data_8VLG # _model_server_result.job_id HFBILYp9NGx4G2T0s4zKyg _model_server_result.datetime_utc '2025-02-05 06:48:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vlg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 8VLG # _exptl.entry_id 8VLG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VLG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 786 NAG 2 n C NAG 2 C 2 NAG A 787 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 151 A CYS 151 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 443 A CYS 443 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 B SG CYS 151 B CYS 151 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 443 B CYS 443 1_555 B SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 94 A ASN 94 1_555 F C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 142 A ASN 142 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 162 A ASN 162 1_555 D C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 142 B ASN 142 1_555 J C1 NAG . B NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 B ND2 ASN 162 B ASN 162 1_555 H C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 46 n y N1A C6A ACO doub 47 n y C2A N3A ACO doub 48 n y C2A H2A ACO sing 49 n n N3A C4A ACO sing 50 n y C4A C5A ACO doub 51 n y C4A N9A ACO sing 52 n y C5A C6A ACO sing 53 n y C5A N7A ACO sing 54 n y C6A N6A ACO sing 55 n n N6A H61A ACO sing 56 n n N6A H62A ACO sing 57 n n N7A C8A ACO doub 58 n y C8A N9A ACO sing 59 n y C8A H8A ACO sing 60 n n N9A C1B ACO sing 61 n n C1B C2B ACO sing 62 n n C1B O4B ACO sing 63 n n C1B H1B ACO sing 64 n n C2B O2B ACO sing 65 n n C2B C3B ACO sing 66 n n C2B H2B ACO sing 67 n n O2B HO2A ACO sing 68 n n C3B O3B ACO sing 69 n n C3B C4B ACO sing 70 n n C3B H3B ACO sing 71 n n O3B P3B ACO sing 72 n n P3B O7A ACO doub 73 n n P3B O8A ACO sing 74 n n P3B O9A ACO sing 75 n n O8A HOA8 ACO sing 76 n n O9A HOA9 ACO sing 77 n n C4B O4B ACO sing 78 n n C4B C5B ACO sing 79 n n C4B H4B ACO sing 80 n n C5B O5B ACO sing 81 n n C5B H51A ACO sing 82 n n C5B H52A ACO sing 83 n n O5B P1A ACO sing 84 n n P1A O1A ACO doub 85 n n P1A O2A ACO sing 86 n n P1A O3A ACO sing 87 n n O2A HOA2 ACO sing 88 n n O3A P2A ACO sing 89 n n P2A O4A ACO doub 90 n n P2A O5A ACO sing 91 n n P2A O6A ACO sing 92 n n O5A HOA5 ACO sing 93 n n O6A CCP ACO sing 94 n n CBP CCP ACO sing 95 n n CBP CDP ACO sing 96 n n CBP CEP ACO sing 97 n n CBP CAP ACO sing 98 n n CCP H121 ACO sing 99 n n CCP H122 ACO sing 100 n n CDP H131 ACO sing 101 n n CDP H132 ACO sing 102 n n CDP H133 ACO sing 103 n n CEP H141 ACO sing 104 n n CEP H142 ACO sing 105 n n CEP H143 ACO sing 106 n n CAP OAP ACO sing 107 n n CAP C9P ACO sing 108 n n CAP H10 ACO sing 109 n n OAP HO1 ACO sing 110 n n C9P O9P ACO doub 111 n n C9P N8P ACO sing 112 n n N8P C7P ACO sing 113 n n N8P HN8 ACO sing 114 n n C7P C6P ACO sing 115 n n C7P H71 ACO sing 116 n n C7P H72 ACO sing 117 n n C6P C5P ACO sing 118 n n C6P H61 ACO sing 119 n n C6P H62 ACO sing 120 n n C5P O5P ACO doub 121 n n C5P N4P ACO sing 122 n n N4P C3P ACO sing 123 n n N4P HN4 ACO sing 124 n n C3P C2P ACO sing 125 n n C3P H31 ACO sing 126 n n C3P H32 ACO sing 127 n n C2P S1P ACO sing 128 n n C2P H21 ACO sing 129 n n C2P H22 ACO sing 130 n n S1P C ACO sing 131 n n C O ACO doub 132 n n C CH3 ACO sing 133 n n CH3 HH31 ACO sing 134 n n CH3 HH32 ACO sing 135 n n CH3 HH33 ACO sing 136 n n # _atom_sites.entry_id 8VLG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 701 778 NAG NAG . E 4 ACO A 1 702 784 ACO ACO . F 3 NAG A 1 703 785 NAG NAG . G 5 A1ACY A 1 704 788 A1ACY MGN . H 3 NAG B 1 701 777 NAG NAG . I 4 ACO B 1 702 781 ACO ACO . J 3 NAG B 1 703 783 NAG NAG . K 5 A1ACY B 1 704 784 A1ACY MGN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . E 4 194.553 169.809 195.377 1 75.91 ? N1A ACO 702 A 1 HETATM 2 C C2A ACO . . . E 4 195.157 170.973 195.12 1 71.73 ? C2A ACO 702 A 1 HETATM 3 N N3A ACO . . . E 4 194.685 172.032 194.461 1 68.95 ? N3A ACO 702 A 1 HETATM 4 C C4A ACO . . . E 4 193.437 171.818 194.035 1 66.62 ? C4A ACO 702 A 1 HETATM 5 C C5A ACO . . . E 4 192.684 170.672 194.222 1 66.72 ? C5A ACO 702 A 1 HETATM 6 C C6A ACO . . . E 4 193.291 169.621 194.934 1 73.55 ? C6A ACO 702 A 1 HETATM 7 N N6A ACO . . . E 4 192.692 168.454 195.192 1 74.65 ? N6A ACO 702 A 1 HETATM 8 N N7A ACO . . . E 4 191.433 170.805 193.641 1 65.36 ? N7A ACO 702 A 1 HETATM 9 C C8A ACO . . . E 4 191.459 172.01 193.127 1 69.68 ? C8A ACO 702 A 1 HETATM 10 N N9A ACO . . . E 4 192.637 172.678 193.326 1 69.49 ? N9A ACO 702 A 1 HETATM 11 C C1B ACO . . . E 4 192.968 174.025 192.876 1 66.49 ? C1B ACO 702 A 1 HETATM 12 C C2B ACO . . . E 4 193.134 174.15 191.363 1 75.5 ? C2B ACO 702 A 1 HETATM 13 O O2B ACO . . . E 4 194.473 173.857 190.98 1 76.91 ? O2B ACO 702 A 1 HETATM 14 C C3B ACO . . . E 4 192.821 175.632 191.171 1 69.63 ? C3B ACO 702 A 1 HETATM 15 O O3B ACO . . . E 4 193.993 176.422 191.461 1 76.95 ? O3B ACO 702 A 1 HETATM 16 P P3B ACO . . . E 4 194.966 176.884 190.317 1 98.88 ? P3B ACO 702 A 1 HETATM 17 O O7A ACO . . . E 4 195.688 175.68 189.818 1 78.52 ? O7A ACO 702 A 1 HETATM 18 O O8A ACO . . . E 4 195.902 177.937 190.914 1 74.51 ? O8A ACO 702 A 1 HETATM 19 O O9A ACO . . . E 4 194.114 177.555 189.237 1 79.9 ? O9A ACO 702 A 1 HETATM 20 C C4B ACO . . . E 4 191.751 175.914 192.225 1 66.74 ? C4B ACO 702 A 1 HETATM 21 O O4B ACO . . . E 4 191.901 174.881 193.228 1 60.43 ? O4B ACO 702 A 1 HETATM 22 C C5B ACO . . . E 4 190.328 175.932 191.723 1 70.19 ? C5B ACO 702 A 1 HETATM 23 O O5B ACO . . . E 4 190.083 174.765 190.913 1 63.58 ? O5B ACO 702 A 1 HETATM 24 P P1A ACO . . . E 4 188.616 174.251 190.645 1 65.47 ? P1A ACO 702 A 1 HETATM 25 O O1A ACO . . . E 4 188.606 173.023 189.826 1 70.76 ? O1A ACO 702 A 1 HETATM 26 O O2A ACO . . . E 4 187.803 175.405 190.071 1 62 ? O2A ACO 702 A 1 HETATM 27 O O3A ACO . . . E 4 188.081 173.988 192.112 1 75.36 ? O3A ACO 702 A 1 HETATM 28 P P2A ACO . . . E 4 187.035 174.661 193.104 1 82.83 ? P2A ACO 702 A 1 HETATM 29 O O4A ACO . . . E 4 186.998 173.973 194.409 1 72.57 ? O4A ACO 702 A 1 HETATM 30 O O5A ACO . . . E 4 187.362 176.15 193.155 1 76.82 ? O5A ACO 702 A 1 HETATM 31 O O6A ACO . . . E 4 185.677 174.467 192.344 1 71.32 ? O6A ACO 702 A 1 HETATM 32 C CBP ACO . . . E 4 183.755 175.591 191.486 1 61.92 ? CBP ACO 702 A 1 HETATM 33 C CCP ACO . . . E 4 184.954 175.705 192.418 1 62.52 ? CCP ACO 702 A 1 HETATM 34 C CDP ACO . . . E 4 182.901 176.856 191.619 1 74.6 ? CDP ACO 702 A 1 HETATM 35 C CEP ACO . . . E 4 184.264 175.467 190.047 1 62.46 ? CEP ACO 702 A 1 HETATM 36 C CAP ACO . . . E 4 182.91 174.343 191.844 1 69 ? CAP ACO 702 A 1 HETATM 37 O OAP ACO . . . E 4 182.604 174.317 193.228 1 81.27 ? OAP ACO 702 A 1 HETATM 38 C C9P ACO . . . E 4 181.642 174.173 191.019 1 69.63 ? C9P ACO 702 A 1 HETATM 39 O O9P ACO . . . E 4 181.685 173.566 189.954 1 74.05 ? O9P ACO 702 A 1 HETATM 40 N N8P ACO . . . E 4 180.518 174.694 191.507 1 67.12 ? N8P ACO 702 A 1 HETATM 41 C C7P ACO . . . E 4 179.245 174.598 190.809 1 65.4 ? C7P ACO 702 A 1 HETATM 42 C C6P ACO . . . E 4 178.413 173.434 191.303 1 64.13 ? C6P ACO 702 A 1 HETATM 43 C C5P ACO . . . E 4 177.432 173.85 192.37 1 71.49 ? C5P ACO 702 A 1 HETATM 44 O O5P ACO . . . E 4 177.663 174.797 193.115 1 75.08 ? O5P ACO 702 A 1 HETATM 45 N N4P ACO . . . E 4 176.317 173.129 192.446 1 65.97 ? N4P ACO 702 A 1 HETATM 46 C C3P ACO . . . E 4 175.269 173.401 193.418 1 59.52 ? C3P ACO 702 A 1 HETATM 47 C C2P ACO . . . E 4 174.412 172.178 193.683 1 71.99 ? C2P ACO 702 A 1 HETATM 48 S S1P ACO . . . E 4 172.714 172.461 193.098 1 96.29 ? S1P ACO 702 A 1 HETATM 49 C C ACO . . . E 4 171.802 171.367 194.145 1 76.68 ? C ACO 702 A 1 HETATM 50 O O ACO . . . E 4 171.212 170.409 193.728 1 65.45 ? O ACO 702 A 1 HETATM 51 C CH3 ACO . . . E 4 171.847 171.767 195.59 1 74.62 ? CH3 ACO 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #