data_8VLL
#
_model_server_result.job_id            r8PiVJXQYm4TOBjBpNoNAg 
_model_server_result.datetime_utc      '2024-12-27 03:20:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vll 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    8VLL 
#
_exptl.entry_id    8VLL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VLL 
_cell.length_a            46.839 
_cell.length_b            73.07 
_cell.length_c            92.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VLL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 65 A HIS 62 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 A SG CYS 94 A CYS 91 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A SG CYS 97 A CYS 94 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 C ZN ZN . A ZN 201 1_555 D O4 PO4 . A PO4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc5 B ND1 HIS 65 B HIS 62 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc6 B SG CYS 94 B CYS 91 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc7 B SG CYS 97 B CYS 94 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc8 I ZN ZN . B ZN 302 1_555 O O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8VLL 
_atom_sites.fract_transf_matrix[1][1]    0.02135 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010774 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 200 ZN ZN . 
D 3 PO4 A 1 202 201 PO4 PO4 . 
E 4 EDO A 1 203 300 EDO EDO . 
F 4 EDO A 1 204 401 EDO EDO . 
G 4 EDO A 1 205 501 EDO EDO . 
H 4 EDO B 1 301 301 EDO EDO . 
I 2 ZN B 1 302 200 ZN ZN . 
J 4 EDO B 1 303 201 EDO EDO . 
K 4 EDO B 1 304 301 EDO EDO . 
L 4 EDO B 1 305 401 EDO EDO . 
M 4 EDO B 1 306 501 EDO EDO . 
N 5 HOH A 1 301 217 HOH HOH . 
N 5 HOH A 2 302 17 HOH HOH . 
N 5 HOH A 3 303 22 HOH HOH . 
N 5 HOH A 4 304 115 HOH HOH . 
N 5 HOH A 5 305 168 HOH HOH . 
N 5 HOH A 6 306 13 HOH HOH . 
N 5 HOH A 7 307 108 HOH HOH . 
N 5 HOH A 8 308 94 HOH HOH . 
N 5 HOH A 9 309 77 HOH HOH . 
N 5 HOH A 10 310 207 HOH HOH . 
N 5 HOH A 11 311 1 HOH HOH . 
N 5 HOH A 12 312 118 HOH HOH . 
N 5 HOH A 13 313 178 HOH HOH . 
N 5 HOH A 14 314 4 HOH HOH . 
N 5 HOH A 15 315 185 HOH HOH . 
N 5 HOH A 16 316 66 HOH HOH . 
N 5 HOH A 17 317 51 HOH HOH . 
N 5 HOH A 18 318 197 HOH HOH . 
N 5 HOH A 19 319 206 HOH HOH . 
N 5 HOH A 20 320 154 HOH HOH . 
N 5 HOH A 21 321 10 HOH HOH . 
N 5 HOH A 22 322 107 HOH HOH . 
N 5 HOH A 23 323 160 HOH HOH . 
N 5 HOH A 24 324 142 HOH HOH . 
N 5 HOH A 25 325 46 HOH HOH . 
N 5 HOH A 26 326 99 HOH HOH . 
N 5 HOH A 27 327 166 HOH HOH . 
N 5 HOH A 28 328 2 HOH HOH . 
N 5 HOH A 29 329 54 HOH HOH . 
N 5 HOH A 30 330 47 HOH HOH . 
N 5 HOH A 31 331 23 HOH HOH . 
N 5 HOH A 32 332 32 HOH HOH . 
N 5 HOH A 33 333 195 HOH HOH . 
N 5 HOH A 34 334 3 HOH HOH . 
N 5 HOH A 35 335 162 HOH HOH . 
N 5 HOH A 36 336 30 HOH HOH . 
N 5 HOH A 37 337 83 HOH HOH . 
N 5 HOH A 38 338 225 HOH HOH . 
N 5 HOH A 39 339 28 HOH HOH . 
N 5 HOH A 40 340 95 HOH HOH . 
N 5 HOH A 41 341 84 HOH HOH . 
N 5 HOH A 42 342 64 HOH HOH . 
N 5 HOH A 43 343 112 HOH HOH . 
N 5 HOH A 44 344 18 HOH HOH . 
N 5 HOH A 45 345 220 HOH HOH . 
N 5 HOH A 46 346 26 HOH HOH . 
N 5 HOH A 47 347 48 HOH HOH . 
N 5 HOH A 48 348 234 HOH HOH . 
N 5 HOH A 49 349 140 HOH HOH . 
N 5 HOH A 50 350 188 HOH HOH . 
N 5 HOH A 51 351 9 HOH HOH . 
N 5 HOH A 52 352 87 HOH HOH . 
N 5 HOH A 53 353 150 HOH HOH . 
N 5 HOH A 54 354 219 HOH HOH . 
N 5 HOH A 55 355 78 HOH HOH . 
N 5 HOH A 56 356 29 HOH HOH . 
N 5 HOH A 57 357 15 HOH HOH . 
N 5 HOH A 58 358 148 HOH HOH . 
N 5 HOH A 59 359 62 HOH HOH . 
N 5 HOH A 60 360 73 HOH HOH . 
N 5 HOH A 61 361 63 HOH HOH . 
N 5 HOH A 62 362 40 HOH HOH . 
N 5 HOH A 63 363 86 HOH HOH . 
N 5 HOH A 64 364 31 HOH HOH . 
N 5 HOH A 65 365 11 HOH HOH . 
N 5 HOH A 66 366 72 HOH HOH . 
N 5 HOH A 67 367 159 HOH HOH . 
N 5 HOH A 68 368 215 HOH HOH . 
N 5 HOH A 69 369 14 HOH HOH . 
N 5 HOH A 70 370 128 HOH HOH . 
N 5 HOH A 71 371 92 HOH HOH . 
N 5 HOH A 72 372 106 HOH HOH . 
N 5 HOH A 73 373 57 HOH HOH . 
N 5 HOH A 74 374 111 HOH HOH . 
N 5 HOH A 75 375 25 HOH HOH . 
N 5 HOH A 76 376 165 HOH HOH . 
N 5 HOH A 77 377 96 HOH HOH . 
N 5 HOH A 78 378 174 HOH HOH . 
N 5 HOH A 79 379 12 HOH HOH . 
N 5 HOH A 80 380 50 HOH HOH . 
N 5 HOH A 81 381 103 HOH HOH . 
N 5 HOH A 82 382 141 HOH HOH . 
N 5 HOH A 83 383 67 HOH HOH . 
N 5 HOH A 84 384 134 HOH HOH . 
N 5 HOH A 85 385 186 HOH HOH . 
N 5 HOH A 86 386 53 HOH HOH . 
N 5 HOH A 87 387 34 HOH HOH . 
N 5 HOH A 88 388 196 HOH HOH . 
N 5 HOH A 89 389 121 HOH HOH . 
N 5 HOH A 90 390 85 HOH HOH . 
N 5 HOH A 91 391 55 HOH HOH . 
N 5 HOH A 92 392 120 HOH HOH . 
N 5 HOH A 93 393 204 HOH HOH . 
N 5 HOH A 94 394 218 HOH HOH . 
N 5 HOH A 95 395 74 HOH HOH . 
N 5 HOH A 96 396 214 HOH HOH . 
N 5 HOH A 97 397 59 HOH HOH . 
N 5 HOH A 98 398 147 HOH HOH . 
N 5 HOH A 99 399 60 HOH HOH . 
N 5 HOH A 100 400 199 HOH HOH . 
N 5 HOH A 101 401 75 HOH HOH . 
N 5 HOH A 102 402 191 HOH HOH . 
N 5 HOH A 103 403 68 HOH HOH . 
N 5 HOH A 104 404 232 HOH HOH . 
N 5 HOH A 105 405 61 HOH HOH . 
N 5 HOH A 106 406 131 HOH HOH . 
N 5 HOH A 107 407 184 HOH HOH . 
N 5 HOH A 108 408 235 HOH HOH . 
N 5 HOH A 109 409 170 HOH HOH . 
N 5 HOH A 110 410 177 HOH HOH . 
N 5 HOH A 111 411 173 HOH HOH . 
N 5 HOH A 112 412 202 HOH HOH . 
N 5 HOH A 113 413 129 HOH HOH . 
N 5 HOH A 114 414 231 HOH HOH . 
N 5 HOH A 115 415 163 HOH HOH . 
N 5 HOH A 116 416 117 HOH HOH . 
N 5 HOH A 117 417 171 HOH HOH . 
N 5 HOH A 118 418 167 HOH HOH . 
N 5 HOH A 119 419 209 HOH HOH . 
N 5 HOH A 120 420 116 HOH HOH . 
N 5 HOH A 121 421 164 HOH HOH . 
N 5 HOH A 122 422 144 HOH HOH . 
O 5 HOH B 1 401 124 HOH HOH . 
O 5 HOH B 2 402 127 HOH HOH . 
O 5 HOH B 3 403 229 HOH HOH . 
O 5 HOH B 4 404 42 HOH HOH . 
O 5 HOH B 5 405 145 HOH HOH . 
O 5 HOH B 6 406 132 HOH HOH . 
O 5 HOH B 7 407 182 HOH HOH . 
O 5 HOH B 8 408 6 HOH HOH . 
O 5 HOH B 9 409 100 HOH HOH . 
O 5 HOH B 10 410 43 HOH HOH . 
O 5 HOH B 11 411 208 HOH HOH . 
O 5 HOH B 12 412 130 HOH HOH . 
O 5 HOH B 13 413 110 HOH HOH . 
O 5 HOH B 14 414 230 HOH HOH . 
O 5 HOH B 15 415 224 HOH HOH . 
O 5 HOH B 16 416 33 HOH HOH . 
O 5 HOH B 17 417 16 HOH HOH . 
O 5 HOH B 18 418 125 HOH HOH . 
O 5 HOH B 19 419 7 HOH HOH . 
O 5 HOH B 20 420 203 HOH HOH . 
O 5 HOH B 21 421 41 HOH HOH . 
O 5 HOH B 22 422 90 HOH HOH . 
O 5 HOH B 23 423 19 HOH HOH . 
O 5 HOH B 24 424 37 HOH HOH . 
O 5 HOH B 25 425 71 HOH HOH . 
O 5 HOH B 26 426 45 HOH HOH . 
O 5 HOH B 27 427 179 HOH HOH . 
O 5 HOH B 28 428 52 HOH HOH . 
O 5 HOH B 29 429 228 HOH HOH . 
O 5 HOH B 30 430 70 HOH HOH . 
O 5 HOH B 31 431 102 HOH HOH . 
O 5 HOH B 32 432 153 HOH HOH . 
O 5 HOH B 33 433 24 HOH HOH . 
O 5 HOH B 34 434 38 HOH HOH . 
O 5 HOH B 35 435 101 HOH HOH . 
O 5 HOH B 36 436 180 HOH HOH . 
O 5 HOH B 37 437 137 HOH HOH . 
O 5 HOH B 38 438 36 HOH HOH . 
O 5 HOH B 39 439 5 HOH HOH . 
O 5 HOH B 40 440 212 HOH HOH . 
O 5 HOH B 41 441 8 HOH HOH . 
O 5 HOH B 42 442 20 HOH HOH . 
O 5 HOH B 43 443 69 HOH HOH . 
O 5 HOH B 44 444 113 HOH HOH . 
O 5 HOH B 45 445 27 HOH HOH . 
O 5 HOH B 46 446 122 HOH HOH . 
O 5 HOH B 47 447 21 HOH HOH . 
O 5 HOH B 48 448 56 HOH HOH . 
O 5 HOH B 49 449 181 HOH HOH . 
O 5 HOH B 50 450 172 HOH HOH . 
O 5 HOH B 51 451 213 HOH HOH . 
O 5 HOH B 52 452 233 HOH HOH . 
O 5 HOH B 53 453 194 HOH HOH . 
O 5 HOH B 54 454 79 HOH HOH . 
O 5 HOH B 55 455 65 HOH HOH . 
O 5 HOH B 56 456 158 HOH HOH . 
O 5 HOH B 57 457 149 HOH HOH . 
O 5 HOH B 58 458 91 HOH HOH . 
O 5 HOH B 59 459 222 HOH HOH . 
O 5 HOH B 60 460 139 HOH HOH . 
O 5 HOH B 61 461 123 HOH HOH . 
O 5 HOH B 62 462 44 HOH HOH . 
O 5 HOH B 63 463 189 HOH HOH . 
O 5 HOH B 64 464 93 HOH HOH . 
O 5 HOH B 65 465 49 HOH HOH . 
O 5 HOH B 66 466 161 HOH HOH . 
O 5 HOH B 67 467 58 HOH HOH . 
O 5 HOH B 68 468 76 HOH HOH . 
O 5 HOH B 69 469 138 HOH HOH . 
O 5 HOH B 70 470 211 HOH HOH . 
O 5 HOH B 71 471 97 HOH HOH . 
O 5 HOH B 72 472 98 HOH HOH . 
O 5 HOH B 73 473 151 HOH HOH . 
O 5 HOH B 74 474 104 HOH HOH . 
O 5 HOH B 75 475 227 HOH HOH . 
O 5 HOH B 76 476 216 HOH HOH . 
O 5 HOH B 77 477 39 HOH HOH . 
O 5 HOH B 78 478 105 HOH HOH . 
O 5 HOH B 79 479 201 HOH HOH . 
O 5 HOH B 80 480 126 HOH HOH . 
O 5 HOH B 81 481 223 HOH HOH . 
O 5 HOH B 82 482 80 HOH HOH . 
O 5 HOH B 83 483 119 HOH HOH . 
O 5 HOH B 84 484 226 HOH HOH . 
O 5 HOH B 85 485 155 HOH HOH . 
O 5 HOH B 86 486 114 HOH HOH . 
O 5 HOH B 87 487 205 HOH HOH . 
O 5 HOH B 88 488 221 HOH HOH . 
O 5 HOH B 89 489 143 HOH HOH . 
O 5 HOH B 90 490 146 HOH HOH . 
O 5 HOH B 91 491 193 HOH HOH . 
O 5 HOH B 92 492 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 -12.169 -10.885 -0.439 1 32.23 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . E 4 -12.196 -10.53 -1.78 1 30.07 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . E 4 -10.75 -11.045 -0.191 1 32.47 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . E 4 -10.373 -10.668 1.117 1 36.17 ? O2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#