data_8VMG
#
_model_server_result.job_id            LyyyenYwJP120uFPsiJuzQ 
_model_server_result.datetime_utc      '2024-11-01 19:38:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vmg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":412}' 
#
_entry.id    8VMG 
#
_exptl.entry_id    8VMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8VMG 
_cell.length_a            195.585 
_cell.length_b            195.585 
_cell.length_c            152.204 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,WB,XB,YB,ZB,AC,BC,CC,EC,GC 1 1 
B,D,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,DC,FC,HC 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 P N N 
? 5 X N N 
? 5 EA N N 
? 5 FA N N 
? 5 GA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 161 A ASN 186 1_555 NA MG MG . A MG 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc2 A OD2 ASP 175 A ASP 200 1_555 NA MG MG . A MG 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc3 E O3A ADP . A ADP 401 1_555 NA MG MG . A MG 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc4 NA MG MG . A MG 436 1_555 EC O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 328 n n 
N O2 NO3 sing 329 n n 
N O3 NO3 sing 330 n n 
#
_atom_sites.entry_id                     8VMG 
_atom_sites.fract_transf_matrix[1][1]    0.005113 
_atom_sites.fract_transf_matrix[1][2]    0.002952 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005904 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ADP A 1 401 401 ADP ADP . 
F 4 EDO A 1 402 404 EDO EDO . 
G 4 EDO A 1 403 407 EDO EDO . 
H 4 EDO A 1 404 409 EDO EDO . 
I 4 EDO A 1 405 410 EDO EDO . 
J 4 EDO A 1 406 411 EDO EDO . 
K 5 NO3 A 1 407 412 NO3 NO3 . 
L 5 NO3 A 1 408 417 NO3 NO3 . 
M 5 NO3 A 1 409 419 NO3 NO3 . 
N 6 GOL A 1 410 420 GOL GOL . 
O 4 EDO A 1 411 421 EDO EDO . 
P 5 NO3 A 1 412 423 NO3 NO3 . 
Q 4 EDO A 1 413 424 EDO EDO . 
R 6 GOL A 1 414 428 GOL GOL . 
S 4 EDO A 1 415 431 EDO EDO . 
T 4 EDO A 1 416 433 EDO EDO . 
U 4 EDO A 1 417 435 EDO EDO . 
V 4 EDO A 1 418 438 EDO EDO . 
W 6 GOL A 1 419 440 GOL GOL . 
X 5 NO3 A 1 420 452 NO3 NO3 . 
Y 4 EDO A 1 421 453 EDO EDO . 
Z 4 EDO A 1 422 454 EDO EDO . 
AA 4 EDO A 1 423 455 EDO EDO . 
BA 4 EDO A 1 424 456 EDO EDO . 
CA 6 GOL A 1 425 457 GOL GOL . 
DA 4 EDO A 1 426 458 EDO EDO . 
EA 5 NO3 A 1 427 459 NO3 NO3 . 
FA 5 NO3 A 1 428 460 NO3 NO3 . 
GA 5 NO3 A 1 429 461 NO3 NO3 . 
HA 7 SO4 A 1 430 1 SO4 SO4 . 
IA 7 SO4 A 1 431 2 SO4 SO4 . 
JA 7 SO4 A 1 432 11 SO4 SO4 . 
KA 7 SO4 A 1 433 15 SO4 SO4 . 
LA 7 SO4 A 1 434 17 SO4 SO4 . 
MA 7 SO4 A 1 435 19 SO4 SO4 . 
NA 8 MG A 1 436 1 MG MG . 
OA 9 CL A 1 437 9 CL CL . 
PA 9 CL A 1 438 10 CL CL . 
QA 9 CL A 1 439 15 CL CL . 
RA 9 CL A 1 440 20 CL CL . 
SA 9 CL A 1 441 23 CL CL . 
TA 10 MES B 1 401 401 MES MES . 
UA 4 EDO B 1 402 403 EDO EDO . 
VA 4 EDO B 1 403 405 EDO EDO . 
WA 4 EDO B 1 404 406 EDO EDO . 
XA 4 EDO B 1 405 408 EDO EDO . 
YA 4 EDO B 1 406 410 EDO EDO . 
ZA 4 EDO B 1 407 414 EDO EDO . 
AB 4 EDO B 1 408 415 EDO EDO . 
BB 4 EDO B 1 409 416 EDO EDO . 
CB 4 EDO B 1 410 423 EDO EDO . 
DB 4 EDO B 1 411 424 EDO EDO . 
EB 4 EDO B 1 412 425 EDO EDO . 
FB 4 EDO B 1 413 426 EDO EDO . 
GB 4 EDO B 1 414 428 EDO EDO . 
HB 4 EDO B 1 415 429 EDO EDO . 
IB 4 EDO B 1 416 430 EDO EDO . 
JB 4 EDO B 1 417 431 EDO EDO . 
KB 4 EDO B 1 418 432 EDO EDO . 
LB 4 EDO B 1 419 433 EDO EDO . 
MB 4 EDO B 1 420 501 EDO EDO . 
NB 7 SO4 B 1 421 3 SO4 SO4 . 
OB 7 SO4 B 1 422 16 SO4 SO4 . 
PB 9 CL B 1 423 5 CL CL . 
QB 9 CL B 1 424 6 CL CL . 
RB 9 CL B 1 425 12 CL CL . 
SB 9 CL B 1 426 16 CL CL . 
TB 9 CL B 1 427 19 CL CL . 
UB 9 CL B 1 428 21 CL CL . 
VB 9 CL B 1 429 22 CL CL . 
WB 4 EDO C 1 501 416 EDO EDO . 
XB 4 EDO C 1 502 501 EDO EDO . 
YB 4 EDO C 1 503 502 EDO EDO . 
ZB 4 EDO C 1 504 503 EDO EDO . 
AC 7 SO4 C 1 505 18 SO4 SO4 . 
BC 9 CL C 1 506 13 CL CL . 
CC 9 CL C 1 507 14 CL CL . 
DC 9 CL D 1 501 7 CL CL . 
EC 11 HOH A 1 501 288 HOH HOH . 
EC 11 HOH A 2 502 123 HOH HOH . 
EC 11 HOH A 3 503 22 HOH HOH . 
EC 11 HOH A 4 504 182 HOH HOH . 
EC 11 HOH A 5 505 164 HOH HOH . 
EC 11 HOH A 6 506 255 HOH HOH . 
EC 11 HOH A 7 507 61 HOH HOH . 
EC 11 HOH A 8 508 170 HOH HOH . 
EC 11 HOH A 9 509 171 HOH HOH . 
EC 11 HOH A 10 510 106 HOH HOH . 
EC 11 HOH A 11 511 112 HOH HOH . 
EC 11 HOH A 12 512 29 HOH HOH . 
EC 11 HOH A 13 513 30 HOH HOH . 
EC 11 HOH A 14 514 260 HOH HOH . 
EC 11 HOH A 15 515 127 HOH HOH . 
EC 11 HOH A 16 516 185 HOH HOH . 
EC 11 HOH A 17 517 72 HOH HOH . 
EC 11 HOH A 18 518 259 HOH HOH . 
EC 11 HOH A 19 519 57 HOH HOH . 
EC 11 HOH A 20 520 269 HOH HOH . 
EC 11 HOH A 21 521 167 HOH HOH . 
EC 11 HOH A 22 522 78 HOH HOH . 
EC 11 HOH A 23 523 289 HOH HOH . 
EC 11 HOH A 24 524 277 HOH HOH . 
EC 11 HOH A 25 525 13 HOH HOH . 
EC 11 HOH A 26 526 217 HOH HOH . 
EC 11 HOH A 27 527 215 HOH HOH . 
EC 11 HOH A 28 528 94 HOH HOH . 
EC 11 HOH A 29 529 46 HOH HOH . 
EC 11 HOH A 30 530 10 HOH HOH . 
EC 11 HOH A 31 531 47 HOH HOH . 
EC 11 HOH A 32 532 190 HOH HOH . 
EC 11 HOH A 33 533 136 HOH HOH . 
EC 11 HOH A 34 534 53 HOH HOH . 
EC 11 HOH A 35 535 12 HOH HOH . 
EC 11 HOH A 36 536 45 HOH HOH . 
EC 11 HOH A 37 537 175 HOH HOH . 
EC 11 HOH A 38 538 179 HOH HOH . 
EC 11 HOH A 39 539 240 HOH HOH . 
EC 11 HOH A 40 540 114 HOH HOH . 
EC 11 HOH A 41 541 283 HOH HOH . 
EC 11 HOH A 42 542 84 HOH HOH . 
EC 11 HOH A 43 543 274 HOH HOH . 
EC 11 HOH A 44 544 130 HOH HOH . 
EC 11 HOH A 45 545 98 HOH HOH . 
EC 11 HOH A 46 546 267 HOH HOH . 
EC 11 HOH A 47 547 70 HOH HOH . 
EC 11 HOH A 48 548 157 HOH HOH . 
EC 11 HOH A 49 549 23 HOH HOH . 
EC 11 HOH A 50 550 139 HOH HOH . 
EC 11 HOH A 51 551 264 HOH HOH . 
EC 11 HOH A 52 552 181 HOH HOH . 
EC 11 HOH A 53 553 119 HOH HOH . 
EC 11 HOH A 54 554 109 HOH HOH . 
EC 11 HOH A 55 555 25 HOH HOH . 
EC 11 HOH A 56 556 102 HOH HOH . 
EC 11 HOH A 57 557 304 HOH HOH . 
EC 11 HOH A 58 558 279 HOH HOH . 
EC 11 HOH A 59 559 298 HOH HOH . 
EC 11 HOH A 60 560 40 HOH HOH . 
EC 11 HOH A 61 561 121 HOH HOH . 
EC 11 HOH A 62 562 138 HOH HOH . 
EC 11 HOH A 63 563 97 HOH HOH . 
EC 11 HOH A 64 564 226 HOH HOH . 
EC 11 HOH A 65 565 209 HOH HOH . 
EC 11 HOH A 66 566 120 HOH HOH . 
EC 11 HOH A 67 567 18 HOH HOH . 
EC 11 HOH A 68 568 302 HOH HOH . 
EC 11 HOH A 69 569 241 HOH HOH . 
EC 11 HOH A 70 570 247 HOH HOH . 
EC 11 HOH A 71 571 126 HOH HOH . 
EC 11 HOH A 72 572 142 HOH HOH . 
EC 11 HOH A 73 573 258 HOH HOH . 
EC 11 HOH A 74 574 198 HOH HOH . 
EC 11 HOH A 75 575 297 HOH HOH . 
EC 11 HOH A 76 576 95 HOH HOH . 
EC 11 HOH A 77 577 110 HOH HOH . 
EC 11 HOH A 78 578 225 HOH HOH . 
EC 11 HOH A 79 579 34 HOH HOH . 
EC 11 HOH A 80 580 301 HOH HOH . 
EC 11 HOH A 81 581 174 HOH HOH . 
EC 11 HOH A 82 582 234 HOH HOH . 
EC 11 HOH A 83 583 270 HOH HOH . 
EC 11 HOH A 84 584 49 HOH HOH . 
EC 11 HOH A 85 585 290 HOH HOH . 
EC 11 HOH A 86 586 230 HOH HOH . 
EC 11 HOH A 87 587 228 HOH HOH . 
EC 11 HOH A 88 588 244 HOH HOH . 
EC 11 HOH A 89 589 275 HOH HOH . 
EC 11 HOH A 90 590 303 HOH HOH . 
EC 11 HOH A 91 591 99 HOH HOH . 
EC 11 HOH A 92 592 223 HOH HOH . 
EC 11 HOH A 93 593 143 HOH HOH . 
EC 11 HOH A 94 594 216 HOH HOH . 
EC 11 HOH A 95 595 156 HOH HOH . 
EC 11 HOH A 96 596 227 HOH HOH . 
FC 11 HOH B 1 501 204 HOH HOH . 
FC 11 HOH B 2 502 141 HOH HOH . 
FC 11 HOH B 3 503 64 HOH HOH . 
FC 11 HOH B 4 504 166 HOH HOH . 
FC 11 HOH B 5 505 268 HOH HOH . 
FC 11 HOH B 6 506 257 HOH HOH . 
FC 11 HOH B 7 507 103 HOH HOH . 
FC 11 HOH B 8 508 27 HOH HOH . 
FC 11 HOH B 9 509 21 HOH HOH . 
FC 11 HOH B 10 510 71 HOH HOH . 
FC 11 HOH B 11 511 36 HOH HOH . 
FC 11 HOH B 12 512 281 HOH HOH . 
FC 11 HOH B 13 513 276 HOH HOH . 
FC 11 HOH B 14 514 184 HOH HOH . 
FC 11 HOH B 15 515 20 HOH HOH . 
FC 11 HOH B 16 516 299 HOH HOH . 
FC 11 HOH B 17 517 266 HOH HOH . 
FC 11 HOH B 18 518 210 HOH HOH . 
FC 11 HOH B 19 519 193 HOH HOH . 
FC 11 HOH B 20 520 221 HOH HOH . 
FC 11 HOH B 21 521 81 HOH HOH . 
FC 11 HOH B 22 522 77 HOH HOH . 
FC 11 HOH B 23 523 50 HOH HOH . 
FC 11 HOH B 24 524 38 HOH HOH . 
FC 11 HOH B 25 525 26 HOH HOH . 
FC 11 HOH B 26 526 177 HOH HOH . 
FC 11 HOH B 27 527 14 HOH HOH . 
FC 11 HOH B 28 528 73 HOH HOH . 
FC 11 HOH B 29 529 273 HOH HOH . 
FC 11 HOH B 30 530 31 HOH HOH . 
FC 11 HOH B 31 531 173 HOH HOH . 
FC 11 HOH B 32 532 79 HOH HOH . 
FC 11 HOH B 33 533 63 HOH HOH . 
FC 11 HOH B 34 534 214 HOH HOH . 
FC 11 HOH B 35 535 183 HOH HOH . 
FC 11 HOH B 36 536 92 HOH HOH . 
FC 11 HOH B 37 537 86 HOH HOH . 
FC 11 HOH B 38 538 24 HOH HOH . 
FC 11 HOH B 39 539 191 HOH HOH . 
FC 11 HOH B 40 540 39 HOH HOH . 
FC 11 HOH B 41 541 285 HOH HOH . 
FC 11 HOH B 42 542 250 HOH HOH . 
FC 11 HOH B 43 543 105 HOH HOH . 
FC 11 HOH B 44 544 176 HOH HOH . 
FC 11 HOH B 45 545 203 HOH HOH . 
FC 11 HOH B 46 546 295 HOH HOH . 
FC 11 HOH B 47 547 80 HOH HOH . 
FC 11 HOH B 48 548 87 HOH HOH . 
FC 11 HOH B 49 549 201 HOH HOH . 
FC 11 HOH B 50 550 208 HOH HOH . 
FC 11 HOH B 51 551 196 HOH HOH . 
GC 11 HOH C 1 601 271 HOH HOH . 
GC 11 HOH C 2 602 169 HOH HOH . 
GC 11 HOH C 3 603 280 HOH HOH . 
GC 11 HOH C 4 604 296 HOH HOH . 
GC 11 HOH C 5 605 205 HOH HOH . 
GC 11 HOH C 6 606 96 HOH HOH . 
GC 11 HOH C 7 607 93 HOH HOH . 
GC 11 HOH C 8 608 286 HOH HOH . 
GC 11 HOH C 9 609 189 HOH HOH . 
GC 11 HOH C 10 610 233 HOH HOH . 
HC 11 HOH D 1 601 251 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . P 5 -89.336 9.694 -27.701 1 104.38 ? N NO3 412 A 1 
HETATM 2 O O1 NO3 . . . P 5 -89.732 10.873 -27.449 1 95.23 ? O1 NO3 412 A 1 
HETATM 3 O O2 NO3 . . . P 5 -89.892 9.052 -28.65 1 98.6 ? O2 NO3 412 A 1 
HETATM 4 O O3 NO3 . . . P 5 -88.4 9.169 -27.009 1 80.99 ? O3 NO3 412 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#