data_8VLM # _model_server_result.job_id uy2nw3MiKrwurJCqmWI5HA _model_server_result.datetime_utc '2024-12-10 22:11:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":200}' # _entry.id 8VLM # _exptl.entry_id 8VLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VLM _cell.length_a 54.809 _cell.length_b 112.09 _cell.length_c 116.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 84 A HIS 62 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A SG CYS 113 A CYS 91 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A SG CYS 116 A CYS 94 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 B ND1 HIS 82 B HIS 62 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 B SG CYS 111 B CYS 91 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 B SG CYS 114 B CYS 94 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 C ND1 HIS 84 C HIS 62 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 C SG CYS 113 C CYS 91 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 C SG CYS 116 C CYS 94 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc10 I ZN ZN . C ZN 200 1_555 O O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc11 D ND1 HIS 82 D HIS 62 1_555 K ZN ZN . D ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc12 D SG CYS 111 D CYS 91 1_555 K ZN ZN . D ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc13 D SG CYS 114 D CYS 94 1_555 K ZN ZN . D ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VLM _atom_sites.fract_transf_matrix[1][1] 0.018245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 200 200 ZN ZN . F 3 ZN B 1 201 200 ZN ZN . G 4 EDO B 1 202 201 EDO EDO . H 4 EDO B 1 203 301 EDO EDO . I 3 ZN C 1 200 200 ZN ZN . J 4 EDO C 1 201 201 EDO EDO . K 3 ZN D 1 200 200 ZN ZN . L 4 EDO D 1 201 201 EDO EDO . M 5 HOH A 1 301 15 HOH HOH . M 5 HOH A 2 302 28 HOH HOH . M 5 HOH A 3 303 20 HOH HOH . M 5 HOH A 4 304 3 HOH HOH . M 5 HOH A 5 305 22 HOH HOH . M 5 HOH A 6 306 17 HOH HOH . M 5 HOH A 7 307 2 HOH HOH . M 5 HOH A 8 308 16 HOH HOH . M 5 HOH A 9 309 21 HOH HOH . M 5 HOH A 10 310 14 HOH HOH . M 5 HOH A 11 311 7 HOH HOH . M 5 HOH A 12 312 24 HOH HOH . M 5 HOH A 13 313 27 HOH HOH . N 5 HOH B 1 301 4 HOH HOH . N 5 HOH B 2 302 11 HOH HOH . N 5 HOH B 3 303 12 HOH HOH . N 5 HOH B 4 304 19 HOH HOH . N 5 HOH B 5 305 1 HOH HOH . N 5 HOH B 6 306 9 HOH HOH . N 5 HOH B 7 307 10 HOH HOH . N 5 HOH B 8 308 18 HOH HOH . N 5 HOH B 9 309 30 HOH HOH . O 5 HOH C 1 301 13 HOH HOH . O 5 HOH C 2 302 6 HOH HOH . O 5 HOH C 3 303 26 HOH HOH . O 5 HOH C 4 304 29 HOH HOH . O 5 HOH C 5 305 8 HOH HOH . P 5 HOH D 1 301 25 HOH HOH . P 5 HOH D 2 302 5 HOH HOH . P 5 HOH D 3 303 23 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.486 _atom_site.Cartn_y 20.747 _atom_site.Cartn_z 38.687 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 200 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #