data_8VJM
#
_model_server_result.job_id            EQyA4ENeFzFDcrvcTXhTIA 
_model_server_result.datetime_utc      '2024-12-27 06:05:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vjm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    8VJM 
#
_exptl.entry_id    8VJM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              691.959 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VJM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VJM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C37 H74 N O8 P' 
_chem_comp.formula_weight    691.959 
_chem_comp.id                PEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 PEF sing 395 n n 
C2 C3 PEF sing 396 n n 
C2 O2 PEF sing 397 n n 
C2 H21 PEF sing 398 n n 
C1 O3P PEF sing 399 n n 
C1 H11 PEF sing 400 n n 
C1 H12 PEF sing 401 n n 
N C5 PEF sing 402 n n 
N HN1 PEF sing 403 n n 
N HN2 PEF sing 404 n n 
C3 O3 PEF sing 405 n n 
C3 H31 PEF sing 406 n n 
C3 H32 PEF sing 407 n n 
C4 C5 PEF sing 408 n n 
C4 O4P PEF sing 409 n n 
C4 H41 PEF sing 410 n n 
C4 H42 PEF sing 411 n n 
C5 H51 PEF sing 412 n n 
C5 H52 PEF sing 413 n n 
C10 C11 PEF sing 414 n n 
C10 O4 PEF doub 415 n n 
C10 O2 PEF sing 416 n n 
C11 C12 PEF sing 417 n n 
C11 H112 PEF sing 418 n n 
C11 H111 PEF sing 419 n n 
C12 C13 PEF sing 420 n n 
C12 H122 PEF sing 421 n n 
C12 H121 PEF sing 422 n n 
C13 C14 PEF sing 423 n n 
C13 H132 PEF sing 424 n n 
C13 H131 PEF sing 425 n n 
C14 C15 PEF sing 426 n n 
C14 H142 PEF sing 427 n n 
C14 H141 PEF sing 428 n n 
C15 C16 PEF sing 429 n n 
C15 H152 PEF sing 430 n n 
C15 H151 PEF sing 431 n n 
C16 C17 PEF sing 432 n n 
C16 H162 PEF sing 433 n n 
C16 H161 PEF sing 434 n n 
C17 C18 PEF sing 435 n n 
C17 H172 PEF sing 436 n n 
C17 H171 PEF sing 437 n n 
C18 C19 PEF sing 438 n n 
C18 H182 PEF sing 439 n n 
C18 H181 PEF sing 440 n n 
C19 C20 PEF sing 441 n n 
C19 H192 PEF sing 442 n n 
C19 H191 PEF sing 443 n n 
C20 C21 PEF sing 444 n n 
C20 H202 PEF sing 445 n n 
C20 H201 PEF sing 446 n n 
C21 C22 PEF sing 447 n n 
C21 H212 PEF sing 448 n n 
C21 H211 PEF sing 449 n n 
C22 C23 PEF sing 450 n n 
C22 H222 PEF sing 451 n n 
C22 H221 PEF sing 452 n n 
C23 C24 PEF sing 453 n n 
C23 H232 PEF sing 454 n n 
C23 H231 PEF sing 455 n n 
C24 C25 PEF sing 456 n n 
C24 H242 PEF sing 457 n n 
C24 H241 PEF sing 458 n n 
C25 H252 PEF sing 459 n n 
C25 H251 PEF sing 460 n n 
C25 H253 PEF sing 461 n n 
C30 C31 PEF sing 462 n n 
C30 O5 PEF doub 463 n n 
C30 O3 PEF sing 464 n n 
C31 C32 PEF sing 465 n n 
C31 H312 PEF sing 466 n n 
C31 H311 PEF sing 467 n n 
C32 C33 PEF sing 468 n n 
C32 H322 PEF sing 469 n n 
C32 H321 PEF sing 470 n n 
C33 C34 PEF sing 471 n n 
C33 H332 PEF sing 472 n n 
C33 H331 PEF sing 473 n n 
C34 C35 PEF sing 474 n n 
C34 H342 PEF sing 475 n n 
C34 H341 PEF sing 476 n n 
C35 C36 PEF sing 477 n n 
C35 H352 PEF sing 478 n n 
C35 H351 PEF sing 479 n n 
C36 C37 PEF sing 480 n n 
C36 H362 PEF sing 481 n n 
C36 H361 PEF sing 482 n n 
C37 C38 PEF sing 483 n n 
C37 H372 PEF sing 484 n n 
C37 H371 PEF sing 485 n n 
C38 C39 PEF sing 486 n n 
C38 H382 PEF sing 487 n n 
C38 H381 PEF sing 488 n n 
C39 C40 PEF sing 489 n n 
C39 H392 PEF sing 490 n n 
C39 H391 PEF sing 491 n n 
C40 C41 PEF sing 492 n n 
C40 H402 PEF sing 493 n n 
C40 H401 PEF sing 494 n n 
C41 C42 PEF sing 495 n n 
C41 H412 PEF sing 496 n n 
C41 H411 PEF sing 497 n n 
C42 C43 PEF sing 498 n n 
C42 H422 PEF sing 499 n n 
C42 H421 PEF sing 500 n n 
C43 C44 PEF sing 501 n n 
C43 H432 PEF sing 502 n n 
C43 H431 PEF sing 503 n n 
C44 C45 PEF sing 504 n n 
C44 H442 PEF sing 505 n n 
C44 H441 PEF sing 506 n n 
C45 H452 PEF sing 507 n n 
C45 H451 PEF sing 508 n n 
C45 H453 PEF sing 509 n n 
O1P P PEF doub 510 n n 
O2P P PEF sing 511 n n 
O2P HOP2 PEF sing 512 n n 
O3P P PEF sing 513 n n 
O4P P PEF sing 514 n n 
#
_atom_sites.entry_id                     8VJM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LMN A 1 401 301 LMN LMN . 
F 4 PEF A 1 402 302 PEF PEF . 
G 3 LMN A 1 403 301 LMN LMN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PEF . . . F 4 151.058 145.817 136.523 1 64.05 ? C2 PEF 402 A 1 
HETATM 2 C C1 PEF . . . F 4 152.191 145.328 137.419 1 64.05 ? C1 PEF 402 A 1 
HETATM 3 N N PEF . . . F 4 158.054 147.462 141.42 1 64.05 ? N PEF 402 A 1 
HETATM 4 C C3 PEF . . . F 4 150.62 144.689 135.592 1 64.05 ? C3 PEF 402 A 1 
HETATM 5 C C4 PEF . . . F 4 156.504 147.027 139.591 1 64.05 ? C4 PEF 402 A 1 
HETATM 6 C C5 PEF . . . F 4 156.655 147.502 141.036 1 64.05 ? C5 PEF 402 A 1 
HETATM 7 C C10 PEF . . . F 4 149.428 147.448 136.922 1 64.05 ? C10 PEF 402 A 1 
HETATM 8 C C11 PEF . . . F 4 147.947 147.734 137.156 1 64.05 ? C11 PEF 402 A 1 
HETATM 9 C C12 PEF . . . F 4 147.721 149.242 137.254 1 64.05 ? C12 PEF 402 A 1 
HETATM 10 C C13 PEF . . . F 4 147.318 149.78 135.882 1 64.05 ? C13 PEF 402 A 1 
HETATM 11 C C14 PEF . . . F 4 145.999 149.14 135.449 1 64.05 ? C14 PEF 402 A 1 
HETATM 12 C C15 PEF . . . F 4 144.949 150.228 135.233 1 64.05 ? C15 PEF 402 A 1 
HETATM 13 C C16 PEF . . . F 4 144.501 150.79 136.581 1 64.05 ? C16 PEF 402 A 1 
HETATM 14 C C17 PEF . . . F 4 143.147 151.476 136.415 1 64.05 ? C17 PEF 402 A 1 
HETATM 15 C C18 PEF . . . F 4 142.755 152.169 137.719 1 64.05 ? C18 PEF 402 A 1 
HETATM 16 C C19 PEF . . . F 4 141.242 152.376 137.746 1 64.05 ? C19 PEF 402 A 1 
HETATM 17 C C20 PEF . . . F 4 140.546 151.019 137.657 1 64.05 ? C20 PEF 402 A 1 
HETATM 18 C C21 PEF . . . F 4 139.491 151.055 136.552 1 64.05 ? C21 PEF 402 A 1 
HETATM 19 C C22 PEF . . . F 4 139.098 149.628 136.17 1 64.05 ? C22 PEF 402 A 1 
HETATM 20 C C23 PEF . . . F 4 140.356 148.798 135.919 1 64.05 ? C23 PEF 402 A 1 
HETATM 21 C C24 PEF . . . F 4 139.965 147.371 135.541 1 64.05 ? C24 PEF 402 A 1 
HETATM 22 C C25 PEF . . . F 4 141.183 146.459 135.678 1 64.05 ? C25 PEF 402 A 1 
HETATM 23 C C30 PEF . . . F 4 149.025 144.328 133.912 1 64.05 ? C30 PEF 402 A 1 
HETATM 24 C C31 PEF . . . F 4 147.591 144.31 133.392 1 64.05 ? C31 PEF 402 A 1 
HETATM 25 C C32 PEF . . . F 4 147.553 145.011 132.036 1 64.05 ? C32 PEF 402 A 1 
HETATM 26 C C33 PEF . . . F 4 148.033 146.45 132.207 1 64.05 ? C33 PEF 402 A 1 
HETATM 27 C C34 PEF . . . F 4 148.824 146.876 130.972 1 64.05 ? C34 PEF 402 A 1 
HETATM 28 C C35 PEF . . . F 4 149.67 148.1 131.315 1 64.05 ? C35 PEF 402 A 1 
HETATM 29 C C36 PEF . . . F 4 148.761 149.304 131.549 1 64.05 ? C36 PEF 402 A 1 
HETATM 30 C C37 PEF . . . F 4 147.917 149.565 130.302 1 64.05 ? C37 PEF 402 A 1 
HETATM 31 C C38 PEF . . . F 4 146.436 149.559 130.675 1 64.05 ? C38 PEF 402 A 1 
HETATM 32 C C39 PEF . . . F 4 145.595 149.748 129.415 1 64.05 ? C39 PEF 402 A 1 
HETATM 33 C C40 PEF . . . F 4 144.518 150.798 129.677 1 64.05 ? C40 PEF 402 A 1 
HETATM 34 C C41 PEF . . . F 4 143.198 150.098 129.991 1 64.05 ? C41 PEF 402 A 1 
HETATM 35 C C42 PEF . . . F 4 142.32 151.018 130.835 1 64.05 ? C42 PEF 402 A 1 
HETATM 36 C C43 PEF . . . F 4 142.208 150.46 132.251 1 64.05 ? C43 PEF 402 A 1 
HETATM 37 C C44 PEF . . . F 4 141.472 149.122 132.211 1 64.05 ? C44 PEF 402 A 1 
HETATM 38 C C45 PEF . . . F 4 139.974 149.367 132.046 1 64.05 ? C45 PEF 402 A 1 
HETATM 39 O O4 PEF . . . F 4 150.116 148.264 136.409 1 64.05 ? O4 PEF 402 A 1 
HETATM 40 O O5 PEF . . . F 4 149.887 143.83 133.272 1 64.05 ? O5 PEF 402 A 1 
HETATM 41 O O2 PEF . . . F 4 149.972 146.218 137.308 1 64.05 ? O2 PEF 402 A 1 
HETATM 42 O O3 PEF . . . F 4 149.32 144.935 135.137 1 64.05 ? O3 PEF 402 A 1 
HETATM 43 O O1P PEF . . . F 4 154.76 144.654 138.486 1 64.05 ? O1P PEF 402 A 1 
HETATM 44 O O2P PEF . . . F 4 155.432 146.295 136.775 1 64.05 ? O2P PEF 402 A 1 
HETATM 45 O O3P PEF . . . F 4 153.035 146.402 137.714 1 64.05 ? O3P PEF 402 A 1 
HETATM 46 O O4P PEF . . . F 4 155.159 147.099 139.212 1 64.05 ? O4P PEF 402 A 1 
HETATM 47 P P PEF . . . F 4 154.62 146.085 138.029 1 64.05 ? P PEF 402 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           47 
#