAR LMN sing 237 n n HOAS OAS LMN sing 238 n n CCT OAS LMN sing 239 n n HOAT OAT LMN sing 240 n n OAT CCU LMN sing 241 n n HOAU OAU LMN sing 242 n n OAU CCV LMN sing 243 n n CCW OAV LMN sing 244 n n OAV HOAV LMN sing 245 n n CAY CAW LMN sing 246 n n CAW HAW LMN sing 247 n n CAW HAWA LMN sing 248 n n CAZ CAX LMN sing 249 n n HAXA CAX LMN sing 250 n n CAX HAX LMN sing 251 n n HAYA CAY LMN sing 252 n n CBA CAY LMN sing 253 n n CAY HAY LMN sing 254 n n HAZA CAZ LMN sing 255 n n CAZ CBB LMN sing 256 n n CAZ HAZ LMN sing 257 n n HBA CBA LMN sing 258 n n HBAA CBA LMN sing 259 n n CBA CBC LMN sing 260 n n CBD CBB LMN sing 261 n n CBB HBB LMN sing 262 n n CBB HBBA LMN sing 263 n n CBE CBC LMN sing 264 n n CBC HBCA LMN sing 265 n n CBC HBC LMN sing 266 n n HBD CBD LMN sing 267 n n CBF CBD LMN sing 268 n n CBD HBDA LMN sing 269 n n HBE CBE LMN sing 270 n n CBE HBEA LMN sing 271 n n CBE CBG LMN sing 272 n n HBFA CBF LMN sing 273 n n CBH CBF LMN sing 274 n n CBF HBF LMN sing 275 n n CBI CBG LMN sing 276 n n HBGA CBG LMN sing 277 n n CBG HBG LMN sing 278 n n HBHA CBH LMN sing 279 n n HBH CBH LMN sing 280 n n CBH CBJ LMN sing 281 n n CBK CBI LMN sing 282 n n HBI CBI LMN sing 283 n n CBI HBIA LMN sing 284 n n CBL CBJ LMN sing 285 n n CBJ HBJ LMN sing 286 n n CBJ HBJA LMN sing 287 n n HBKA CBK LMN sing 288 n n CBQ CBK LMN sing 289 n n CBK HBK LMN sing 290 n n HBL CBL LMN sing 291 n n HBLA CBL LMN sing 292 n n CBL CBR LMN sing 293 n n CCC CBM LMN sing 294 n n HBM CBM LMN sing 295 n n CBM HBMA LMN sing 296 n n HBNA CBN LMN sing 297 n n CCD CBN LMN sing 298 n n CBN HBN LMN sing 299 n n CCF CBP LMN sing 300 n n CBP HBPA LMN sing 301 n n CBP HBP LMN sing 302 n n CCM CBQ LMN sing 303 n n HBQ CBQ LMN sing 304 n n CBQ HBQA LMN sing 305 n n HBRA CBR LMN sing 306 n n CBR HBR LMN sing 307 n n CBR CCM LMN sing 308 n n HBS CBS LMN sing 309 n n HBSA CBS LMN sing 310 n n CBS CCM LMN sing 311 n n OBV CBT LMN sing 312 n n CCM CBT LMN sing 313 n n CBT HBT LMN sing 314 n n CBT HBTA LMN sing 315 n n CCJ OBV LMN sing 316 n n CCJ OBX LMN sing 317 n n CCF OBX LMN sing 318 n n CCR OBY LMN sing 319 n n OBY CCC LMN sing 320 n n CCS OBZ LMN sing 321 n n OBZ CCD LMN sing 322 n n CCS OCB LMN sing 323 n n OCB CCQ LMN sing 324 n n HCC CCC LMN sing 325 n n CCC CCN LMN sing 326 n n CCO CCD LMN sing 327 n n CCD HCD LMN sing 328 n n HCF CCF LMN sing 329 n n CCF CCQ LMN sing 330 n n HCH CCH LMN sing 331 n n CCH CCL LMN sing 332 n n CCH CCQ LMN sing 333 n n HCJ CCJ LMN sing 334 n n CCJ CCL LMN sing 335 n n CCL HCL LMN sing 336 n n CCT CCN LMN sing 337 n n CCN HCN LMN sing 338 n n CCU CCO LMN sing 339 n n CCO HCO LMN sing 340 n n CCQ HCQ LMN sing 341 n n CCV CCR LMN sing 342 n n CCR HCR LMN sing 343 n n HCS CCS LMN sing 344 n n CCW CCS LMN sing 345 n n CCV CCT LMN sing 346 n n CCT HCT LMN sing 347 n n CCU CCW LMN sing 348 n n CCU HCU LMN sing 349 n n CCV HCV LMN sing 350 n n CCW HCW LMN sing 351 n n # _atom_sites.entry_id 8VJL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 LMN A 1 401 301 LMN LMN . J 4 PEF A 1 402 302 PEF PEF . K 3 LMN C 1 401 301 LMN LMN . L 3 LMN E 1 401 301 LMN LMN . M 4 PEF E 1 402 302 PEF PEF . N 3 LMN G 1 401 301 LMN LMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMN . . . L 3 141.923 119.809 110.156 1 36.48 ? C1 LMN 401 E 1 HETATM 2 O O1 LMN . . . L 3 142.54 120.875 110.685 1 36.48 ? O1 LMN 401 E 1 HETATM 3 C C2 LMN . . . L 3 142.27 119.686 108.652 1 36.48 ? C2 LMN 401 E 1 HETATM 4 O O2 LMN . . . L 3 142.668 118.354 108.382 1 36.48 ? O2 LMN 401 E 1 HETATM 5 C C3 LMN . . . L 3 141.087 120.013 107.793 1 36.48 ? C3 LMN 401 E 1 HETATM 6 O O3 LMN . . . L 3 140.603 121.343 108.172 1 36.48 ? O3 LMN 401 E 1 HETATM 7 C C4 LMN . . . L 3 140.009 119.066 108.007 1 36.48 ? C4 LMN 401 E 1 HETATM 8 O O4 LMN . . . L 3 140.499 117.705 107.593 1 36.48 ? O4 LMN 401 E 1 HETATM 9 C C5 LMN . . . L 3 139.618 119.019 109.437 1 36.48 ? C5 LMN 401 E 1 HETATM 10 O O5 LMN . . . L 3 140.4 119.985 110.264 1 36.48 ? O5 LMN 401 E 1 HETATM 11 C C6 LMN . . . L 3 138.153 119.366 109.554 1 36.48 ? C6 LMN 401 E 1 HETATM 12 O O6 LMN . . . L 3 137.416 118.592 108.643 1 36.48 ? O6 LMN 401 E 1 HETATM 13 C CAA LMN . . . L 3 147.579 127.505 121.009 1 36.48 ? CAA LMN 401 E 1 HETATM 14 C CAB LMN . . . L 3 142.429 120.279 123.822 1 36.48 ? CAB LMN 401 E 1 HETATM 15 O OAI LMN . . . L 3 137.19 115.361 103.921 1 36.48 ? OAI LMN 401 E 1 HETATM 16 O OAJ LMN . . . L 3 141.036 130.842 104.879 1 36.48 ? OAJ LMN 401 E 1 HETATM 17 O OAL LMN . . . L 3 141.841 124.062 106.58 1 36.48 ? OAL LMN 401 E 1 HETATM 18 O OAN LMN . . . L 3 144.484 128.454 109.449 1 36.48 ? OAN LMN 401 E 1 HETATM 19 O OAP LMN . . . L 3 142.235 126.755 109.813 1 36.48 ? OAP LMN 401 E 1 HETATM 20 O OAQ LMN . . . L 3 139.346 113.226 105.472 1 36.48 ? OAQ LMN 401 E 1 HETATM 21 O OAR LMN . . . L 3 143.19 132.729 105.132 1 36.48 ? OAR LMN 401 E 1 HETATM 22 O OAS LMN . . . L 3 141.64 114.667 104.543 1 36.48 ? OAS LMN 401 E 1 HETATM 23 O OAT LMN . . . L 3 144.492 132.096 107.694 1 36.48 ? OAT LMN 401 E 1 HETATM 24 O OAU LMN . . . L 3 142.063 117.091 105.84 1 36.48 ? OAU LMN 401 E 1 HETATM 25 O OAV LMN . . . L 3 146.365 129.783 105.948 1 36.48 ? OAV LMN 401 E 1 HETATM 26 C CAW LMN . . . L 3 146.734 126.244 120.674 1 36.48 ? CAW LMN 401 E 1 HETATM 27 C CAX LMN . . . L 3 142.138 120.156 122.316 1 36.48 ? CAX LMN 401 E 1 HETATM 28 C CAY LMN . . . L 3 147.451 125.408 119.568 1 36.48 ? CAY LMN 401 E 1 HETATM 29 C CAZ LMN . . . L 3 143.008 121.199 121.543 1 36.48 ? CAZ LMN 401 E 1 HETATM 30 C CBA LMN . . . L 3 146.388 124.65 118.731 1 36.48 ? CBA LMN 401 E 1 HETATM 31 C CBB LMN . . . L 3 142.559 121.26 120.05 1 36.48 ? CBB LMN 401 E 1 HETATM 32 C CBC LMN . . . L 3 146.831 124.607 117.249 1 36.48 ? CBC LMN 401 E 1 HETATM 33 C CBD LMN . . . L 3 143.12 122.575 119.404 1 36.48 ? CBD LMN 401 E 1 HETATM 34 C CBE LMN . . . L 3 145.733 125.257 116.36 1 36.48 ? CBE LMN 401 E 1 HETATM 35 C CBF LMN . . . L 3 142.314 122.905 118.118 1 36.48 ? CBF LMN 401 E 1 HETATM 36 C CBG LMN . . . L 3 146.051 124.984 114.842 1 36.48 ? CBG LMN 401 E 1 HETATM 37 C CBH LMN . . . L 3 142.136 121.619 117.254 1 36.48 ? CBH LMN 401 E 1 HETATM 38 C CBI LMN . . . L 3 145.343 123.615 114.404 1 36.48 ? CBI LMN 401 E 1 HETATM 39 C CBJ LMN . . . L 3 141.238 121.96 116.036 1 36.48 ? CBJ LMN 401 E 1 HETATM 40 C CBK LMN . . . L 3 144.791 123.751 112.929 1 36.48 ? CBK LMN 401 E 1 HETATM 41 C CBL LMN . . . L 3 142.062 121.781 114.68 1 36.48 ? CBL LMN 401 E 1 HETATM 42 C CBM LMN . . . L 3 137.268 116.011 105.158 1 36.48 ? CBM LMN 401 E 1 HETATM 43 C CBN LMN . . . L 3 141.977 130.375 103.931 1 36.48 ? CBN LMN 401 E 1 HETATM 44 C CBP LMN . . . L 3 142.099 125.416 106.837 1 36.48 ? CBP LMN 401 E 1 HETATM 45 C CBQ LMN . . . L 3 143.964 122.447 112.533 1 36.48 ? CBQ LMN 401 E 1 HETATM 46 C CBR LMN . . . L 3 141.748 123.007 113.767 1 36.48 ? CBR LMN 401 E 1 HETATM 47 C CBS LMN . . . L 3 141.637 121.725 111.483 1 36.48 ? CBS LMN 401 E 1 HETATM 48 C CBT LMN . . . L 3 142.374 124.28 111.58 1 36.48 ? CBT LMN 401 E 1 HETATM 49 O OBV LMN . . . L 3 142.565 124.142 110.135 1 36.48 ? OBV LMN 401 E 1 HETATM 50 O OBX LMN . . . L 3 143.913 124.525 108.215 1 36.48 ? OBX LMN 401 E 1 HETATM 51 O OBY LMN . . . L 3 138.787 116.24 107.058 1 36.48 ? OBY LMN 401 E 1 HETATM 52 O OBZ LMN . . . L 3 143.729 129.021 104.951 1 36.48 ? OBZ LMN 401 E 1 HETATM 53 O OCB LMN . . . L 3 144.664 127.703 106.662 1 36.48 ? OCB LMN 401 E 1 HETATM 54 C CCC LMN . . . L 3 138.255 115.29 106.056 1 36.48 ? CCC LMN 401 E 1 HETATM 55 C CCD LMN . . . L 3 143.365 130.399 104.53 1 36.48 ? CCD LMN 401 E 1 HETATM 56 C CCF LMN . . . L 3 143.549 125.584 107.209 1 36.48 ? CCF LMN 401 E 1 HETATM 57 C CCH LMN . . . L 3 144.424 127.082 108.985 1 36.48 ? CCH LMN 401 E 1 HETATM 58 C CCJ LMN . . . L 3 143.702 124.829 109.646 1 36.48 ? CCJ LMN 401 E 1 HETATM 59 C CCL LMN . . . L 3 143.594 126.307 109.953 1 36.48 ? CCL LMN 401 E 1 HETATM 60 C CCM LMN . . . L 3 142.453 122.849 112.336 1 36.48 ? CCM LMN 401 E 1 HETATM 61 C CCN LMN . . . L 3 139.346 114.64 105.215 1 36.48 ? CCN LMN 401 E 1 HETATM 62 C CCO LMN . . . L 3 143.39 131.413 105.674 1 36.48 ? CCO LMN 401 E 1 HETATM 63 C CCQ LMN . . . L 3 143.798 127.018 107.658 1 36.48 ? CCQ LMN 401 E 1 HETATM 64 C CCR LMN . . . L 3 139.76 117.234 106.532 1 36.48 ? CCR LMN 401 E 1 HETATM 65 C CCS LMN . . . L 3 144.144 128.942 106.379 1 36.48 ? CCS LMN 401 E 1 HETATM 66 C CCT LMN . . . L 3 140.698 115.169 105.532 1 36.48 ? CCT LMN 401 E 1 HETATM 67 C CCU LMN . . . L 3 144.678 131.393 106.429 1 36.48 ? CCU LMN 401 E 1 HETATM 68 C CCV LMN . . . L 3 140.727 116.647 105.517 1 36.48 ? CCV LMN 401 E 1 HETATM 69 C CCW LMN . . . L 3 145.17 130.018 106.72 1 36.48 ? CCW LMN 401 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 69 #