data_8VLM # _model_server_result.job_id uIFolTbPPvi4Qv315kqDaQ _model_server_result.datetime_utc '2024-12-09 20:23:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 8VLM # _exptl.entry_id 8VLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VLM _cell.length_a 54.809 _cell.length_b 112.09 _cell.length_c 116.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 84 A HIS 62 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A SG CYS 113 A CYS 91 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A SG CYS 116 A CYS 94 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 B ND1 HIS 82 B HIS 62 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 B SG CYS 111 B CYS 91 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 B SG CYS 114 B CYS 94 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 C ND1 HIS 84 C HIS 62 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 C SG CYS 113 C CYS 91 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 C SG CYS 116 C CYS 94 1_555 I ZN ZN . C ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc10 I ZN ZN . C ZN 200 1_555 O O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc11 D ND1 HIS 82 D HIS 62 1_555 K ZN ZN . D ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc12 D SG CYS 111 D CYS 91 1_555 K ZN ZN . D ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc13 D SG CYS 114 D CYS 94 1_555 K ZN ZN . D ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8VLM _atom_sites.fract_transf_matrix[1][1] 0.018245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 200 200 ZN ZN . F 3 ZN B 1 201 200 ZN ZN . G 4 EDO B 1 202 201 EDO EDO . H 4 EDO B 1 203 301 EDO EDO . I 3 ZN C 1 200 200 ZN ZN . J 4 EDO C 1 201 201 EDO EDO . K 3 ZN D 1 200 200 ZN ZN . L 4 EDO D 1 201 201 EDO EDO . M 5 HOH A 1 301 15 HOH HOH . M 5 HOH A 2 302 28 HOH HOH . M 5 HOH A 3 303 20 HOH HOH . M 5 HOH A 4 304 3 HOH HOH . M 5 HOH A 5 305 22 HOH HOH . M 5 HOH A 6 306 17 HOH HOH . M 5 HOH A 7 307 2 HOH HOH . M 5 HOH A 8 308 16 HOH HOH . M 5 HOH A 9 309 21 HOH HOH . M 5 HOH A 10 310 14 HOH HOH . M 5 HOH A 11 311 7 HOH HOH . M 5 HOH A 12 312 24 HOH HOH . M 5 HOH A 13 313 27 HOH HOH . N 5 HOH B 1 301 4 HOH HOH . N 5 HOH B 2 302 11 HOH HOH . N 5 HOH B 3 303 12 HOH HOH . N 5 HOH B 4 304 19 HOH HOH . N 5 HOH B 5 305 1 HOH HOH . N 5 HOH B 6 306 9 HOH HOH . N 5 HOH B 7 307 10 HOH HOH . N 5 HOH B 8 308 18 HOH HOH . N 5 HOH B 9 309 30 HOH HOH . O 5 HOH C 1 301 13 HOH HOH . O 5 HOH C 2 302 6 HOH HOH . O 5 HOH C 3 303 26 HOH HOH . O 5 HOH C 4 304 29 HOH HOH . O 5 HOH C 5 305 8 HOH HOH . P 5 HOH D 1 301 25 HOH HOH . P 5 HOH D 2 302 5 HOH HOH . P 5 HOH D 3 303 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 14.966 15.089 -3.213 1 59.6 ? C1 EDO 203 B 1 HETATM 2 O O1 EDO . . . H 4 13.883 15.368 -2.315 1 61.31 ? O1 EDO 203 B 1 HETATM 3 C C2 EDO . . . H 4 15.079 13.581 -3.401 1 66.55 ? C2 EDO 203 B 1 HETATM 4 O O2 EDO . . . H 4 14.238 13.178 -4.49 1 66.68 ? O2 EDO 203 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #