data_8VK6 # _model_server_result.job_id PoOi5rEH5CkASBZgKS_XWA _model_server_result.datetime_utc '2025-06-20 14:37:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8VK6 # _exptl.entry_id 8VK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.435 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(2S)-2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]-4'-(trifluoromethoxy)[1,1'-biphenyl]-4-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.5 _cell.angle_gamma 90 _cell.entry_id 8VK6 _cell.length_a 76.686 _cell.length_b 65.537 _cell.length_c 80.962 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N10 A1AB6 . A A1AB6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'C25 H19 F5 N4 O3' _chem_comp.formula_weight 518.435 _chem_comp.id A1AB6 _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(2S)-2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]-4'-(trifluoromethoxy)[1,1'-biphenyl]-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 A1AB6 sing 38 n n C2 C3 A1AB6 sing 39 n n C2 C4 A1AB6 sing 40 n n C2 C5 A1AB6 sing 41 n n C3 N6 A1AB6 sing 42 n n C4 N7 A1AB6 sing 43 n n C5 C12 A1AB6 doub 44 n y C5 C13 A1AB6 sing 45 n y N7 C8 A1AB6 sing 46 n y N7 N9 A1AB6 sing 47 n y C8 N10 A1AB6 doub 48 n y N9 C11 A1AB6 doub 49 n y N10 C11 A1AB6 sing 50 n y C12 C14 A1AB6 sing 51 n y C13 C17 A1AB6 doub 52 n y C13 F18 A1AB6 sing 53 n n C14 C15 A1AB6 doub 54 n y C15 F16 A1AB6 sing 55 n n C15 C17 A1AB6 sing 56 n y N6 C19 A1AB6 sing 57 n n C19 C20 A1AB6 sing 58 n n C20 C21 A1AB6 doub 59 n y C21 C22 A1AB6 sing 60 n y C22 C23 A1AB6 doub 61 n y C23 C24 A1AB6 sing 62 n y C24 C25 A1AB6 doub 63 n y C25 C20 A1AB6 sing 64 n y C19 O26 A1AB6 doub 65 n n C23 C27 A1AB6 sing 66 n n C27 C28 A1AB6 doub 67 n y C28 C29 A1AB6 sing 68 n y C29 C30 A1AB6 doub 69 n y C30 C31 A1AB6 sing 70 n y C31 C32 A1AB6 doub 71 n y C32 C27 A1AB6 sing 72 n y C30 O33 A1AB6 sing 73 n n O33 C34 A1AB6 sing 74 n n C34 F35 A1AB6 sing 75 n n C34 F36 A1AB6 sing 76 n n C34 F37 A1AB6 sing 77 n n C4 HC4B A1AB6 sing 78 n n C4 HC4A A1AB6 sing 79 n n C8 HC8 A1AB6 sing 80 n n N6 HN6 A1AB6 sing 81 n n C11 HC11 A1AB6 sing 82 n n C12 HC12 A1AB6 sing 83 n n C14 HC14 A1AB6 sing 84 n n C17 HC17 A1AB6 sing 85 n n C21 HC21 A1AB6 sing 86 n n C22 HC22 A1AB6 sing 87 n n C24 HC24 A1AB6 sing 88 n n C25 HC25 A1AB6 sing 89 n n C28 HC28 A1AB6 sing 90 n n C29 HC29 A1AB6 sing 91 n n C3 HC3A A1AB6 sing 92 n n C3 HC3B A1AB6 sing 93 n n C31 HC31 A1AB6 sing 94 n n C32 HC32 A1AB6 sing 95 n n O1 HO1 A1AB6 sing 96 n n # _atom_sites.entry_id 8VK6 _atom_sites.fract_transf_matrix[1][1] 0.01304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 A1AB6 A 1 602 701 A1AB6 C46 . D 4 1PE A 1 603 702 1PE 1PE . E 5 LMT A 1 604 703 LMT LMT . F 6 HOH A 1 701 102 HOH HOH . F 6 HOH A 2 702 171 HOH HOH . F 6 HOH A 3 703 41 HOH HOH . F 6 HOH A 4 704 78 HOH HOH . F 6 HOH A 5 705 161 HOH HOH . F 6 HOH A 6 706 76 HOH HOH . F 6 HOH A 7 707 64 HOH HOH . F 6 HOH A 8 708 9 HOH HOH . F 6 HOH A 9 709 165 HOH HOH . F 6 HOH A 10 710 133 HOH HOH . F 6 HOH A 11 711 124 HOH HOH . F 6 HOH A 12 712 153 HOH HOH . F 6 HOH A 13 713 73 HOH HOH . F 6 HOH A 14 714 170 HOH HOH . F 6 HOH A 15 715 119 HOH HOH . F 6 HOH A 16 716 36 HOH HOH . F 6 HOH A 17 717 55 HOH HOH . F 6 HOH A 18 718 82 HOH HOH . F 6 HOH A 19 719 54 HOH HOH . F 6 HOH A 20 720 169 HOH HOH . F 6 HOH A 21 721 6 HOH HOH . F 6 HOH A 22 722 45 HOH HOH . F 6 HOH A 23 723 24 HOH HOH . F 6 HOH A 24 724 91 HOH HOH . F 6 HOH A 25 725 33 HOH HOH . F 6 HOH A 26 726 141 HOH HOH . F 6 HOH A 27 727 10 HOH HOH . F 6 HOH A 28 728 66 HOH HOH . F 6 HOH A 29 729 29 HOH HOH . F 6 HOH A 30 730 51 HOH HOH . F 6 HOH A 31 731 107 HOH HOH . F 6 HOH A 32 732 2 HOH HOH . F 6 HOH A 33 733 90 HOH HOH . F 6 HOH A 34 734 18 HOH HOH . F 6 HOH A 35 735 21 HOH HOH . F 6 HOH A 36 736 74 HOH HOH . F 6 HOH A 37 737 31 HOH HOH . F 6 HOH A 38 738 28 HOH HOH . F 6 HOH A 39 739 70 HOH HOH . F 6 HOH A 40 740 39 HOH HOH . F 6 HOH A 41 741 57 HOH HOH . F 6 HOH A 42 742 98 HOH HOH . F 6 HOH A 43 743 30 HOH HOH . F 6 HOH A 44 744 86 HOH HOH . F 6 HOH A 45 745 47 HOH HOH . F 6 HOH A 46 746 53 HOH HOH . F 6 HOH A 47 747 14 HOH HOH . F 6 HOH A 48 748 38 HOH HOH . F 6 HOH A 49 749 158 HOH HOH . F 6 HOH A 50 750 65 HOH HOH . F 6 HOH A 51 751 8 HOH HOH . F 6 HOH A 52 752 112 HOH HOH . F 6 HOH A 53 753 26 HOH HOH . F 6 HOH A 54 754 4 HOH HOH . F 6 HOH A 55 755 7 HOH HOH . F 6 HOH A 56 756 40 HOH HOH . F 6 HOH A 57 757 134 HOH HOH . F 6 HOH A 58 758 75 HOH HOH . F 6 HOH A 59 759 130 HOH HOH . F 6 HOH A 60 760 46 HOH HOH . F 6 HOH A 61 761 59 HOH HOH . F 6 HOH A 62 762 77 HOH HOH . F 6 HOH A 63 763 13 HOH HOH . F 6 HOH A 64 764 1 HOH HOH . F 6 HOH A 65 765 50 HOH HOH . F 6 HOH A 66 766 160 HOH HOH . F 6 HOH A 67 767 35 HOH HOH . F 6 HOH A 68 768 58 HOH HOH . F 6 HOH A 69 769 108 HOH HOH . F 6 HOH A 70 770 117 HOH HOH . F 6 HOH A 71 771 96 HOH HOH . F 6 HOH A 72 772 23 HOH HOH . F 6 HOH A 73 773 125 HOH HOH . F 6 HOH A 74 774 137 HOH HOH . F 6 HOH A 75 775 68 HOH HOH . F 6 HOH A 76 776 67 HOH HOH . F 6 HOH A 77 777 15 HOH HOH . F 6 HOH A 78 778 19 HOH HOH . F 6 HOH A 79 779 44 HOH HOH . F 6 HOH A 80 780 11 HOH HOH . F 6 HOH A 81 781 3 HOH HOH . F 6 HOH A 82 782 92 HOH HOH . F 6 HOH A 83 783 27 HOH HOH . F 6 HOH A 84 784 37 HOH HOH . F 6 HOH A 85 785 61 HOH HOH . F 6 HOH A 86 786 5 HOH HOH . F 6 HOH A 87 787 89 HOH HOH . F 6 HOH A 88 788 48 HOH HOH . F 6 HOH A 89 789 63 HOH HOH . F 6 HOH A 90 790 71 HOH HOH . F 6 HOH A 91 791 140 HOH HOH . F 6 HOH A 92 792 43 HOH HOH . F 6 HOH A 93 793 147 HOH HOH . F 6 HOH A 94 794 32 HOH HOH . F 6 HOH A 95 795 87 HOH HOH . F 6 HOH A 96 796 16 HOH HOH . F 6 HOH A 97 797 42 HOH HOH . F 6 HOH A 98 798 95 HOH HOH . F 6 HOH A 99 799 93 HOH HOH . F 6 HOH A 100 800 22 HOH HOH . F 6 HOH A 101 801 103 HOH HOH . F 6 HOH A 102 802 20 HOH HOH . F 6 HOH A 103 803 106 HOH HOH . F 6 HOH A 104 804 105 HOH HOH . F 6 HOH A 105 805 84 HOH HOH . F 6 HOH A 106 806 12 HOH HOH . F 6 HOH A 107 807 69 HOH HOH . F 6 HOH A 108 808 85 HOH HOH . F 6 HOH A 109 809 88 HOH HOH . F 6 HOH A 110 810 80 HOH HOH . F 6 HOH A 111 811 49 HOH HOH . F 6 HOH A 112 812 34 HOH HOH . F 6 HOH A 113 813 156 HOH HOH . F 6 HOH A 114 814 60 HOH HOH . F 6 HOH A 115 815 114 HOH HOH . F 6 HOH A 116 816 17 HOH HOH . F 6 HOH A 117 817 110 HOH HOH . F 6 HOH A 118 818 113 HOH HOH . F 6 HOH A 119 819 115 HOH HOH . F 6 HOH A 120 820 101 HOH HOH . F 6 HOH A 121 821 94 HOH HOH . F 6 HOH A 122 822 97 HOH HOH . F 6 HOH A 123 823 100 HOH HOH . F 6 HOH A 124 824 111 HOH HOH . F 6 HOH A 125 825 162 HOH HOH . F 6 HOH A 126 826 81 HOH HOH . F 6 HOH A 127 827 148 HOH HOH . F 6 HOH A 128 828 62 HOH HOH . F 6 HOH A 129 829 79 HOH HOH . F 6 HOH A 130 830 25 HOH HOH . F 6 HOH A 131 831 72 HOH HOH . F 6 HOH A 132 832 131 HOH HOH . F 6 HOH A 133 833 99 HOH HOH . F 6 HOH A 134 834 104 HOH HOH . F 6 HOH A 135 835 109 HOH HOH . F 6 HOH A 136 836 150 HOH HOH . F 6 HOH A 137 837 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 A1AB6 . . . C 3 22.572 10.197 16.065 1 34.56 ? C2 A1AB6 602 A 1 HETATM 2 C C4 A1AB6 . . . C 3 22.497 11.506 16.878 1 32.11 ? C4 A1AB6 602 A 1 HETATM 3 C C5 A1AB6 . . . C 3 23.6 10.356 14.942 1 29.78 ? C5 A1AB6 602 A 1 HETATM 4 N N9 A1AB6 . . . C 3 24.43 13.004 16.982 1 32.75 ? N9 A1AB6 602 A 1 HETATM 5 C C8 A1AB6 . . . C 3 24.58 11.236 18.267 1 28.73 ? C8 A1AB6 602 A 1 HETATM 6 N N7 A1AB6 . . . C 3 23.799 11.882 17.405 1 35.49 ? N7 A1AB6 602 A 1 HETATM 7 N N6 A1AB6 . . . C 3 20.131 9.771 16.406 1 34.83 ? N6 A1AB6 602 A 1 HETATM 8 C C11 A1AB6 . . . C 3 25.574 12.939 17.626 1 30.96 ? C11 A1AB6 602 A 1 HETATM 9 C C12 A1AB6 . . . C 3 24.63 9.438 14.786 1 33.08 ? C12 A1AB6 602 A 1 HETATM 10 C C13 A1AB6 . . . C 3 23.552 11.389 14.011 1 29.79 ? C13 A1AB6 602 A 1 HETATM 11 C C14 A1AB6 . . . C 3 25.546 9.534 13.752 1 31.97 ? C14 A1AB6 602 A 1 HETATM 12 C C15 A1AB6 . . . C 3 25.438 10.588 12.889 1 32.87 ? C15 A1AB6 602 A 1 HETATM 13 C C17 A1AB6 . . . C 3 24.451 11.539 12.986 1 34.37 ? C17 A1AB6 602 A 1 HETATM 14 C C19 A1AB6 . . . C 3 19.307 10.811 16.522 1 35.84 ? C19 A1AB6 602 A 1 HETATM 15 C C20 A1AB6 . . . C 3 18.12 10.679 17.419 1 43.33 ? C20 A1AB6 602 A 1 HETATM 16 C C21 A1AB6 . . . C 3 17.637 9.585 18.134 1 40.49 ? C21 A1AB6 602 A 1 HETATM 17 C C22 A1AB6 . . . C 3 16.445 9.674 18.836 1 37.03 ? C22 A1AB6 602 A 1 HETATM 18 C C23 A1AB6 . . . C 3 15.711 10.862 18.86 1 42.33 ? C23 A1AB6 602 A 1 HETATM 19 C C24 A1AB6 . . . C 3 16.214 11.95 18.155 1 46.57 ? C24 A1AB6 602 A 1 HETATM 20 C C25 A1AB6 . . . C 3 17.397 11.862 17.448 1 46.72 ? C25 A1AB6 602 A 1 HETATM 21 C C27 A1AB6 . . . C 3 14.45 10.994 19.63 1 49.11 ? C27 A1AB6 602 A 1 HETATM 22 C C28 A1AB6 . . . C 3 13.753 9.877 20.092 1 49.57 ? C28 A1AB6 602 A 1 HETATM 23 C C29 A1AB6 . . . C 3 12.58 10.014 20.817 1 47.67 ? C29 A1AB6 602 A 1 HETATM 24 C C3 A1AB6 . . . C 3 21.228 9.788 15.457 1 36.6 ? C3 A1AB6 602 A 1 HETATM 25 C C30 A1AB6 . . . C 3 12.081 11.281 21.087 1 51.01 ? C30 A1AB6 602 A 1 HETATM 26 C C31 A1AB6 . . . C 3 12.755 12.403 20.634 1 50.48 ? C31 A1AB6 602 A 1 HETATM 27 C C32 A1AB6 . . . C 3 13.926 12.255 19.914 1 48.95 ? C32 A1AB6 602 A 1 HETATM 28 C C34 A1AB6 . . . C 3 9.767 11.647 21.101 1 59.17 ? C34 A1AB6 602 A 1 HETATM 29 F F16 A1AB6 . . . C 3 26.37 10.731 11.92 1 34.5 ? F16 A1AB6 602 A 1 HETATM 30 F F18 A1AB6 . . . C 3 22.539 12.286 14.082 1 30.96 ? F18 A1AB6 602 A 1 HETATM 31 F F35 A1AB6 . . . C 3 9.812 12.663 20.243 1 55.79 ? F35 A1AB6 602 A 1 HETATM 32 F F36 A1AB6 . . . C 3 8.746 11.862 21.912 1 60.45 ? F36 A1AB6 602 A 1 HETATM 33 F F37 A1AB6 . . . C 3 9.49 10.561 20.395 1 57.84 ? F37 A1AB6 602 A 1 HETATM 34 N N10 A1AB6 . . . C 3 25.722 11.865 18.431 1 31.11 ? N10 A1AB6 602 A 1 HETATM 35 O O1 A1AB6 . . . C 3 22.973 9.157 16.957 1 33.61 ? O1 A1AB6 602 A 1 HETATM 36 O O26 A1AB6 . . . C 3 19.5 11.848 15.9 1 36.97 ? O26 A1AB6 602 A 1 HETATM 37 O O33 A1AB6 . . . C 3 10.892 11.496 21.81 1 52.01 ? O33 A1AB6 602 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #