data_8VKZ # _model_server_result.job_id VhcLeIyJnGVnnEBQR0SPRg _model_server_result.datetime_utc '2024-10-26 02:35:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 8VKZ # _exptl.entry_id 8VKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 569.687 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4aR,4bS,5R,6aS,6bS,8R,9aR,10aR,10bR)-8-{4-[(3-aminophenyl)methyl]phenyl}-5-hydroxy-6b-(hydroxyacetyl)-4a,6a-dimethyl-4a,4b,5,6,6a,6b,9a,10,10a,10b,11,12-dodecahydro-2H,8H-naphtho[2',1':4,5]indeno[1,2-d][1,3]dioxol-2-one" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.46 _cell.angle_gamma 90 _cell.entry_id 8VKZ _cell.length_a 38.51 _cell.length_b 141.65 _cell.length_c 47.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C35 H39 N O6' _chem_comp.formula_weight 569.687 _chem_comp.id A1ACE _chem_comp.mon_nstd_flag . _chem_comp.name "(4aR,4bS,5R,6aS,6bS,8R,9aR,10aR,10bR)-8-{4-[(3-aminophenyl)methyl]phenyl}-5-hydroxy-6b-(hydroxyacetyl)-4a,6a-dimethyl-4a,4b,5,6,6a,6b,9a,10,10a,10b,11,12-dodecahydro-2H,8H-naphtho[2',1':4,5]indeno[1,2-d][1,3]dioxol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 A1ACE sing 1 n n C1 C2 A1ACE sing 2 n n C2 C3 A1ACE sing 3 n n O C3 A1ACE sing 4 n n C3 C4 A1ACE sing 5 n n C4 C5 A1ACE sing 6 n n C6 C5 A1ACE sing 7 n n C7 C6 A1ACE sing 8 n n C8 C7 A1ACE sing 9 n n C8 C9 A1ACE doub 10 n n C9 C10 A1ACE sing 11 n n O1 C10 A1ACE doub 12 n n C10 C11 A1ACE sing 13 n n C11 C12 A1ACE doub 14 n n C12 C13 A1ACE sing 15 n n C4 C13 A1ACE sing 16 n n C13 C8 A1ACE sing 17 n n C14 C13 A1ACE sing 18 n n C5 C15 A1ACE sing 19 n n C1 C15 A1ACE sing 20 n n C15 C16 A1ACE sing 21 n n C16 C17 A1ACE sing 22 n n C17 O2 A1ACE sing 23 n n O2 C18 A1ACE sing 24 n n C18 O3 A1ACE sing 25 n n O3 C19 A1ACE sing 26 n n C1 C19 A1ACE sing 27 n n C17 C19 A1ACE sing 28 n n C19 C20 A1ACE sing 29 n n C20 O4 A1ACE doub 30 n n C21 C20 A1ACE sing 31 n n O5 C21 A1ACE sing 32 n n C22 C18 A1ACE sing 33 n n C22 C23 A1ACE doub 34 n y C23 C24 A1ACE sing 35 n y C24 C25 A1ACE doub 36 n y C26 C25 A1ACE sing 37 n n C27 C26 A1ACE sing 38 n n C27 C28 A1ACE doub 39 n y C28 C29 A1ACE sing 40 n y C29 C30 A1ACE doub 41 n y C30 C31 A1ACE sing 42 n y N C31 A1ACE sing 43 n n C31 C32 A1ACE doub 44 n y C32 C27 A1ACE sing 45 n y C25 C33 A1ACE sing 46 n y C33 C34 A1ACE doub 47 n y C34 C22 A1ACE sing 48 n y C4 H1 A1ACE sing 49 n n C5 H2 A1ACE sing 50 n n C6 H12 A1ACE sing 51 n n C6 H13 A1ACE sing 52 n n C7 H15 A1ACE sing 53 n n C7 H14 A1ACE sing 54 n n C15 H3 A1ACE sing 55 n n C17 H4 A1ACE sing 56 n n C21 H25 A1ACE sing 57 n n C21 H24 A1ACE sing 58 n n C24 H28 A1ACE sing 59 n n C26 H30 A1ACE sing 60 n n C26 H29 A1ACE sing 61 n n C28 H31 A1ACE sing 62 n n C29 H32 A1ACE sing 63 n n C34 H38 A1ACE sing 64 n n C23 H27 A1ACE sing 65 n n C33 H37 A1ACE sing 66 n n C30 H33 A1ACE sing 67 n n C32 H36 A1ACE sing 68 n n C11 H17 A1ACE sing 69 n n C9 H16 A1ACE sing 70 n n C12 H18 A1ACE sing 71 n n C16 H22 A1ACE sing 72 n n C16 H23 A1ACE sing 73 n n C2 H9 A1ACE sing 74 n n C2 H10 A1ACE sing 75 n n C18 H5 A1ACE sing 76 n n C3 H A1ACE sing 77 n n C14 H21 A1ACE sing 78 n n C14 H19 A1ACE sing 79 n n C14 H20 A1ACE sing 80 n n C H8 A1ACE sing 81 n n C H7 A1ACE sing 82 n n C H6 A1ACE sing 83 n n N H35 A1ACE sing 84 n n N H34 A1ACE sing 85 n n O H11 A1ACE sing 86 n n O5 H26 A1ACE sing 87 n n # _atom_sites.entry_id 8VKZ _atom_sites.fract_transf_matrix[1][1] 0.025967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00157 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A1ACE A 1 901 901 A1ACE LIG . F 3 A1ACE B 1 801 902 A1ACE LIG . G 4 HOH A 1 1001 8 HOH HOH . G 4 HOH A 2 1002 25 HOH HOH . G 4 HOH A 3 1003 29 HOH HOH . G 4 HOH A 4 1004 12 HOH HOH . G 4 HOH A 5 1005 4 HOH HOH . G 4 HOH A 6 1006 18 HOH HOH . G 4 HOH A 7 1007 11 HOH HOH . G 4 HOH A 8 1008 1 HOH HOH . G 4 HOH A 9 1009 32 HOH HOH . G 4 HOH A 10 1010 50 HOH HOH . G 4 HOH A 11 1011 3 HOH HOH . G 4 HOH A 12 1012 71 HOH HOH . G 4 HOH A 13 1013 76 HOH HOH . G 4 HOH A 14 1014 7 HOH HOH . G 4 HOH A 15 1015 36 HOH HOH . G 4 HOH A 16 1016 60 HOH HOH . G 4 HOH A 17 1017 55 HOH HOH . G 4 HOH A 18 1018 44 HOH HOH . G 4 HOH A 19 1019 2 HOH HOH . G 4 HOH A 20 1020 68 HOH HOH . G 4 HOH A 21 1021 98 HOH HOH . G 4 HOH A 22 1022 69 HOH HOH . G 4 HOH A 23 1023 20 HOH HOH . G 4 HOH A 24 1024 67 HOH HOH . G 4 HOH A 25 1025 21 HOH HOH . G 4 HOH A 26 1026 81 HOH HOH . G 4 HOH A 27 1027 54 HOH HOH . G 4 HOH A 28 1028 51 HOH HOH . G 4 HOH A 29 1029 59 HOH HOH . G 4 HOH A 30 1030 79 HOH HOH . G 4 HOH A 31 1031 74 HOH HOH . G 4 HOH A 32 1032 85 HOH HOH . G 4 HOH A 33 1033 66 HOH HOH . G 4 HOH A 34 1034 100 HOH HOH . G 4 HOH A 35 1035 106 HOH HOH . G 4 HOH A 36 1036 17 HOH HOH . G 4 HOH A 37 1037 77 HOH HOH . G 4 HOH A 38 1038 47 HOH HOH . G 4 HOH A 39 1039 64 HOH HOH . G 4 HOH A 40 1040 88 HOH HOH . G 4 HOH A 41 1041 84 HOH HOH . G 4 HOH A 42 1042 73 HOH HOH . G 4 HOH A 43 1043 72 HOH HOH . G 4 HOH A 44 1044 65 HOH HOH . G 4 HOH A 45 1045 53 HOH HOH . G 4 HOH A 46 1046 48 HOH HOH . G 4 HOH A 47 1047 42 HOH HOH . G 4 HOH A 48 1048 93 HOH HOH . G 4 HOH A 49 1049 80 HOH HOH . G 4 HOH A 50 1050 49 HOH HOH . G 4 HOH A 51 1051 10 HOH HOH . H 4 HOH B 1 901 83 HOH HOH . H 4 HOH B 2 902 39 HOH HOH . H 4 HOH B 3 903 33 HOH HOH . H 4 HOH B 4 904 41 HOH HOH . H 4 HOH B 5 905 23 HOH HOH . H 4 HOH B 6 906 78 HOH HOH . H 4 HOH B 7 907 27 HOH HOH . H 4 HOH B 8 908 82 HOH HOH . H 4 HOH B 9 909 95 HOH HOH . H 4 HOH B 10 910 90 HOH HOH . H 4 HOH B 11 911 30 HOH HOH . H 4 HOH B 12 912 45 HOH HOH . H 4 HOH B 13 913 43 HOH HOH . H 4 HOH B 14 914 75 HOH HOH . H 4 HOH B 15 915 35 HOH HOH . H 4 HOH B 16 916 62 HOH HOH . H 4 HOH B 17 917 15 HOH HOH . H 4 HOH B 18 918 19 HOH HOH . H 4 HOH B 19 919 38 HOH HOH . H 4 HOH B 20 920 26 HOH HOH . H 4 HOH B 21 921 13 HOH HOH . H 4 HOH B 22 922 87 HOH HOH . H 4 HOH B 23 923 34 HOH HOH . H 4 HOH B 24 924 5 HOH HOH . H 4 HOH B 25 925 105 HOH HOH . H 4 HOH B 26 926 96 HOH HOH . H 4 HOH B 27 927 31 HOH HOH . H 4 HOH B 28 928 6 HOH HOH . H 4 HOH B 29 929 37 HOH HOH . H 4 HOH B 30 930 46 HOH HOH . H 4 HOH B 31 931 97 HOH HOH . H 4 HOH B 32 932 40 HOH HOH . H 4 HOH B 33 933 24 HOH HOH . H 4 HOH B 34 934 89 HOH HOH . H 4 HOH B 35 935 94 HOH HOH . H 4 HOH B 36 936 9 HOH HOH . H 4 HOH B 37 937 58 HOH HOH . H 4 HOH B 38 938 57 HOH HOH . H 4 HOH B 39 939 70 HOH HOH . H 4 HOH B 40 940 22 HOH HOH . H 4 HOH B 41 941 91 HOH HOH . H 4 HOH B 42 942 92 HOH HOH . H 4 HOH B 43 943 104 HOH HOH . I 4 HOH D 1 101 52 HOH HOH . J 4 HOH E 1 101 63 HOH HOH . J 4 HOH E 2 102 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1ACE . . . F 3 35.043 -28.506 8.537 1 32.32 ? C4 A1ACE 801 B 1 HETATM 2 C C5 A1ACE . . . F 3 36.581 -28.721 8.448 1 32.79 ? C5 A1ACE 801 B 1 HETATM 3 C C6 A1ACE . . . F 3 36.924 -30.193 8.194 1 31.98 ? C6 A1ACE 801 B 1 HETATM 4 C C7 A1ACE . . . F 3 36.271 -31.114 9.222 1 31.67 ? C7 A1ACE 801 B 1 HETATM 5 C C8 A1ACE . . . F 3 34.794 -30.851 9.304 1 31.69 ? C8 A1ACE 801 B 1 HETATM 6 C C10 A1ACE . . . F 3 32.46 -31.565 9.081 1 31.76 ? C10 A1ACE 801 B 1 HETATM 7 C C13 A1ACE . . . F 3 34.394 -29.43 9.638 1 31.6 ? C13 A1ACE 801 B 1 HETATM 8 C C15 A1ACE . . . F 3 37.156 -27.802 7.356 1 33.6 ? C15 A1ACE 801 B 1 HETATM 9 C C17 A1ACE . . . F 3 38.833 -26.605 6.125 1 34.79 ? C17 A1ACE 801 B 1 HETATM 10 C C20 A1ACE . . . F 3 37.897 -24.177 6.549 1 33.66 ? C20 A1ACE 801 B 1 HETATM 11 C C21 A1ACE . . . F 3 36.803 -23.206 6.171 1 34.23 ? C21 A1ACE 801 B 1 HETATM 12 C C22 A1ACE . . . F 3 37 -26.855 3.01 1 39.85 ? C22 A1ACE 801 B 1 HETATM 13 C C24 A1ACE . . . F 3 35.516 -28.582 2.23 1 41.87 ? C24 A1ACE 801 B 1 HETATM 14 C C26 A1ACE . . . F 3 34.173 -28.334 0.106 1 44.67 ? C26 A1ACE 801 B 1 HETATM 15 C C28 A1ACE . . . F 3 34.249 -27.58 -2.303 1 46.75 ? C28 A1ACE 801 B 1 HETATM 16 C C29 A1ACE . . . F 3 34.773 -27.655 -3.583 1 47.08 ? C29 A1ACE 801 B 1 HETATM 17 C C34 A1ACE . . . F 3 36.822 -26.203 1.798 1 41.24 ? C34 A1ACE 801 B 1 HETATM 18 C C23 A1ACE . . . F 3 36.357 -28.068 3.197 1 40.87 ? C23 A1ACE 801 B 1 HETATM 19 C C33 A1ACE . . . F 3 35.965 -26.709 0.838 1 42.1 ? C33 A1ACE 801 B 1 HETATM 20 C C30 A1ACE . . . F 3 35.718 -28.617 -3.896 1 47.03 ? C30 A1ACE 801 B 1 HETATM 21 C C32 A1ACE . . . F 3 35.593 -29.443 -1.649 1 46.55 ? C32 A1ACE 801 B 1 HETATM 22 C C25 A1ACE . . . F 3 35.271 -27.889 1.055 1 42.91 ? C25 A1ACE 801 B 1 HETATM 23 C C27 A1ACE . . . F 3 34.657 -28.472 -1.319 1 46.07 ? C27 A1ACE 801 B 1 HETATM 24 C C31 A1ACE . . . F 3 36.151 -29.522 -2.924 1 47.1 ? C31 A1ACE 801 B 1 HETATM 25 C C11 A1ACE . . . F 3 32.028 -30.208 9.393 1 31.71 ? C11 A1ACE 801 B 1 HETATM 26 C C9 A1ACE . . . F 3 33.895 -31.806 9.033 1 31.4 ? C9 A1ACE 801 B 1 HETATM 27 C C12 A1ACE . . . F 3 32.906 -29.245 9.643 1 31.68 ? C12 A1ACE 801 B 1 HETATM 28 C C16 A1ACE . . . F 3 38.659 -27.836 7.026 1 34.17 ? C16 A1ACE 801 B 1 HETATM 29 C C2 A1ACE . . . F 3 35.348 -26.123 7.63 1 32.98 ? C2 A1ACE 801 B 1 HETATM 30 C C18 A1ACE . . . F 3 37.715 -26.182 4.147 1 37.08 ? C18 A1ACE 801 B 1 HETATM 31 C C3 A1ACE . . . F 3 34.658 -27.005 8.656 1 32.53 ? C3 A1ACE 801 B 1 HETATM 32 C C19 A1ACE . . . F 3 37.593 -25.683 6.373 1 34.6 ? C19 A1ACE 801 B 1 HETATM 33 C C1 A1ACE . . . F 3 36.87 -26.308 7.597 1 33.62 ? C1 A1ACE 801 B 1 HETATM 34 C C14 A1ACE . . . F 3 34.829 -29.092 11.084 1 31.07 ? C14 A1ACE 801 B 1 HETATM 35 C C A1ACE . . . F 3 37.534 -25.787 8.894 1 33.27 ? C A1ACE 801 B 1 HETATM 36 N N A1ACE . . . F 3 37.162 -30.436 -3.198 1 47.33 ? N A1ACE 801 B 1 HETATM 37 O O1 A1ACE . . . F 3 31.64 -32.481 8.915 1 31.92 ? O1 A1ACE 801 B 1 HETATM 38 O O4 A1ACE . . . F 3 38.931 -23.775 7.018 1 32.51 ? O4 A1ACE 801 B 1 HETATM 39 O O2 A1ACE . . . F 3 38.665 -27.048 4.761 1 35.94 ? O2 A1ACE 801 B 1 HETATM 40 O O3 A1ACE . . . F 3 36.802 -25.851 5.19 1 35.7 ? O3 A1ACE 801 B 1 HETATM 41 O O A1ACE . . . F 3 34.871 -26.459 9.957 1 32.35 ? O A1ACE 801 B 1 HETATM 42 O O5 A1ACE . . . F 3 37.035 -21.892 6.652 1 34.83 ? O5 A1ACE 801 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #