data_8VLO
#
_model_server_result.job_id            eqDG_vZhUb6759Dc6jhiIA 
_model_server_result.datetime_utc      '2025-02-27 10:15:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vlo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2602}' 
#
_entry.id    8VLO 
#
_exptl.entry_id    8VLO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VLO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VLO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 235 n n 
PA O2A NDP sing 236 n n 
PA O5B NDP sing 237 n n 
PA O3 NDP sing 238 n n 
O2A HOA2 NDP sing 239 n n 
O5B C5B NDP sing 240 n n 
C5B C4B NDP sing 241 n n 
C5B H51A NDP sing 242 n n 
C5B H52A NDP sing 243 n n 
C4B O4B NDP sing 244 n n 
C4B C3B NDP sing 245 n n 
C4B H4B NDP sing 246 n n 
O4B C1B NDP sing 247 n n 
C3B O3B NDP sing 248 n n 
C3B C2B NDP sing 249 n n 
C3B H3B NDP sing 250 n n 
O3B HO3A NDP sing 251 n n 
C2B O2B NDP sing 252 n n 
C2B C1B NDP sing 253 n n 
C2B H2B NDP sing 254 n n 
O2B P2B NDP sing 255 n n 
C1B N9A NDP sing 256 n n 
C1B H1B NDP sing 257 n n 
N9A C8A NDP sing 258 n y 
N9A C4A NDP sing 259 n y 
C8A N7A NDP doub 260 n y 
C8A H8A NDP sing 261 n n 
N7A C5A NDP sing 262 n y 
C5A C6A NDP sing 263 n y 
C5A C4A NDP doub 264 n y 
C6A N6A NDP sing 265 n n 
C6A N1A NDP doub 266 n y 
N6A H61A NDP sing 267 n n 
N6A H62A NDP sing 268 n n 
N1A C2A NDP sing 269 n y 
C2A N3A NDP doub 270 n y 
C2A H2A NDP sing 271 n n 
N3A C4A NDP sing 272 n y 
O3 PN NDP sing 273 n n 
PN O1N NDP doub 274 n n 
PN O2N NDP sing 275 n n 
PN O5D NDP sing 276 n n 
O2N H21N NDP sing 277 n n 
O5D C5D NDP sing 278 n n 
C5D C4D NDP sing 279 n n 
C5D H51N NDP sing 280 n n 
C5D H52N NDP sing 281 n n 
C4D O4D NDP sing 282 n n 
C4D C3D NDP sing 283 n n 
C4D H4D NDP sing 284 n n 
O4D C1D NDP sing 285 n n 
C3D O3D NDP sing 286 n n 
C3D C2D NDP sing 287 n n 
C3D H3D NDP sing 288 n n 
O3D HO3N NDP sing 289 n n 
C2D O2D NDP sing 290 n n 
C2D C1D NDP sing 291 n n 
C2D H2D NDP sing 292 n n 
O2D HO2N NDP sing 293 n n 
C1D N1N NDP sing 294 n n 
C1D H1D NDP sing 295 n n 
N1N C2N NDP sing 296 n n 
N1N C6N NDP sing 297 n n 
C2N C3N NDP doub 298 n n 
C2N H2N NDP sing 299 n n 
C3N C7N NDP sing 300 n n 
C3N C4N NDP sing 301 n n 
C7N O7N NDP doub 302 n n 
C7N N7N NDP sing 303 n n 
N7N H71N NDP sing 304 n n 
N7N H72N NDP sing 305 n n 
C4N C5N NDP sing 306 n n 
C4N H41N NDP sing 307 n n 
C4N H42N NDP sing 308 n n 
C5N C6N NDP doub 309 n n 
C5N H5N NDP sing 310 n n 
C6N H6N NDP sing 311 n n 
P2B O1X NDP doub 312 n n 
P2B O2X NDP sing 313 n n 
P2B O3X NDP sing 314 n n 
O2X HOP2 NDP sing 315 n n 
O3X HOP3 NDP sing 316 n n 
#
_atom_sites.entry_id                     8VLO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 2601 2512 NDP NDP . 
D 2 NDP A 1 2602 2513 NDP NDP . 
E 2 NDP B 1 2601 2512 NDP NDP . 
F 2 NDP B 1 2602 2513 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . F 2 214.893 222.849 234.485 1 62.78 ? PA NDP 2602 B 1 
HETATM 2 O O1A NDP . . . F 2 215.495 222.064 235.603 1 73.61 ? O1A NDP 2602 B 1 
HETATM 3 O O2A NDP . . . F 2 214.637 222.162 233.186 1 63.88 ? O2A NDP 2602 B 1 
HETATM 4 O O5B NDP . . . F 2 215.775 224.159 234.224 1 65.92 ? O5B NDP 2602 B 1 
HETATM 5 C C5B NDP . . . F 2 216.193 224.954 235.358 1 65.53 ? C5B NDP 2602 B 1 
HETATM 6 C C4B NDP . . . F 2 217.147 226.019 234.884 1 65.29 ? C4B NDP 2602 B 1 
HETATM 7 O O4B NDP . . . F 2 217.608 226.784 236.026 1 68.51 ? O4B NDP 2602 B 1 
HETATM 8 C C3B NDP . . . F 2 218.417 225.52 234.174 1 66.42 ? C3B NDP 2602 B 1 
HETATM 9 O O3B NDP . . . F 2 218.636 226.258 232.979 1 71.36 ? O3B NDP 2602 B 1 
HETATM 10 C C2B NDP . . . F 2 219.509 225.759 235.21 1 62.14 ? C2B NDP 2602 B 1 
HETATM 11 O O2B NDP . . . F 2 220.792 226.031 234.651 1 66.05 ? O2B NDP 2602 B 1 
HETATM 12 C C1B NDP . . . F 2 218.981 227.024 235.861 1 62.38 ? C1B NDP 2602 B 1 
HETATM 13 N N9A NDP . . . F 2 219.588 227.32 237.149 1 57.51 ? N9A NDP 2602 B 1 
HETATM 14 C C8A NDP . . . F 2 219.401 226.653 238.332 1 68.56 ? C8A NDP 2602 B 1 
HETATM 15 N N7A NDP . . . F 2 220.091 227.158 239.323 1 72.62 ? N7A NDP 2602 B 1 
HETATM 16 C C5A NDP . . . F 2 220.778 228.223 238.758 1 65.75 ? C5A NDP 2602 B 1 
HETATM 17 C C6A NDP . . . F 2 221.683 229.158 239.292 1 64.36 ? C6A NDP 2602 B 1 
HETATM 18 N N6A NDP . . . F 2 222.064 229.176 240.565 1 68.33 ? N6A NDP 2602 B 1 
HETATM 19 N N1A NDP . . . F 2 222.185 230.091 238.45 1 62.42 ? N1A NDP 2602 B 1 
HETATM 20 C C2A NDP . . . F 2 221.796 230.071 237.17 1 60.11 ? C2A NDP 2602 B 1 
HETATM 21 N N3A NDP . . . F 2 220.957 229.243 236.558 1 54.97 ? N3A NDP 2602 B 1 
HETATM 22 C C4A NDP . . . F 2 220.476 228.331 237.416 1 55.51 ? C4A NDP 2602 B 1 
HETATM 23 O O3 NDP . . . F 2 213.522 223.492 235.003 1 63.7 ? O3 NDP 2602 B 1 
HETATM 24 P PN NDP . . . F 2 212.522 224.51 234.28 1 70.57 ? PN NDP 2602 B 1 
HETATM 25 O O1N NDP . . . F 2 213.282 225.208 233.203 1 74.27 ? O1N NDP 2602 B 1 
HETATM 26 O O2N NDP . . . F 2 211.273 223.781 233.918 1 65.04 ? O2N NDP 2602 B 1 
HETATM 27 O O5D NDP . . . F 2 212.222 225.539 235.473 1 72.39 ? O5D NDP 2602 B 1 
HETATM 28 C C5D NDP . . . F 2 211.403 225.101 236.586 1 71.67 ? C5D NDP 2602 B 1 
HETATM 29 C C4D NDP . . . F 2 210.652 226.281 237.145 1 72.16 ? C4D NDP 2602 B 1 
HETATM 30 O O4D NDP . . . F 2 209.231 226.023 237.03 1 71.5 ? O4D NDP 2602 B 1 
HETATM 31 C C3D NDP . . . F 2 210.906 226.586 238.627 1 69.14 ? C3D NDP 2602 B 1 
HETATM 32 O O3D NDP . . . F 2 210.788 227.973 238.915 1 72.61 ? O3D NDP 2602 B 1 
HETATM 33 C C2D NDP . . . F 2 209.815 225.756 239.299 1 71.5 ? C2D NDP 2602 B 1 
HETATM 34 O O2D NDP . . . F 2 209.34 226.252 240.54 1 76.6 ? O2D NDP 2602 B 1 
HETATM 35 C C1D NDP . . . F 2 208.668 225.814 238.303 1 70.03 ? C1D NDP 2602 B 1 
HETATM 36 N N1N NDP . . . F 2 207.909 224.533 238.316 1 68.1 ? N1N NDP 2602 B 1 
HETATM 37 C C2N NDP . . . F 2 208.047 223.609 237.319 1 68.71 ? C2N NDP 2602 B 1 
HETATM 38 C C3N NDP . . . F 2 207.176 222.564 237.197 1 70.03 ? C3N NDP 2602 B 1 
HETATM 39 C C7N NDP . . . F 2 207.509 221.491 236.233 1 73.44 ? C7N NDP 2602 B 1 
HETATM 40 O O7N NDP . . . F 2 208.341 221.696 235.345 1 74.65 ? O7N NDP 2602 B 1 
HETATM 41 N N7N NDP . . . F 2 206.875 220.333 236.344 1 71.55 ? N7N NDP 2602 B 1 
HETATM 42 C C4N NDP . . . F 2 205.948 222.575 238.038 1 68.25 ? C4N NDP 2602 B 1 
HETATM 43 C C5N NDP . . . F 2 206.021 223.486 239.189 1 70.58 ? C5N NDP 2602 B 1 
HETATM 44 C C6N NDP . . . F 2 207.077 224.242 239.367 1 69.25 ? C6N NDP 2602 B 1 
HETATM 45 P P2B NDP . . . F 2 221.508 224.731 234.024 1 82.34 ? P2B NDP 2602 B 1 
HETATM 46 O O1X NDP . . . F 2 220.982 224.588 232.612 1 70.5 ? O1X NDP 2602 B 1 
HETATM 47 O O2X NDP . . . F 2 221.163 223.535 234.885 1 75.42 ? O2X NDP 2602 B 1 
HETATM 48 O O3X NDP . . . F 2 222.99 225.043 234.05 1 74.21 ? O3X NDP 2602 B 1 
HETATM 49 H H51A NDP . . . F 2 216.639 224.382 236.029 1 67.39 ? H51A NDP 2602 B 1 
HETATM 50 H H52A NDP . . . F 2 215.405 225.378 235.779 1 66.46 ? H52A NDP 2602 B 1 
HETATM 51 H H4B NDP . . . F 2 216.658 226.618 234.281 1 66.68 ? H4B NDP 2602 B 1 
HETATM 52 H H3B NDP . . . F 2 218.344 224.552 233.973 1 67.02 ? H3B NDP 2602 B 1 
HETATM 53 H HO3A NDP . . . F 2 218.44 227.073 233.121 1 67.4 ? HO3A NDP 2602 B 1 
HETATM 54 H H2B NDP . . . F 2 219.551 225.019 235.857 1 66.51 ? H2B NDP 2602 B 1 
HETATM 55 H H1B NDP . . . F 2 219.117 227.782 235.252 1 66.76 ? H1B NDP 2602 B 1 
HETATM 56 H H8A NDP . . . F 2 218.829 225.91 238.42 1 67.51 ? H8A NDP 2602 B 1 
HETATM 57 H H61A NDP . . . F 2 221.738 228.585 241.125 1 67.65 ? H61A NDP 2602 B 1 
HETATM 58 H H62A NDP . . . F 2 222.639 229.78 240.839 1 67.46 ? H62A NDP 2602 B 1 
HETATM 59 H H2A NDP . . . F 2 222.174 230.741 236.621 1 66.51 ? H2A NDP 2602 B 1 
HETATM 60 H H51N NDP . . . F 2 211.971 224.709 237.289 1 67.63 ? H51N NDP 2602 B 1 
HETATM 61 H H52N NDP . . . F 2 210.761 224.415 236.284 1 67.63 ? H52N NDP 2602 B 1 
HETATM 62 H H4D NDP . . . F 2 210.875 227.069 236.604 1 67.35 ? H4D NDP 2602 B 1 
HETATM 63 H H3D NDP . . . F 2 211.802 226.254 238.897 1 66.37 ? H3D NDP 2602 B 1 
HETATM 64 H HO3N NDP . . . F 2 210.795 228.402 238.186 1 66.75 ? HO3N NDP 2602 B 1 
HETATM 65 H H2D NDP . . . F 2 210.124 224.828 239.398 1 67.66 ? H2D NDP 2602 B 1 
HETATM 66 H HO2N NDP . . . F 2 209.276 227.095 240.484 1 67.74 ? HO2N NDP 2602 B 1 
HETATM 67 H H1D NDP . . . F 2 208.062 226.557 238.526 1 67.19 ? H1D NDP 2602 B 1 
HETATM 68 H H2N NDP . . . F 2 208.759 223.687 236.711 1 67.46 ? H2N NDP 2602 B 1 
HETATM 69 H H71N NDP . . . F 2 206.446 220.125 237.09 1 67.18 ? H71N NDP 2602 B 1 
HETATM 70 H H72N NDP . . . F 2 206.871 219.763 235.665 1 67.51 ? H72N NDP 2602 B 1 
HETATM 71 H H41N NDP . . . F 2 205.789 221.67 238.375 1 67.23 ? H41N NDP 2602 B 1 
HETATM 72 H H42N NDP . . . F 2 205.178 222.814 237.48 1 67.02 ? H42N NDP 2602 B 1 
HETATM 73 H H5N NDP . . . F 2 205.293 223.53 239.809 1 67.5 ? H5N NDP 2602 B 1 
HETATM 74 H H6N NDP . . . F 2 207.276 224.586 240.22 1 67.04 ? H6N NDP 2602 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           74 
#