data_8VJP # _model_server_result.job_id QyWzq8zwTUEw0BYKXFPWmQ _model_server_result.datetime_utc '2024-11-24 12:20:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 8VJP # _exptl.entry_id 8VJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.212 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4Z)-oct-4-en-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VJP _cell.length_a 31.039 _cell.length_b 62.811 _cell.length_c 81.224 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 85 A HIS 252 1_555 C SDQ A1AJE . A A1AJE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale2 C NDO A1AJE . A A1AJE 401 1_555 B CB ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale3 B C ACY 1 B ACY 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 B CA ALA 9 B ALA 9 1_555 D CEK A1AJD . B A1AJD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? covale ? covale5 B CA ALA 13 B ALA 13 1_555 D CER A1AJD . B A1AJD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.553 ? covale ? covale6 B C PHE 14 B PHE 14 1_555 B N NH2 15 B NH2 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C8 H16 O' _chem_comp.formula_weight 128.212 _chem_comp.id A1AJD _chem_comp.mon_nstd_flag . _chem_comp.name (4Z)-oct-4-en-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CEK CEL A1AJD sing 1 n n CEL CEM A1AJD sing 2 n n CEN CEM A1AJD sing 3 n n CEN CEO A1AJD doub 4 z n CEO CEP A1AJD sing 5 n n CEP CEQ A1AJD sing 6 n n CEQ CER A1AJD sing 7 n n CEK O1 A1AJD sing 8 n n CEK H1 A1AJD sing 9 n n CEK H2 A1AJD sing 10 n n CEL H3 A1AJD sing 11 n n CEL H4 A1AJD sing 12 n n CEM H5 A1AJD sing 13 n n CEM H6 A1AJD sing 14 n n CEN H7 A1AJD sing 15 n n CEO H8 A1AJD sing 16 n n CEP H9 A1AJD sing 17 n n CEP H10 A1AJD sing 18 n n CEQ H11 A1AJD sing 19 n n CEQ H12 A1AJD sing 20 n n CER H13 A1AJD sing 21 n n CER H14 A1AJD sing 22 n n CER H15 A1AJD sing 23 n n O1 H16 A1AJD sing 24 n n # _atom_sites.entry_id 8VJP _atom_sites.fract_transf_matrix[1][1] 0.032218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1AJE A 1 401 401 A1AJE DRG . D 4 A1AJD B 1 101 401 A1AJD DRG . E 5 HOH A 1 501 210 HOH HOH . E 5 HOH A 2 502 190 HOH HOH . E 5 HOH A 3 503 184 HOH HOH . E 5 HOH A 4 504 209 HOH HOH . E 5 HOH A 5 505 151 HOH HOH . E 5 HOH A 6 506 215 HOH HOH . E 5 HOH A 7 507 120 HOH HOH . E 5 HOH A 8 508 74 HOH HOH . E 5 HOH A 9 509 175 HOH HOH . E 5 HOH A 10 510 224 HOH HOH . E 5 HOH A 11 511 99 HOH HOH . E 5 HOH A 12 512 90 HOH HOH . E 5 HOH A 13 513 127 HOH HOH . E 5 HOH A 14 514 104 HOH HOH . E 5 HOH A 15 515 67 HOH HOH . E 5 HOH A 16 516 177 HOH HOH . E 5 HOH A 17 517 96 HOH HOH . E 5 HOH A 18 518 32 HOH HOH . E 5 HOH A 19 519 157 HOH HOH . E 5 HOH A 20 520 101 HOH HOH . E 5 HOH A 21 521 135 HOH HOH . E 5 HOH A 22 522 169 HOH HOH . E 5 HOH A 23 523 53 HOH HOH . E 5 HOH A 24 524 150 HOH HOH . E 5 HOH A 25 525 111 HOH HOH . E 5 HOH A 26 526 144 HOH HOH . E 5 HOH A 27 527 178 HOH HOH . E 5 HOH A 28 528 61 HOH HOH . E 5 HOH A 29 529 181 HOH HOH . E 5 HOH A 30 530 33 HOH HOH . E 5 HOH A 31 531 30 HOH HOH . E 5 HOH A 32 532 8 HOH HOH . E 5 HOH A 33 533 62 HOH HOH . E 5 HOH A 34 534 72 HOH HOH . E 5 HOH A 35 535 84 HOH HOH . E 5 HOH A 36 536 223 HOH HOH . E 5 HOH A 37 537 14 HOH HOH . E 5 HOH A 38 538 155 HOH HOH . E 5 HOH A 39 539 10 HOH HOH . E 5 HOH A 40 540 55 HOH HOH . E 5 HOH A 41 541 110 HOH HOH . E 5 HOH A 42 542 48 HOH HOH . E 5 HOH A 43 543 138 HOH HOH . E 5 HOH A 44 544 43 HOH HOH . E 5 HOH A 45 545 11 HOH HOH . E 5 HOH A 46 546 80 HOH HOH . E 5 HOH A 47 547 76 HOH HOH . E 5 HOH A 48 548 28 HOH HOH . E 5 HOH A 49 549 19 HOH HOH . E 5 HOH A 50 550 103 HOH HOH . E 5 HOH A 51 551 17 HOH HOH . E 5 HOH A 52 552 141 HOH HOH . E 5 HOH A 53 553 133 HOH HOH . E 5 HOH A 54 554 69 HOH HOH . E 5 HOH A 55 555 79 HOH HOH . E 5 HOH A 56 556 9 HOH HOH . E 5 HOH A 57 557 81 HOH HOH . E 5 HOH A 58 558 35 HOH HOH . E 5 HOH A 59 559 44 HOH HOH . E 5 HOH A 60 560 38 HOH HOH . E 5 HOH A 61 561 77 HOH HOH . E 5 HOH A 62 562 156 HOH HOH . E 5 HOH A 63 563 86 HOH HOH . E 5 HOH A 64 564 18 HOH HOH . E 5 HOH A 65 565 60 HOH HOH . E 5 HOH A 66 566 117 HOH HOH . E 5 HOH A 67 567 1 HOH HOH . E 5 HOH A 68 568 152 HOH HOH . E 5 HOH A 69 569 168 HOH HOH . E 5 HOH A 70 570 100 HOH HOH . E 5 HOH A 71 571 47 HOH HOH . E 5 HOH A 72 572 27 HOH HOH . E 5 HOH A 73 573 78 HOH HOH . E 5 HOH A 74 574 164 HOH HOH . E 5 HOH A 75 575 13 HOH HOH . E 5 HOH A 76 576 63 HOH HOH . E 5 HOH A 77 577 71 HOH HOH . E 5 HOH A 78 578 51 HOH HOH . E 5 HOH A 79 579 221 HOH HOH . E 5 HOH A 80 580 37 HOH HOH . E 5 HOH A 81 581 24 HOH HOH . E 5 HOH A 82 582 46 HOH HOH . E 5 HOH A 83 583 106 HOH HOH . E 5 HOH A 84 584 186 HOH HOH . E 5 HOH A 85 585 65 HOH HOH . E 5 HOH A 86 586 56 HOH HOH . E 5 HOH A 87 587 57 HOH HOH . E 5 HOH A 88 588 20 HOH HOH . E 5 HOH A 89 589 145 HOH HOH . E 5 HOH A 90 590 45 HOH HOH . E 5 HOH A 91 591 159 HOH HOH . E 5 HOH A 92 592 92 HOH HOH . E 5 HOH A 93 593 66 HOH HOH . E 5 HOH A 94 594 98 HOH HOH . E 5 HOH A 95 595 131 HOH HOH . E 5 HOH A 96 596 204 HOH HOH . E 5 HOH A 97 597 73 HOH HOH . E 5 HOH A 98 598 31 HOH HOH . E 5 HOH A 99 599 39 HOH HOH . E 5 HOH A 100 600 171 HOH HOH . E 5 HOH A 101 601 85 HOH HOH . E 5 HOH A 102 602 222 HOH HOH . E 5 HOH A 103 603 40 HOH HOH . E 5 HOH A 104 604 191 HOH HOH . E 5 HOH A 105 605 93 HOH HOH . E 5 HOH A 106 606 42 HOH HOH . E 5 HOH A 107 607 49 HOH HOH . E 5 HOH A 108 608 64 HOH HOH . E 5 HOH A 109 609 132 HOH HOH . E 5 HOH A 110 610 161 HOH HOH . E 5 HOH A 111 611 211 HOH HOH . E 5 HOH A 112 612 15 HOH HOH . E 5 HOH A 113 613 201 HOH HOH . E 5 HOH A 114 614 172 HOH HOH . E 5 HOH A 115 615 91 HOH HOH . E 5 HOH A 116 616 16 HOH HOH . E 5 HOH A 117 617 59 HOH HOH . E 5 HOH A 118 618 167 HOH HOH . E 5 HOH A 119 619 136 HOH HOH . E 5 HOH A 120 620 102 HOH HOH . E 5 HOH A 121 621 123 HOH HOH . E 5 HOH A 122 622 12 HOH HOH . E 5 HOH A 123 623 112 HOH HOH . E 5 HOH A 124 624 109 HOH HOH . E 5 HOH A 125 625 68 HOH HOH . E 5 HOH A 126 626 121 HOH HOH . E 5 HOH A 127 627 36 HOH HOH . E 5 HOH A 128 628 143 HOH HOH . E 5 HOH A 129 629 87 HOH HOH . E 5 HOH A 130 630 75 HOH HOH . E 5 HOH A 131 631 70 HOH HOH . E 5 HOH A 132 632 23 HOH HOH . E 5 HOH A 133 633 25 HOH HOH . E 5 HOH A 134 634 212 HOH HOH . E 5 HOH A 135 635 26 HOH HOH . E 5 HOH A 136 636 185 HOH HOH . E 5 HOH A 137 637 199 HOH HOH . E 5 HOH A 138 638 139 HOH HOH . E 5 HOH A 139 639 162 HOH HOH . E 5 HOH A 140 640 193 HOH HOH . E 5 HOH A 141 641 122 HOH HOH . E 5 HOH A 142 642 207 HOH HOH . E 5 HOH A 143 643 129 HOH HOH . E 5 HOH A 144 644 130 HOH HOH . E 5 HOH A 145 645 218 HOH HOH . E 5 HOH A 146 646 6 HOH HOH . E 5 HOH A 147 647 116 HOH HOH . E 5 HOH A 148 648 82 HOH HOH . E 5 HOH A 149 649 147 HOH HOH . E 5 HOH A 150 650 113 HOH HOH . E 5 HOH A 151 651 124 HOH HOH . E 5 HOH A 152 652 128 HOH HOH . E 5 HOH A 153 653 213 HOH HOH . E 5 HOH A 154 654 217 HOH HOH . E 5 HOH A 155 655 115 HOH HOH . E 5 HOH A 156 656 119 HOH HOH . E 5 HOH A 157 657 214 HOH HOH . E 5 HOH A 158 658 187 HOH HOH . E 5 HOH A 159 659 54 HOH HOH . E 5 HOH A 160 660 97 HOH HOH . E 5 HOH A 161 661 158 HOH HOH . E 5 HOH A 162 662 154 HOH HOH . E 5 HOH A 163 663 206 HOH HOH . E 5 HOH A 164 664 95 HOH HOH . E 5 HOH A 165 665 58 HOH HOH . E 5 HOH A 166 666 219 HOH HOH . E 5 HOH A 167 667 176 HOH HOH . E 5 HOH A 168 668 149 HOH HOH . E 5 HOH A 169 669 114 HOH HOH . E 5 HOH A 170 670 160 HOH HOH . E 5 HOH A 171 671 5 HOH HOH . E 5 HOH A 172 672 89 HOH HOH . E 5 HOH A 173 673 225 HOH HOH . E 5 HOH A 174 674 220 HOH HOH . E 5 HOH A 175 675 174 HOH HOH . E 5 HOH A 176 676 21 HOH HOH . E 5 HOH A 177 677 126 HOH HOH . E 5 HOH A 178 678 148 HOH HOH . E 5 HOH A 179 679 140 HOH HOH . E 5 HOH A 180 680 194 HOH HOH . E 5 HOH A 181 681 198 HOH HOH . E 5 HOH A 182 682 142 HOH HOH . E 5 HOH A 183 683 146 HOH HOH . E 5 HOH A 184 684 208 HOH HOH . E 5 HOH A 185 685 182 HOH HOH . E 5 HOH A 186 686 203 HOH HOH . E 5 HOH A 187 687 183 HOH HOH . E 5 HOH A 188 688 196 HOH HOH . E 5 HOH A 189 689 94 HOH HOH . E 5 HOH A 190 690 41 HOH HOH . E 5 HOH A 191 691 195 HOH HOH . E 5 HOH A 192 692 163 HOH HOH . E 5 HOH A 193 693 134 HOH HOH . E 5 HOH A 194 694 202 HOH HOH . E 5 HOH A 195 695 188 HOH HOH . E 5 HOH A 196 696 50 HOH HOH . E 5 HOH A 197 697 107 HOH HOH . E 5 HOH A 198 698 165 HOH HOH . E 5 HOH A 199 699 166 HOH HOH . E 5 HOH A 200 700 200 HOH HOH . E 5 HOH A 201 701 137 HOH HOH . E 5 HOH A 202 702 179 HOH HOH . E 5 HOH A 203 703 197 HOH HOH . E 5 HOH A 204 704 216 HOH HOH . E 5 HOH A 205 705 108 HOH HOH . E 5 HOH A 206 706 105 HOH HOH . E 5 HOH A 207 707 205 HOH HOH . F 5 HOH B 1 201 88 HOH HOH . F 5 HOH B 2 202 192 HOH HOH . F 5 HOH B 3 203 3 HOH HOH . F 5 HOH B 4 204 153 HOH HOH . F 5 HOH B 5 205 189 HOH HOH . F 5 HOH B 6 206 34 HOH HOH . F 5 HOH B 7 207 180 HOH HOH . F 5 HOH B 8 208 22 HOH HOH . F 5 HOH B 9 209 173 HOH HOH . F 5 HOH B 10 210 7 HOH HOH . F 5 HOH B 11 211 52 HOH HOH . F 5 HOH B 12 212 83 HOH HOH . F 5 HOH B 13 213 29 HOH HOH . F 5 HOH B 14 214 170 HOH HOH . F 5 HOH B 15 215 2 HOH HOH . F 5 HOH B 16 216 118 HOH HOH . F 5 HOH B 17 217 4 HOH HOH . F 5 HOH B 18 218 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CEK A1AJD . . . D 4 -12.756 3.663 -19.211 1 12.92 ? CEK A1AJD 101 B 1 HETATM 2 C CEL A1AJD . . . D 4 -14.059 2.766 -19.182 1 14.1 ? CEL A1AJD 101 B 1 HETATM 3 C CEM A1AJD . . . D 4 -13.805 1.244 -18.907 1 15.55 ? CEM A1AJD 101 B 1 HETATM 4 C CEN A1AJD . . . D 4 -14.97 0.515 -18.912 1 14.94 ? CEN A1AJD 101 B 1 HETATM 5 C CEO A1AJD . . . D 4 -15.067 -0.626 -18.108 1 13.82 ? CEO A1AJD 101 B 1 HETATM 6 C CEP A1AJD . . . D 4 -14.186 -1.285 -17.2 1 14.87 ? CEP A1AJD 101 B 1 HETATM 7 C CEQ A1AJD . . . D 4 -14.037 -0.66 -15.788 1 13.75 ? CEQ A1AJD 101 B 1 HETATM 8 C CER A1AJD . . . D 4 -13.069 -1.482 -14.893 1 12.89 ? CER A1AJD 101 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #