data_8VK6 # _model_server_result.job_id zNV9_YsFRDp4Q6YLYnnSIw _model_server_result.datetime_utc '2025-06-20 14:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 8VK6 # _exptl.entry_id 8VK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.5 _cell.angle_gamma 90 _cell.entry_id 8VK6 _cell.length_a 76.686 _cell.length_b 65.537 _cell.length_c 80.962 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N10 A1AB6 . A A1AB6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 372 n n C1B O1B LMT sing 373 n n C1B O5B LMT sing 374 n n C1B H1B LMT sing 375 n n C2B C3B LMT sing 376 n n C2B O2B LMT sing 377 n n C2B H2B LMT sing 378 n n C3B C4B LMT sing 379 n n C3B O3B LMT sing 380 n n C3B H3B LMT sing 381 n n C4B C5B LMT sing 382 n n C4B O4' LMT sing 383 n n C4B H4B LMT sing 384 n n C5B C6B LMT sing 385 n n C5B O5B LMT sing 386 n n C5B H5B LMT sing 387 n n C6B O6B LMT sing 388 n n C6B "H6'2" LMT sing 389 n n C6B "H6'1" LMT sing 390 n n O1B C4' LMT sing 391 n n O2B H2O1 LMT sing 392 n n O3B H3O1 LMT sing 393 n n O4' H4O1 LMT sing 394 n n O6B H6B LMT sing 395 n n C1' C2' LMT sing 396 n n C1' O1' LMT sing 397 n n C1' O5' LMT sing 398 n n C1' H1' LMT sing 399 n n C2' C3' LMT sing 400 n n C2' O2' LMT sing 401 n n C2' H2' LMT sing 402 n n C3' C4' LMT sing 403 n n C3' O3' LMT sing 404 n n C3' H3' LMT sing 405 n n C4' C5' LMT sing 406 n n C4' H4' LMT sing 407 n n C5' C6' LMT sing 408 n n C5' O5' LMT sing 409 n n C5' H5' LMT sing 410 n n C6' O6' LMT sing 411 n n C6' H6D LMT sing 412 n n C6' H6E LMT sing 413 n n O1' C1 LMT sing 414 n n O2' H2O2 LMT sing 415 n n O3' H3O2 LMT sing 416 n n O6' H6' LMT sing 417 n n C1 C2 LMT sing 418 n n C1 H12 LMT sing 419 n n C1 H11 LMT sing 420 n n C2 C3 LMT sing 421 n n C2 H22 LMT sing 422 n n C2 H21 LMT sing 423 n n C3 C4 LMT sing 424 n n C3 H32 LMT sing 425 n n C3 H31 LMT sing 426 n n C4 C5 LMT sing 427 n n C4 H42 LMT sing 428 n n C4 H41 LMT sing 429 n n C5 C6 LMT sing 430 n n C5 H52 LMT sing 431 n n C5 H51 LMT sing 432 n n C6 C7 LMT sing 433 n n C6 H62 LMT sing 434 n n C6 H61 LMT sing 435 n n C7 C8 LMT sing 436 n n C7 H72 LMT sing 437 n n C7 H71 LMT sing 438 n n C8 C9 LMT sing 439 n n C8 H82 LMT sing 440 n n C8 H81 LMT sing 441 n n C9 C10 LMT sing 442 n n C9 H92 LMT sing 443 n n C9 H91 LMT sing 444 n n C10 C11 LMT sing 445 n n C10 H102 LMT sing 446 n n C10 H101 LMT sing 447 n n C11 C12 LMT sing 448 n n C11 H112 LMT sing 449 n n C11 H111 LMT sing 450 n n C12 H123 LMT sing 451 n n C12 H122 LMT sing 452 n n C12 H121 LMT sing 453 n n # _atom_sites.entry_id 8VK6 _atom_sites.fract_transf_matrix[1][1] 0.01304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 A1AB6 A 1 602 701 A1AB6 C46 . D 4 1PE A 1 603 702 1PE 1PE . E 5 LMT A 1 604 703 LMT LMT . F 6 HOH A 1 701 102 HOH HOH . F 6 HOH A 2 702 171 HOH HOH . F 6 HOH A 3 703 41 HOH HOH . F 6 HOH A 4 704 78 HOH HOH . F 6 HOH A 5 705 161 HOH HOH . F 6 HOH A 6 706 76 HOH HOH . F 6 HOH A 7 707 64 HOH HOH . F 6 HOH A 8 708 9 HOH HOH . F 6 HOH A 9 709 165 HOH HOH . F 6 HOH A 10 710 133 HOH HOH . F 6 HOH A 11 711 124 HOH HOH . F 6 HOH A 12 712 153 HOH HOH . F 6 HOH A 13 713 73 HOH HOH . F 6 HOH A 14 714 170 HOH HOH . F 6 HOH A 15 715 119 HOH HOH . F 6 HOH A 16 716 36 HOH HOH . F 6 HOH A 17 717 55 HOH HOH . F 6 HOH A 18 718 82 HOH HOH . F 6 HOH A 19 719 54 HOH HOH . F 6 HOH A 20 720 169 HOH HOH . F 6 HOH A 21 721 6 HOH HOH . F 6 HOH A 22 722 45 HOH HOH . F 6 HOH A 23 723 24 HOH HOH . F 6 HOH A 24 724 91 HOH HOH . F 6 HOH A 25 725 33 HOH HOH . F 6 HOH A 26 726 141 HOH HOH . F 6 HOH A 27 727 10 HOH HOH . F 6 HOH A 28 728 66 HOH HOH . F 6 HOH A 29 729 29 HOH HOH . F 6 HOH A 30 730 51 HOH HOH . F 6 HOH A 31 731 107 HOH HOH . F 6 HOH A 32 732 2 HOH HOH . F 6 HOH A 33 733 90 HOH HOH . F 6 HOH A 34 734 18 HOH HOH . F 6 HOH A 35 735 21 HOH HOH . F 6 HOH A 36 736 74 HOH HOH . F 6 HOH A 37 737 31 HOH HOH . F 6 HOH A 38 738 28 HOH HOH . F 6 HOH A 39 739 70 HOH HOH . F 6 HOH A 40 740 39 HOH HOH . F 6 HOH A 41 741 57 HOH HOH . F 6 HOH A 42 742 98 HOH HOH . F 6 HOH A 43 743 30 HOH HOH . F 6 HOH A 44 744 86 HOH HOH . F 6 HOH A 45 745 47 HOH HOH . F 6 HOH A 46 746 53 HOH HOH . F 6 HOH A 47 747 14 HOH HOH . F 6 HOH A 48 748 38 HOH HOH . F 6 HOH A 49 749 158 HOH HOH . F 6 HOH A 50 750 65 HOH HOH . F 6 HOH A 51 751 8 HOH HOH . F 6 HOH A 52 752 112 HOH HOH . F 6 HOH A 53 753 26 HOH HOH . F 6 HOH A 54 754 4 HOH HOH . F 6 HOH A 55 755 7 HOH HOH . F 6 HOH A 56 756 40 HOH HOH . F 6 HOH A 57 757 134 HOH HOH . F 6 HOH A 58 758 75 HOH HOH . F 6 HOH A 59 759 130 HOH HOH . F 6 HOH A 60 760 46 HOH HOH . F 6 HOH A 61 761 59 HOH HOH . F 6 HOH A 62 762 77 HOH HOH . F 6 HOH A 63 763 13 HOH HOH . F 6 HOH A 64 764 1 HOH HOH . F 6 HOH A 65 765 50 HOH HOH . F 6 HOH A 66 766 160 HOH HOH . F 6 HOH A 67 767 35 HOH HOH . F 6 HOH A 68 768 58 HOH HOH . F 6 HOH A 69 769 108 HOH HOH . F 6 HOH A 70 770 117 HOH HOH . F 6 HOH A 71 771 96 HOH HOH . F 6 HOH A 72 772 23 HOH HOH . F 6 HOH A 73 773 125 HOH HOH . F 6 HOH A 74 774 137 HOH HOH . F 6 HOH A 75 775 68 HOH HOH . F 6 HOH A 76 776 67 HOH HOH . F 6 HOH A 77 777 15 HOH HOH . F 6 HOH A 78 778 19 HOH HOH . F 6 HOH A 79 779 44 HOH HOH . F 6 HOH A 80 780 11 HOH HOH . F 6 HOH A 81 781 3 HOH HOH . F 6 HOH A 82 782 92 HOH HOH . F 6 HOH A 83 783 27 HOH HOH . F 6 HOH A 84 784 37 HOH HOH . F 6 HOH A 85 785 61 HOH HOH . F 6 HOH A 86 786 5 HOH HOH . F 6 HOH A 87 787 89 HOH HOH . F 6 HOH A 88 788 48 HOH HOH . F 6 HOH A 89 789 63 HOH HOH . F 6 HOH A 90 790 71 HOH HOH . F 6 HOH A 91 791 140 HOH HOH . F 6 HOH A 92 792 43 HOH HOH . F 6 HOH A 93 793 147 HOH HOH . F 6 HOH A 94 794 32 HOH HOH . F 6 HOH A 95 795 87 HOH HOH . F 6 HOH A 96 796 16 HOH HOH . F 6 HOH A 97 797 42 HOH HOH . F 6 HOH A 98 798 95 HOH HOH . F 6 HOH A 99 799 93 HOH HOH . F 6 HOH A 100 800 22 HOH HOH . F 6 HOH A 101 801 103 HOH HOH . F 6 HOH A 102 802 20 HOH HOH . F 6 HOH A 103 803 106 HOH HOH . F 6 HOH A 104 804 105 HOH HOH . F 6 HOH A 105 805 84 HOH HOH . F 6 HOH A 106 806 12 HOH HOH . F 6 HOH A 107 807 69 HOH HOH . F 6 HOH A 108 808 85 HOH HOH . F 6 HOH A 109 809 88 HOH HOH . F 6 HOH A 110 810 80 HOH HOH . F 6 HOH A 111 811 49 HOH HOH . F 6 HOH A 112 812 34 HOH HOH . F 6 HOH A 113 813 156 HOH HOH . F 6 HOH A 114 814 60 HOH HOH . F 6 HOH A 115 815 114 HOH HOH . F 6 HOH A 116 816 17 HOH HOH . F 6 HOH A 117 817 110 HOH HOH . F 6 HOH A 118 818 113 HOH HOH . F 6 HOH A 119 819 115 HOH HOH . F 6 HOH A 120 820 101 HOH HOH . F 6 HOH A 121 821 94 HOH HOH . F 6 HOH A 122 822 97 HOH HOH . F 6 HOH A 123 823 100 HOH HOH . F 6 HOH A 124 824 111 HOH HOH . F 6 HOH A 125 825 162 HOH HOH . F 6 HOH A 126 826 81 HOH HOH . F 6 HOH A 127 827 148 HOH HOH . F 6 HOH A 128 828 62 HOH HOH . F 6 HOH A 129 829 79 HOH HOH . F 6 HOH A 130 830 25 HOH HOH . F 6 HOH A 131 831 72 HOH HOH . F 6 HOH A 132 832 131 HOH HOH . F 6 HOH A 133 833 99 HOH HOH . F 6 HOH A 134 834 104 HOH HOH . F 6 HOH A 135 835 109 HOH HOH . F 6 HOH A 136 836 150 HOH HOH . F 6 HOH A 137 837 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . E 5 44.786 13.981 11.061 1 58.62 ? C1B LMT 604 A 1 HETATM 2 C C2B LMT . . . E 5 44.382 12.876 10.056 1 57.36 ? C2B LMT 604 A 1 HETATM 3 C C3B LMT . . . E 5 43.99 13.486 8.702 1 54.43 ? C3B LMT 604 A 1 HETATM 4 C C4B LMT . . . E 5 42.96 14.635 8.886 1 51.93 ? C4B LMT 604 A 1 HETATM 5 C C5B LMT . . . E 5 43.511 15.607 9.947 1 55.1 ? C5B LMT 604 A 1 HETATM 6 C C6B LMT . . . E 5 42.522 16.734 10.182 1 52.27 ? C6B LMT 604 A 1 HETATM 7 O O1B LMT . . . E 5 45.962 14.587 10.628 1 65.71 ? O1B LMT 604 A 1 HETATM 8 O O2B LMT . . . E 5 45.436 11.993 9.901 1 55.7 ? O2B LMT 604 A 1 HETATM 9 O O3B LMT . . . E 5 43.55 12.504 7.861 1 59.52 ? O3B LMT 604 A 1 HETATM 10 O O4' LMT . . . E 5 42.752 15.315 7.703 1 49.95 ? O4' LMT 604 A 1 HETATM 11 O O5B LMT . . . E 5 43.775 14.948 11.157 1 58.27 ? O5B LMT 604 A 1 HETATM 12 O O6B LMT . . . E 5 41.361 16.215 10.705 1 55.52 ? O6B LMT 604 A 1 HETATM 13 C C1' LMT . . . E 5 49.832 15.559 11.556 1 76.33 ? C1' LMT 604 A 1 HETATM 14 C C2' LMT . . . E 5 49.509 14.06 11.684 1 74.33 ? C2' LMT 604 A 1 HETATM 15 C C3' LMT . . . E 5 48.167 13.767 10.983 1 69.5 ? C3' LMT 604 A 1 HETATM 16 C C4' LMT . . . E 5 47.052 14.68 11.524 1 65.12 ? C4' LMT 604 A 1 HETATM 17 C C5' LMT . . . E 5 47.58 16.136 11.446 1 67.11 ? C5' LMT 604 A 1 HETATM 18 C C6' LMT . . . E 5 46.571 17.156 11.92 1 55.83 ? C6' LMT 604 A 1 HETATM 19 O O1' LMT . . . E 5 50.994 15.863 12.22 1 74.66 ? O1' LMT 604 A 1 HETATM 20 O O2' LMT . . . E 5 50.495 13.34 11.057 1 83.61 ? O2' LMT 604 A 1 HETATM 21 O O3' LMT . . . E 5 47.827 12.455 11.146 1 72.91 ? O3' LMT 604 A 1 HETATM 22 O O5' LMT . . . E 5 48.783 16.299 12.163 1 71.84 ? O5' LMT 604 A 1 HETATM 23 O O6' LMT . . . E 5 47.015 18.373 11.471 1 63.59 ? O6' LMT 604 A 1 HETATM 24 C C1 LMT . . . E 5 51.028 15.472 13.575 1 76.12 ? C1 LMT 604 A 1 HETATM 25 C C2 LMT . . . E 5 52.292 14.674 13.732 1 81.15 ? C2 LMT 604 A 1 HETATM 26 C C3 LMT . . . E 5 53.347 15.275 14.599 1 79.06 ? C3 LMT 604 A 1 HETATM 27 C C4 LMT . . . E 5 54.466 15.724 13.697 1 82.6 ? C4 LMT 604 A 1 HETATM 28 C C5 LMT . . . E 5 55.625 16.193 14.516 1 86.35 ? C5 LMT 604 A 1 HETATM 29 C C6 LMT . . . E 5 56.709 15.167 14.611 1 88.14 ? C6 LMT 604 A 1 HETATM 30 C C7 LMT . . . E 5 57.786 15.657 15.537 1 87.8 ? C7 LMT 604 A 1 HETATM 31 C C8 LMT . . . E 5 59.018 14.836 15.341 1 88.63 ? C8 LMT 604 A 1 HETATM 32 C C9 LMT . . . E 5 60.2 15.305 16.136 1 89.92 ? C9 LMT 604 A 1 HETATM 33 C C10 LMT . . . E 5 61.016 16.207 15.248 1 91.12 ? C10 LMT 604 A 1 HETATM 34 C C11 LMT . . . E 5 61.717 17.275 16.028 1 84.44 ? C11 LMT 604 A 1 HETATM 35 C C12 LMT . . . E 5 62.846 16.723 16.835 1 80.52 ? C12 LMT 604 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #