data_8VMM # _model_server_result.job_id aBGEYSAw6eORH5NZZbrLfQ _model_server_result.datetime_utc '2025-03-04 12:20:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8VMM # _exptl.entry_id 8VMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VMM _cell.length_a 66.35 _cell.length_b 74.33 _cell.length_c 78.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 124 n n C1 C2 BOG sing 125 n n C1 O5 BOG sing 126 n n C1 H1 BOG sing 127 n n O1 C1' BOG sing 128 n n C2 O2 BOG sing 129 n n C2 C3 BOG sing 130 n n C2 H2 BOG sing 131 n n O2 HO2 BOG sing 132 n n C3 O3 BOG sing 133 n n C3 C4 BOG sing 134 n n C3 H3 BOG sing 135 n n O3 HO3 BOG sing 136 n n C4 O4 BOG sing 137 n n C4 C5 BOG sing 138 n n C4 H4 BOG sing 139 n n O4 HO4 BOG sing 140 n n C5 O5 BOG sing 141 n n C5 C6 BOG sing 142 n n C5 H5 BOG sing 143 n n C6 O6 BOG sing 144 n n C6 H61 BOG sing 145 n n C6 H62 BOG sing 146 n n O6 HO6 BOG sing 147 n n C1' C2' BOG sing 148 n n C1' "H1'1" BOG sing 149 n n C1' "H1'2" BOG sing 150 n n C2' C3' BOG sing 151 n n C2' "H2'1" BOG sing 152 n n C2' "H2'2" BOG sing 153 n n C3' C4' BOG sing 154 n n C3' "H3'1" BOG sing 155 n n C3' "H3'2" BOG sing 156 n n C4' C5' BOG sing 157 n n C4' "H4'1" BOG sing 158 n n C4' "H4'2" BOG sing 159 n n C5' C6' BOG sing 160 n n C5' "H5'1" BOG sing 161 n n C5' "H5'2" BOG sing 162 n n C6' C7' BOG sing 163 n n C6' "H6'1" BOG sing 164 n n C6' "H6'2" BOG sing 165 n n C7' C8' BOG sing 166 n n C7' "H7'1" BOG sing 167 n n C7' "H7'2" BOG sing 168 n n C8' "H8'1" BOG sing 169 n n C8' "H8'2" BOG sing 170 n n C8' "H8'3" BOG sing 171 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8VMM _atom_sites.fract_transf_matrix[1][1] 0.015072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 601 601 BOG BOG . C 3 A1ACP A 1 602 701 A1ACP 23M . D 2 BOG A 1 603 801 BOG BOG . E 4 HOH A 1 701 42 HOH HOH . E 4 HOH A 2 702 36 HOH HOH . E 4 HOH A 3 703 100 HOH HOH . E 4 HOH A 4 704 88 HOH HOH . E 4 HOH A 5 705 102 HOH HOH . E 4 HOH A 6 706 99 HOH HOH . E 4 HOH A 7 707 48 HOH HOH . E 4 HOH A 8 708 7 HOH HOH . E 4 HOH A 9 709 14 HOH HOH . E 4 HOH A 10 710 80 HOH HOH . E 4 HOH A 11 711 45 HOH HOH . E 4 HOH A 12 712 46 HOH HOH . E 4 HOH A 13 713 41 HOH HOH . E 4 HOH A 14 714 17 HOH HOH . E 4 HOH A 15 715 40 HOH HOH . E 4 HOH A 16 716 93 HOH HOH . E 4 HOH A 17 717 103 HOH HOH . E 4 HOH A 18 718 35 HOH HOH . E 4 HOH A 19 719 6 HOH HOH . E 4 HOH A 20 720 64 HOH HOH . E 4 HOH A 21 721 4 HOH HOH . E 4 HOH A 22 722 52 HOH HOH . E 4 HOH A 23 723 29 HOH HOH . E 4 HOH A 24 724 37 HOH HOH . E 4 HOH A 25 725 19 HOH HOH . E 4 HOH A 26 726 67 HOH HOH . E 4 HOH A 27 727 26 HOH HOH . E 4 HOH A 28 728 1 HOH HOH . E 4 HOH A 29 729 23 HOH HOH . E 4 HOH A 30 730 79 HOH HOH . E 4 HOH A 31 731 2 HOH HOH . E 4 HOH A 32 732 70 HOH HOH . E 4 HOH A 33 733 56 HOH HOH . E 4 HOH A 34 734 86 HOH HOH . E 4 HOH A 35 735 49 HOH HOH . E 4 HOH A 36 736 33 HOH HOH . E 4 HOH A 37 737 12 HOH HOH . E 4 HOH A 38 738 15 HOH HOH . E 4 HOH A 39 739 20 HOH HOH . E 4 HOH A 40 740 39 HOH HOH . E 4 HOH A 41 741 34 HOH HOH . E 4 HOH A 42 742 3 HOH HOH . E 4 HOH A 43 743 81 HOH HOH . E 4 HOH A 44 744 44 HOH HOH . E 4 HOH A 45 745 16 HOH HOH . E 4 HOH A 46 746 66 HOH HOH . E 4 HOH A 47 747 92 HOH HOH . E 4 HOH A 48 748 32 HOH HOH . E 4 HOH A 49 749 13 HOH HOH . E 4 HOH A 50 750 31 HOH HOH . E 4 HOH A 51 751 5 HOH HOH . E 4 HOH A 52 752 10 HOH HOH . E 4 HOH A 53 753 53 HOH HOH . E 4 HOH A 54 754 38 HOH HOH . E 4 HOH A 55 755 69 HOH HOH . E 4 HOH A 56 756 11 HOH HOH . E 4 HOH A 57 757 60 HOH HOH . E 4 HOH A 58 758 58 HOH HOH . E 4 HOH A 59 759 9 HOH HOH . E 4 HOH A 60 760 97 HOH HOH . E 4 HOH A 61 761 85 HOH HOH . E 4 HOH A 62 762 8 HOH HOH . E 4 HOH A 63 763 51 HOH HOH . E 4 HOH A 64 764 62 HOH HOH . E 4 HOH A 65 765 63 HOH HOH . E 4 HOH A 66 766 78 HOH HOH . E 4 HOH A 67 767 24 HOH HOH . E 4 HOH A 68 768 54 HOH HOH . E 4 HOH A 69 769 30 HOH HOH . E 4 HOH A 70 770 50 HOH HOH . E 4 HOH A 71 771 59 HOH HOH . E 4 HOH A 72 772 98 HOH HOH . E 4 HOH A 73 773 94 HOH HOH . E 4 HOH A 74 774 84 HOH HOH . E 4 HOH A 75 775 71 HOH HOH . E 4 HOH A 76 776 96 HOH HOH . E 4 HOH A 77 777 27 HOH HOH . E 4 HOH A 78 778 74 HOH HOH . E 4 HOH A 79 779 83 HOH HOH . E 4 HOH A 80 780 18 HOH HOH . E 4 HOH A 81 781 101 HOH HOH . E 4 HOH A 82 782 47 HOH HOH . E 4 HOH A 83 783 57 HOH HOH . E 4 HOH A 84 784 25 HOH HOH . E 4 HOH A 85 785 68 HOH HOH . E 4 HOH A 86 786 28 HOH HOH . E 4 HOH A 87 787 95 HOH HOH . E 4 HOH A 88 788 89 HOH HOH . E 4 HOH A 89 789 75 HOH HOH . E 4 HOH A 90 790 76 HOH HOH . E 4 HOH A 91 791 55 HOH HOH . E 4 HOH A 92 792 65 HOH HOH . E 4 HOH A 93 793 22 HOH HOH . E 4 HOH A 94 794 77 HOH HOH . E 4 HOH A 95 795 73 HOH HOH . E 4 HOH A 96 796 61 HOH HOH . E 4 HOH A 97 797 72 HOH HOH . E 4 HOH A 98 798 90 HOH HOH . E 4 HOH A 99 799 21 HOH HOH . E 4 HOH A 100 800 82 HOH HOH . E 4 HOH A 101 801 87 HOH HOH . E 4 HOH A 102 802 91 HOH HOH . E 4 HOH A 103 803 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 24.237 -11.631 -8.007 1 45.1 ? C1 BOG 601 A 1 HETATM 2 O O1 BOG . . . B 2 24.632 -10.983 -9.179 1 34.71 ? O1 BOG 601 A 1 HETATM 3 C C2 BOG . . . B 2 24.952 -11.011 -6.809 1 44.61 ? C2 BOG 601 A 1 HETATM 4 O O2 BOG . . . B 2 26.337 -11.054 -6.988 1 51.37 ? O2 BOG 601 A 1 HETATM 5 C C3 BOG . . . B 2 24.565 -11.806 -5.564 1 42.86 ? C3 BOG 601 A 1 HETATM 6 O O3 BOG . . . B 2 25.091 -11.187 -4.425 1 42.47 ? O3 BOG 601 A 1 HETATM 7 C C4 BOG . . . B 2 23.043 -11.86 -5.462 1 45.24 ? C4 BOG 601 A 1 HETATM 8 O O4 BOG . . . B 2 22.676 -12.756 -4.446 1 52.28 ? O4 BOG 601 A 1 HETATM 9 C C5 BOG . . . B 2 22.418 -12.311 -6.784 1 48.26 ? C5 BOG 601 A 1 HETATM 10 O O5 BOG . . . B 2 22.852 -11.498 -7.837 1 45.65 ? O5 BOG 601 A 1 HETATM 11 C C6 BOG . . . B 2 20.898 -12.211 -6.637 1 44.73 ? C6 BOG 601 A 1 HETATM 12 O O6 BOG . . . B 2 20.28 -12.281 -7.892 1 54.77 ? O6 BOG 601 A 1 HETATM 13 C C1' BOG . . . B 2 24.217 -11.639 -10.344 1 39.96 ? C1' BOG 601 A 1 HETATM 14 C C2' BOG . . . B 2 25.397 -12.38 -10.967 1 37.59 ? C2' BOG 601 A 1 HETATM 15 C C3' BOG . . . B 2 25.006 -12.89 -12.352 1 44.87 ? C3' BOG 601 A 1 HETATM 16 C C4' BOG . . . B 2 26.22 -13.545 -13.011 1 44.59 ? C4' BOG 601 A 1 HETATM 17 C C5' BOG . . . B 2 25.771 -14.358 -14.223 1 50.79 ? C5' BOG 601 A 1 HETATM 18 C C6' BOG . . . B 2 26.999 -14.875 -14.969 1 47.46 ? C6' BOG 601 A 1 HETATM 19 C C7' BOG . . . B 2 26.676 -15.021 -16.454 1 51.46 ? C7' BOG 601 A 1 HETATM 20 C C8' BOG . . . B 2 25.826 -16.269 -16.677 1 47.14 ? C8' BOG 601 A 1 HETATM 21 H H1 BOG . . . B 2 24.467 -12.571 -8.072 1 54.15 ? H1 BOG 601 A 1 HETATM 22 H H2 BOG . . . B 2 24.691 -10.081 -6.714 1 53.56 ? H2 BOG 601 A 1 HETATM 23 H HO2 BOG . . . B 2 26.703 -11.246 -6.247 1 61.67 ? HO2 BOG 601 A 1 HETATM 24 H H3 BOG . . . B 2 24.922 -12.705 -5.628 1 51.46 ? H3 BOG 601 A 1 HETATM 25 H HO3 BOG . . . B 2 25.682 -10.627 -4.664 1 50.99 ? HO3 BOG 601 A 1 HETATM 26 H H4 BOG . . . B 2 22.718 -10.969 -5.257 1 54.32 ? H4 BOG 601 A 1 HETATM 27 H HO4 BOG . . . B 2 23.368 -13.004 -4.017 1 62.76 ? HO4 BOG 601 A 1 HETATM 28 H H5 BOG . . . B 2 22.684 -13.222 -6.985 1 57.95 ? H5 BOG 601 A 1 HETATM 29 H H61 BOG . . . B 2 20.673 -11.367 -6.216 1 53.71 ? H61 BOG 601 A 1 HETATM 30 H H62 BOG . . . B 2 20.582 -12.943 -6.084 1 53.71 ? H62 BOG 601 A 1 HETATM 31 H HO6 BOG . . . B 2 19.878 -13.027 -7.967 1 65.76 ? HO6 BOG 601 A 1 HETATM 32 H "H1'1" BOG . . . B 2 23.876 -10.987 -10.976 1 47.98 ? "H1'1" BOG 601 A 1 HETATM 33 H "H1'2" BOG . . . B 2 23.518 -12.273 -10.124 1 47.98 ? "H1'2" BOG 601 A 1 HETATM 34 H "H2'1" BOG . . . B 2 25.641 -13.131 -10.403 1 45.14 ? "H2'1" BOG 601 A 1 HETATM 35 H "H2'2" BOG . . . B 2 26.152 -11.776 -11.046 1 45.14 ? "H2'2" BOG 601 A 1 HETATM 36 H "H3'1" BOG . . . B 2 24.293 -13.542 -12.268 1 53.88 ? "H3'1" BOG 601 A 1 HETATM 37 H "H3'2" BOG . . . B 2 24.703 -12.148 -12.898 1 53.88 ? "H3'2" BOG 601 A 1 HETATM 38 H "H4'1" BOG . . . B 2 26.656 -14.131 -12.373 1 53.54 ? "H4'1" BOG 601 A 1 HETATM 39 H "H4'2" BOG . . . B 2 26.842 -12.857 -13.296 1 53.54 ? "H4'2" BOG 601 A 1 HETATM 40 H "H5'1" BOG . . . B 2 25.246 -13.795 -14.814 1 60.97 ? "H5'1" BOG 601 A 1 HETATM 41 H "H5'2" BOG . . . B 2 25.231 -15.108 -13.928 1 60.97 ? "H5'2" BOG 601 A 1 HETATM 42 H "H6'1" BOG . . . B 2 27.255 -15.738 -14.608 1 56.99 ? "H6'1" BOG 601 A 1 HETATM 43 H "H6'2" BOG . . . B 2 27.731 -14.248 -14.858 1 56.99 ? "H6'2" BOG 601 A 1 HETATM 44 H "H7'1" BOG . . . B 2 27.502 -15.1 -16.958 1 61.79 ? "H7'1" BOG 601 A 1 HETATM 45 H "H7'2" BOG . . . B 2 26.187 -14.24 -16.756 1 61.79 ? "H7'2" BOG 601 A 1 HETATM 46 H "H8'1" BOG . . . B 2 25.537 -16.303 -17.602 1 56.6 ? "H8'1" BOG 601 A 1 HETATM 47 H "H8'2" BOG . . . B 2 26.351 -17.059 -16.473 1 56.6 ? "H8'2" BOG 601 A 1 HETATM 48 H "H8'3" BOG . . . B 2 25.049 -16.239 -16.096 1 56.6 ? "H8'3" BOG 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #