data_8VKZ # _model_server_result.job_id ZgaSFcjLYESo7lxT5u-pdQ _model_server_result.datetime_utc '2024-10-26 02:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 8VKZ # _exptl.entry_id 8VKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 569.687 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4aR,4bS,5R,6aS,6bS,8R,9aR,10aR,10bR)-8-{4-[(3-aminophenyl)methyl]phenyl}-5-hydroxy-6b-(hydroxyacetyl)-4a,6a-dimethyl-4a,4b,5,6,6a,6b,9a,10,10a,10b,11,12-dodecahydro-2H,8H-naphtho[2',1':4,5]indeno[1,2-d][1,3]dioxol-2-one" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.46 _cell.angle_gamma 90 _cell.entry_id 8VKZ _cell.length_a 38.51 _cell.length_b 141.65 _cell.length_c 47.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C35 H39 N O6' _chem_comp.formula_weight 569.687 _chem_comp.id A1ACE _chem_comp.mon_nstd_flag . _chem_comp.name "(4aR,4bS,5R,6aS,6bS,8R,9aR,10aR,10bR)-8-{4-[(3-aminophenyl)methyl]phenyl}-5-hydroxy-6b-(hydroxyacetyl)-4a,6a-dimethyl-4a,4b,5,6,6a,6b,9a,10,10a,10b,11,12-dodecahydro-2H,8H-naphtho[2',1':4,5]indeno[1,2-d][1,3]dioxol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 A1ACE sing 1 n n C1 C2 A1ACE sing 2 n n C2 C3 A1ACE sing 3 n n O C3 A1ACE sing 4 n n C3 C4 A1ACE sing 5 n n C4 C5 A1ACE sing 6 n n C6 C5 A1ACE sing 7 n n C7 C6 A1ACE sing 8 n n C8 C7 A1ACE sing 9 n n C8 C9 A1ACE doub 10 n n C9 C10 A1ACE sing 11 n n O1 C10 A1ACE doub 12 n n C10 C11 A1ACE sing 13 n n C11 C12 A1ACE doub 14 n n C12 C13 A1ACE sing 15 n n C4 C13 A1ACE sing 16 n n C13 C8 A1ACE sing 17 n n C14 C13 A1ACE sing 18 n n C5 C15 A1ACE sing 19 n n C1 C15 A1ACE sing 20 n n C15 C16 A1ACE sing 21 n n C16 C17 A1ACE sing 22 n n C17 O2 A1ACE sing 23 n n O2 C18 A1ACE sing 24 n n C18 O3 A1ACE sing 25 n n O3 C19 A1ACE sing 26 n n C1 C19 A1ACE sing 27 n n C17 C19 A1ACE sing 28 n n C19 C20 A1ACE sing 29 n n C20 O4 A1ACE doub 30 n n C21 C20 A1ACE sing 31 n n O5 C21 A1ACE sing 32 n n C22 C18 A1ACE sing 33 n n C22 C23 A1ACE doub 34 n y C23 C24 A1ACE sing 35 n y C24 C25 A1ACE doub 36 n y C26 C25 A1ACE sing 37 n n C27 C26 A1ACE sing 38 n n C27 C28 A1ACE doub 39 n y C28 C29 A1ACE sing 40 n y C29 C30 A1ACE doub 41 n y C30 C31 A1ACE sing 42 n y N C31 A1ACE sing 43 n n C31 C32 A1ACE doub 44 n y C32 C27 A1ACE sing 45 n y C25 C33 A1ACE sing 46 n y C33 C34 A1ACE doub 47 n y C34 C22 A1ACE sing 48 n y C4 H1 A1ACE sing 49 n n C5 H2 A1ACE sing 50 n n C6 H12 A1ACE sing 51 n n C6 H13 A1ACE sing 52 n n C7 H15 A1ACE sing 53 n n C7 H14 A1ACE sing 54 n n C15 H3 A1ACE sing 55 n n C17 H4 A1ACE sing 56 n n C21 H25 A1ACE sing 57 n n C21 H24 A1ACE sing 58 n n C24 H28 A1ACE sing 59 n n C26 H30 A1ACE sing 60 n n C26 H29 A1ACE sing 61 n n C28 H31 A1ACE sing 62 n n C29 H32 A1ACE sing 63 n n C34 H38 A1ACE sing 64 n n C23 H27 A1ACE sing 65 n n C33 H37 A1ACE sing 66 n n C30 H33 A1ACE sing 67 n n C32 H36 A1ACE sing 68 n n C11 H17 A1ACE sing 69 n n C9 H16 A1ACE sing 70 n n C12 H18 A1ACE sing 71 n n C16 H22 A1ACE sing 72 n n C16 H23 A1ACE sing 73 n n C2 H9 A1ACE sing 74 n n C2 H10 A1ACE sing 75 n n C18 H5 A1ACE sing 76 n n C3 H A1ACE sing 77 n n C14 H21 A1ACE sing 78 n n C14 H19 A1ACE sing 79 n n C14 H20 A1ACE sing 80 n n C H8 A1ACE sing 81 n n C H7 A1ACE sing 82 n n C H6 A1ACE sing 83 n n N H35 A1ACE sing 84 n n N H34 A1ACE sing 85 n n O H11 A1ACE sing 86 n n O5 H26 A1ACE sing 87 n n # _atom_sites.entry_id 8VKZ _atom_sites.fract_transf_matrix[1][1] 0.025967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00157 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A1ACE A 1 901 901 A1ACE LIG . F 3 A1ACE B 1 801 902 A1ACE LIG . G 4 HOH A 1 1001 8 HOH HOH . G 4 HOH A 2 1002 25 HOH HOH . G 4 HOH A 3 1003 29 HOH HOH . G 4 HOH A 4 1004 12 HOH HOH . G 4 HOH A 5 1005 4 HOH HOH . G 4 HOH A 6 1006 18 HOH HOH . G 4 HOH A 7 1007 11 HOH HOH . G 4 HOH A 8 1008 1 HOH HOH . G 4 HOH A 9 1009 32 HOH HOH . G 4 HOH A 10 1010 50 HOH HOH . G 4 HOH A 11 1011 3 HOH HOH . G 4 HOH A 12 1012 71 HOH HOH . G 4 HOH A 13 1013 76 HOH HOH . G 4 HOH A 14 1014 7 HOH HOH . G 4 HOH A 15 1015 36 HOH HOH . G 4 HOH A 16 1016 60 HOH HOH . G 4 HOH A 17 1017 55 HOH HOH . G 4 HOH A 18 1018 44 HOH HOH . G 4 HOH A 19 1019 2 HOH HOH . G 4 HOH A 20 1020 68 HOH HOH . G 4 HOH A 21 1021 98 HOH HOH . G 4 HOH A 22 1022 69 HOH HOH . G 4 HOH A 23 1023 20 HOH HOH . G 4 HOH A 24 1024 67 HOH HOH . G 4 HOH A 25 1025 21 HOH HOH . G 4 HOH A 26 1026 81 HOH HOH . G 4 HOH A 27 1027 54 HOH HOH . G 4 HOH A 28 1028 51 HOH HOH . G 4 HOH A 29 1029 59 HOH HOH . G 4 HOH A 30 1030 79 HOH HOH . G 4 HOH A 31 1031 74 HOH HOH . G 4 HOH A 32 1032 85 HOH HOH . G 4 HOH A 33 1033 66 HOH HOH . G 4 HOH A 34 1034 100 HOH HOH . G 4 HOH A 35 1035 106 HOH HOH . G 4 HOH A 36 1036 17 HOH HOH . G 4 HOH A 37 1037 77 HOH HOH . G 4 HOH A 38 1038 47 HOH HOH . G 4 HOH A 39 1039 64 HOH HOH . G 4 HOH A 40 1040 88 HOH HOH . G 4 HOH A 41 1041 84 HOH HOH . G 4 HOH A 42 1042 73 HOH HOH . G 4 HOH A 43 1043 72 HOH HOH . G 4 HOH A 44 1044 65 HOH HOH . G 4 HOH A 45 1045 53 HOH HOH . G 4 HOH A 46 1046 48 HOH HOH . G 4 HOH A 47 1047 42 HOH HOH . G 4 HOH A 48 1048 93 HOH HOH . G 4 HOH A 49 1049 80 HOH HOH . G 4 HOH A 50 1050 49 HOH HOH . G 4 HOH A 51 1051 10 HOH HOH . H 4 HOH B 1 901 83 HOH HOH . H 4 HOH B 2 902 39 HOH HOH . H 4 HOH B 3 903 33 HOH HOH . H 4 HOH B 4 904 41 HOH HOH . H 4 HOH B 5 905 23 HOH HOH . H 4 HOH B 6 906 78 HOH HOH . H 4 HOH B 7 907 27 HOH HOH . H 4 HOH B 8 908 82 HOH HOH . H 4 HOH B 9 909 95 HOH HOH . H 4 HOH B 10 910 90 HOH HOH . H 4 HOH B 11 911 30 HOH HOH . H 4 HOH B 12 912 45 HOH HOH . H 4 HOH B 13 913 43 HOH HOH . H 4 HOH B 14 914 75 HOH HOH . H 4 HOH B 15 915 35 HOH HOH . H 4 HOH B 16 916 62 HOH HOH . H 4 HOH B 17 917 15 HOH HOH . H 4 HOH B 18 918 19 HOH HOH . H 4 HOH B 19 919 38 HOH HOH . H 4 HOH B 20 920 26 HOH HOH . H 4 HOH B 21 921 13 HOH HOH . H 4 HOH B 22 922 87 HOH HOH . H 4 HOH B 23 923 34 HOH HOH . H 4 HOH B 24 924 5 HOH HOH . H 4 HOH B 25 925 105 HOH HOH . H 4 HOH B 26 926 96 HOH HOH . H 4 HOH B 27 927 31 HOH HOH . H 4 HOH B 28 928 6 HOH HOH . H 4 HOH B 29 929 37 HOH HOH . H 4 HOH B 30 930 46 HOH HOH . H 4 HOH B 31 931 97 HOH HOH . H 4 HOH B 32 932 40 HOH HOH . H 4 HOH B 33 933 24 HOH HOH . H 4 HOH B 34 934 89 HOH HOH . H 4 HOH B 35 935 94 HOH HOH . H 4 HOH B 36 936 9 HOH HOH . H 4 HOH B 37 937 58 HOH HOH . H 4 HOH B 38 938 57 HOH HOH . H 4 HOH B 39 939 70 HOH HOH . H 4 HOH B 40 940 22 HOH HOH . H 4 HOH B 41 941 91 HOH HOH . H 4 HOH B 42 942 92 HOH HOH . H 4 HOH B 43 943 104 HOH HOH . I 4 HOH D 1 101 52 HOH HOH . J 4 HOH E 1 101 63 HOH HOH . J 4 HOH E 2 102 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1ACE . . . E 3 19.772 -5.945 7.867 1 38.34 ? C4 A1ACE 901 A 1 HETATM 2 C C5 A1ACE . . . E 3 18.235 -5.772 7.868 1 38.03 ? C5 A1ACE 901 A 1 HETATM 3 C C6 A1ACE . . . E 3 17.849 -4.334 7.481 1 38.59 ? C6 A1ACE 901 A 1 HETATM 4 C C7 A1ACE . . . E 3 18.593 -3.268 8.291 1 38.73 ? C7 A1ACE 901 A 1 HETATM 5 C C8 A1ACE . . . E 3 20.069 -3.554 8.338 1 39.02 ? C8 A1ACE 901 A 1 HETATM 6 C C10 A1ACE . . . E 3 22.399 -2.936 7.89 1 39.87 ? C10 A1ACE 901 A 1 HETATM 7 C C13 A1ACE . . . E 3 20.459 -4.922 8.852 1 38.53 ? C13 A1ACE 901 A 1 HETATM 8 C C15 A1ACE . . . E 3 17.648 -6.755 6.853 1 37.85 ? C15 A1ACE 901 A 1 HETATM 9 C C17 A1ACE . . . E 3 15.927 -8.038 5.756 1 37.56 ? C17 A1ACE 901 A 1 HETATM 10 C C20 A1ACE . . . E 3 16.921 -10.401 6.147 1 36.02 ? C20 A1ACE 901 A 1 HETATM 11 C C21 A1ACE . . . E 3 18.054 -11.362 5.91 1 35.81 ? C21 A1ACE 901 A 1 HETATM 12 C C22 A1ACE . . . E 3 17.58 -7.759 2.581 1 39.36 ? C22 A1ACE 901 A 1 HETATM 13 C C24 A1ACE . . . E 3 17.363 -6.444 0.575 1 40.99 ? C24 A1ACE 901 A 1 HETATM 14 C C26 A1ACE . . . E 3 19.364 -5.474 -0.621 1 42.99 ? C26 A1ACE 901 A 1 HETATM 15 C C28 A1ACE . . . E 3 19.055 -7.164 -2.475 1 44.83 ? C28 A1ACE 901 A 1 HETATM 16 C C29 A1ACE . . . E 3 18.573 -7.527 -3.725 1 45.25 ? C29 A1ACE 901 A 1 HETATM 17 C C34 A1ACE . . . E 3 18.952 -7.604 2.497 1 39.85 ? C34 A1ACE 901 A 1 HETATM 18 C C23 A1ACE . . . E 3 16.794 -7.17 1.604 1 40.27 ? C23 A1ACE 901 A 1 HETATM 19 C C33 A1ACE . . . E 3 19.522 -6.882 1.466 1 40.74 ? C33 A1ACE 901 A 1 HETATM 20 C C30 A1ACE . . . E 3 17.935 -6.596 -4.527 1 45.15 ? C30 A1ACE 901 A 1 HETATM 21 C C32 A1ACE . . . E 3 18.253 -4.942 -2.823 1 44.49 ? C32 A1ACE 901 A 1 HETATM 22 C C25 A1ACE . . . E 3 18.737 -6.286 0.492 1 41.54 ? C25 A1ACE 901 A 1 HETATM 23 C C27 A1ACE . . . E 3 18.886 -5.869 -2.002 1 44.12 ? C27 A1ACE 901 A 1 HETATM 24 C C31 A1ACE . . . E 3 17.779 -5.281 -4.088 1 44.96 ? C31 A1ACE 901 A 1 HETATM 25 C C11 A1ACE . . . E 3 22.826 -4.238 8.388 1 39.68 ? C11 A1ACE 901 A 1 HETATM 26 C C9 A1ACE . . . E 3 20.969 -2.673 7.882 1 39.46 ? C9 A1ACE 901 A 1 HETATM 27 C C12 A1ACE . . . E 3 21.947 -5.127 8.833 1 39.12 ? C12 A1ACE 901 A 1 HETATM 28 C C16 A1ACE . . . E 3 16.135 -6.748 6.573 1 37.77 ? C16 A1ACE 901 A 1 HETATM 29 C C2 A1ACE . . . E 3 19.487 -8.406 7.143 1 37.74 ? C2 A1ACE 901 A 1 HETATM 30 C C18 A1ACE . . . E 3 16.959 -8.496 3.73 1 38.12 ? C18 A1ACE 901 A 1 HETATM 31 C C3 A1ACE . . . E 3 20.229 -7.423 8.051 1 38.43 ? C3 A1ACE 901 A 1 HETATM 32 C C19 A1ACE . . . E 3 17.196 -8.914 5.961 1 37.19 ? C19 A1ACE 901 A 1 HETATM 33 C C1 A1ACE . . . E 3 17.963 -8.239 7.151 1 37.62 ? C1 A1ACE 901 A 1 HETATM 34 C C14 A1ACE . . . E 3 19.996 -5.054 10.327 1 38 ? C14 A1ACE 901 A 1 HETATM 35 C C A1ACE . . . E 3 17.351 -8.724 8.484 1 37.37 ? C A1ACE 901 A 1 HETATM 36 N N A1ACE . . . E 3 17.218 -4.324 -4.908 1 45.49 ? N A1ACE 901 A 1 HETATM 37 O O1 A1ACE . . . E 3 23.221 -2.075 7.536 1 40.25 ? O1 A1ACE 901 A 1 HETATM 38 O O4 A1ACE . . . E 3 15.834 -10.82 6.455 1 35.45 ? O4 A1ACE 901 A 1 HETATM 39 O O2 A1ACE . . . E 3 15.967 -7.693 4.356 1 37.77 ? O2 A1ACE 901 A 1 HETATM 40 O O3 A1ACE . . . E 3 17.924 -8.74 4.745 1 37.67 ? O3 A1ACE 901 A 1 HETATM 41 O O A1ACE . . . E 3 20.247 -7.884 9.405 1 38.76 ? O A1ACE 901 A 1 HETATM 42 O O5 A1ACE . . . E 3 17.759 -12.655 6.373 1 35.63 ? O5 A1ACE 901 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #