data_8VMM
#
_model_server_result.job_id            JsG00N5qJLpB2CRzUC98Zg 
_model_server_result.datetime_utc      '2025-03-04 12:15:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    8VMM 
#
_exptl.entry_id    8VMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VMM 
_cell.length_a            66.35 
_cell.length_b            74.33 
_cell.length_c            78.71 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 124 n n 
C1 C2 BOG sing 125 n n 
C1 O5 BOG sing 126 n n 
C1 H1 BOG sing 127 n n 
O1 C1' BOG sing 128 n n 
C2 O2 BOG sing 129 n n 
C2 C3 BOG sing 130 n n 
C2 H2 BOG sing 131 n n 
O2 HO2 BOG sing 132 n n 
C3 O3 BOG sing 133 n n 
C3 C4 BOG sing 134 n n 
C3 H3 BOG sing 135 n n 
O3 HO3 BOG sing 136 n n 
C4 O4 BOG sing 137 n n 
C4 C5 BOG sing 138 n n 
C4 H4 BOG sing 139 n n 
O4 HO4 BOG sing 140 n n 
C5 O5 BOG sing 141 n n 
C5 C6 BOG sing 142 n n 
C5 H5 BOG sing 143 n n 
C6 O6 BOG sing 144 n n 
C6 H61 BOG sing 145 n n 
C6 H62 BOG sing 146 n n 
O6 HO6 BOG sing 147 n n 
C1' C2' BOG sing 148 n n 
C1' "H1'1" BOG sing 149 n n 
C1' "H1'2" BOG sing 150 n n 
C2' C3' BOG sing 151 n n 
C2' "H2'1" BOG sing 152 n n 
C2' "H2'2" BOG sing 153 n n 
C3' C4' BOG sing 154 n n 
C3' "H3'1" BOG sing 155 n n 
C3' "H3'2" BOG sing 156 n n 
C4' C5' BOG sing 157 n n 
C4' "H4'1" BOG sing 158 n n 
C4' "H4'2" BOG sing 159 n n 
C5' C6' BOG sing 160 n n 
C5' "H5'1" BOG sing 161 n n 
C5' "H5'2" BOG sing 162 n n 
C6' C7' BOG sing 163 n n 
C6' "H6'1" BOG sing 164 n n 
C6' "H6'2" BOG sing 165 n n 
C7' C8' BOG sing 166 n n 
C7' "H7'1" BOG sing 167 n n 
C7' "H7'2" BOG sing 168 n n 
C8' "H8'1" BOG sing 169 n n 
C8' "H8'2" BOG sing 170 n n 
C8' "H8'3" BOG sing 171 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     8VMM 
_atom_sites.fract_transf_matrix[1][1]    0.015072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012705 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 601 601 BOG BOG . 
C 3 A1ACP A 1 602 701 A1ACP 23M . 
D 2 BOG A 1 603 801 BOG BOG . 
E 4 HOH A 1 701 42 HOH HOH . 
E 4 HOH A 2 702 36 HOH HOH . 
E 4 HOH A 3 703 100 HOH HOH . 
E 4 HOH A 4 704 88 HOH HOH . 
E 4 HOH A 5 705 102 HOH HOH . 
E 4 HOH A 6 706 99 HOH HOH . 
E 4 HOH A 7 707 48 HOH HOH . 
E 4 HOH A 8 708 7 HOH HOH . 
E 4 HOH A 9 709 14 HOH HOH . 
E 4 HOH A 10 710 80 HOH HOH . 
E 4 HOH A 11 711 45 HOH HOH . 
E 4 HOH A 12 712 46 HOH HOH . 
E 4 HOH A 13 713 41 HOH HOH . 
E 4 HOH A 14 714 17 HOH HOH . 
E 4 HOH A 15 715 40 HOH HOH . 
E 4 HOH A 16 716 93 HOH HOH . 
E 4 HOH A 17 717 103 HOH HOH . 
E 4 HOH A 18 718 35 HOH HOH . 
E 4 HOH A 19 719 6 HOH HOH . 
E 4 HOH A 20 720 64 HOH HOH . 
E 4 HOH A 21 721 4 HOH HOH . 
E 4 HOH A 22 722 52 HOH HOH . 
E 4 HOH A 23 723 29 HOH HOH . 
E 4 HOH A 24 724 37 HOH HOH . 
E 4 HOH A 25 725 19 HOH HOH . 
E 4 HOH A 26 726 67 HOH HOH . 
E 4 HOH A 27 727 26 HOH HOH . 
E 4 HOH A 28 728 1 HOH HOH . 
E 4 HOH A 29 729 23 HOH HOH . 
E 4 HOH A 30 730 79 HOH HOH . 
E 4 HOH A 31 731 2 HOH HOH . 
E 4 HOH A 32 732 70 HOH HOH . 
E 4 HOH A 33 733 56 HOH HOH . 
E 4 HOH A 34 734 86 HOH HOH . 
E 4 HOH A 35 735 49 HOH HOH . 
E 4 HOH A 36 736 33 HOH HOH . 
E 4 HOH A 37 737 12 HOH HOH . 
E 4 HOH A 38 738 15 HOH HOH . 
E 4 HOH A 39 739 20 HOH HOH . 
E 4 HOH A 40 740 39 HOH HOH . 
E 4 HOH A 41 741 34 HOH HOH . 
E 4 HOH A 42 742 3 HOH HOH . 
E 4 HOH A 43 743 81 HOH HOH . 
E 4 HOH A 44 744 44 HOH HOH . 
E 4 HOH A 45 745 16 HOH HOH . 
E 4 HOH A 46 746 66 HOH HOH . 
E 4 HOH A 47 747 92 HOH HOH . 
E 4 HOH A 48 748 32 HOH HOH . 
E 4 HOH A 49 749 13 HOH HOH . 
E 4 HOH A 50 750 31 HOH HOH . 
E 4 HOH A 51 751 5 HOH HOH . 
E 4 HOH A 52 752 10 HOH HOH . 
E 4 HOH A 53 753 53 HOH HOH . 
E 4 HOH A 54 754 38 HOH HOH . 
E 4 HOH A 55 755 69 HOH HOH . 
E 4 HOH A 56 756 11 HOH HOH . 
E 4 HOH A 57 757 60 HOH HOH . 
E 4 HOH A 58 758 58 HOH HOH . 
E 4 HOH A 59 759 9 HOH HOH . 
E 4 HOH A 60 760 97 HOH HOH . 
E 4 HOH A 61 761 85 HOH HOH . 
E 4 HOH A 62 762 8 HOH HOH . 
E 4 HOH A 63 763 51 HOH HOH . 
E 4 HOH A 64 764 62 HOH HOH . 
E 4 HOH A 65 765 63 HOH HOH . 
E 4 HOH A 66 766 78 HOH HOH . 
E 4 HOH A 67 767 24 HOH HOH . 
E 4 HOH A 68 768 54 HOH HOH . 
E 4 HOH A 69 769 30 HOH HOH . 
E 4 HOH A 70 770 50 HOH HOH . 
E 4 HOH A 71 771 59 HOH HOH . 
E 4 HOH A 72 772 98 HOH HOH . 
E 4 HOH A 73 773 94 HOH HOH . 
E 4 HOH A 74 774 84 HOH HOH . 
E 4 HOH A 75 775 71 HOH HOH . 
E 4 HOH A 76 776 96 HOH HOH . 
E 4 HOH A 77 777 27 HOH HOH . 
E 4 HOH A 78 778 74 HOH HOH . 
E 4 HOH A 79 779 83 HOH HOH . 
E 4 HOH A 80 780 18 HOH HOH . 
E 4 HOH A 81 781 101 HOH HOH . 
E 4 HOH A 82 782 47 HOH HOH . 
E 4 HOH A 83 783 57 HOH HOH . 
E 4 HOH A 84 784 25 HOH HOH . 
E 4 HOH A 85 785 68 HOH HOH . 
E 4 HOH A 86 786 28 HOH HOH . 
E 4 HOH A 87 787 95 HOH HOH . 
E 4 HOH A 88 788 89 HOH HOH . 
E 4 HOH A 89 789 75 HOH HOH . 
E 4 HOH A 90 790 76 HOH HOH . 
E 4 HOH A 91 791 55 HOH HOH . 
E 4 HOH A 92 792 65 HOH HOH . 
E 4 HOH A 93 793 22 HOH HOH . 
E 4 HOH A 94 794 77 HOH HOH . 
E 4 HOH A 95 795 73 HOH HOH . 
E 4 HOH A 96 796 61 HOH HOH . 
E 4 HOH A 97 797 72 HOH HOH . 
E 4 HOH A 98 798 90 HOH HOH . 
E 4 HOH A 99 799 21 HOH HOH . 
E 4 HOH A 100 800 82 HOH HOH . 
E 4 HOH A 101 801 87 HOH HOH . 
E 4 HOH A 102 802 91 HOH HOH . 
E 4 HOH A 103 803 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . D 2 4.665 -9.327 -12.514 1 62.58 ? C1 BOG 603 A 1 
HETATM 2 O O1 BOG . . . D 2 5.434 -8.176 -12.741 1 62.51 ? O1 BOG 603 A 1 
HETATM 3 C C2 BOG . . . D 2 5.23 -10.479 -13.343 1 65.36 ? C2 BOG 603 A 1 
HETATM 4 O O2 BOG . . . D 2 4.237 -11.469 -13.426 1 70.96 ? O2 BOG 603 A 1 
HETATM 5 C C3 BOG . . . D 2 6.497 -11.086 -12.763 1 71.95 ? C3 BOG 603 A 1 
HETATM 6 O O3 BOG . . . D 2 7.499 -11.055 -13.74 1 68.65 ? O3 BOG 603 A 1 
HETATM 7 C C4 BOG . . . D 2 6.933 -10.285 -11.555 1 71.39 ? C4 BOG 603 A 1 
HETATM 8 O O4 BOG . . . D 2 7.987 -10.958 -10.929 1 70.42 ? O4 BOG 603 A 1 
HETATM 9 C C5 BOG . . . D 2 5.749 -10.212 -10.602 1 80.42 ? C5 BOG 603 A 1 
HETATM 10 O O5 BOG . . . D 2 4.623 -9.582 -11.141 1 84.79 ? O5 BOG 603 A 1 
HETATM 11 C C6 BOG . . . D 2 6.186 -9.429 -9.358 1 71.24 ? C6 BOG 603 A 1 
HETATM 12 O O6 BOG . . . D 2 7.58 -9.51 -9.198 1 69.14 ? O6 BOG 603 A 1 
HETATM 13 C C1' BOG . . . D 2 4.756 -7.085 -13.295 1 47.46 ? C1' BOG 603 A 1 
HETATM 14 C C2' BOG . . . D 2 3.798 -6.488 -12.265 1 56.43 ? C2' BOG 603 A 1 
HETATM 15 C C3' BOG . . . D 2 4.562 -6.025 -11.025 1 45.51 ? C3' BOG 603 A 1 
HETATM 16 C C4' BOG . . . D 2 5.366 -4.769 -11.353 1 44 ? C4' BOG 603 A 1 
HETATM 17 C C5' BOG . . . D 2 4.751 -3.552 -10.663 1 33.07 ? C5' BOG 603 A 1 
HETATM 18 C C6' BOG . . . D 2 4.694 -2.389 -11.653 1 31.32 ? C6' BOG 603 A 1 
HETATM 19 C C7' BOG . . . D 2 4.476 -1.079 -10.898 1 30.97 ? C7' BOG 603 A 1 
HETATM 20 C C8' BOG . . . D 2 3.683 -0.108 -11.77 1 30.3 ? C8' BOG 603 A 1 
HETATM 21 H H1 BOG . . . D 2 3.746 -9.208 -12.801 1 75.13 ? H1 BOG 603 A 1 
HETATM 22 H H2 BOG . . . D 2 5.475 -10.126 -14.213 1 78.46 ? H2 BOG 603 A 1 
HETATM 23 H HO2 BOG . . . D 2 3.576 -11.268 -12.922 1 85.19 ? HO2 BOG 603 A 1 
HETATM 24 H H3 BOG . . . D 2 6.333 -12.003 -12.493 1 86.37 ? H3 BOG 603 A 1 
HETATM 25 H HO3 BOG . . . D 2 7.543 -10.278 -14.084 1 82.42 ? HO3 BOG 603 A 1 
HETATM 26 H H4 BOG . . . D 2 7.221 -9.395 -11.809 1 85.7 ? H4 BOG 603 A 1 
HETATM 27 H HO4 BOG . . . D 2 8.07 -11.736 -11.263 1 84.53 ? HO4 BOG 603 A 1 
HETATM 28 H H5 BOG . . . D 2 5.492 -11.125 -10.402 1 96.54 ? H5 BOG 603 A 1 
HETATM 29 H H61 BOG . . . D 2 5.751 -9.804 -8.575 1 85.52 ? H61 BOG 603 A 1 
HETATM 30 H H62 BOG . . . D 2 5.928 -8.5 -9.457 1 85.52 ? H62 BOG 603 A 1 
HETATM 31 H HO6 BOG . . . D 2 7.915 -8.731 -9.12 1 83 ? HO6 BOG 603 A 1 
HETATM 32 H "H1'1" BOG . . . D 2 4.252 -7.379 -14.069 1 56.98 ? "H1'1" BOG 603 A 1 
HETATM 33 H "H1'2" BOG . . . D 2 5.398 -6.41 -13.564 1 56.98 ? "H1'2" BOG 603 A 1 
HETATM 34 H "H2'1" BOG . . . D 2 3.149 -7.161 -12.006 1 67.75 ? "H2'1" BOG 603 A 1 
HETATM 35 H "H2'2" BOG . . . D 2 3.339 -5.73 -12.658 1 67.75 ? "H2'2" BOG 603 A 1 
HETATM 36 H "H3'1" BOG . . . D 2 3.932 -5.828 -10.314 1 54.65 ? "H3'1" BOG 603 A 1 
HETATM 37 H "H3'2" BOG . . . D 2 5.165 -6.728 -10.738 1 54.65 ? "H3'2" BOG 603 A 1 
HETATM 38 H "H4'1" BOG . . . D 2 5.364 -4.628 -12.312 1 52.83 ? "H4'1" BOG 603 A 1 
HETATM 39 H "H4'2" BOG . . . D 2 6.279 -4.884 -11.045 1 52.83 ? "H4'2" BOG 603 A 1 
HETATM 40 H "H5'1" BOG . . . D 2 5.295 -3.302 -9.9 1 39.72 ? "H5'1" BOG 603 A 1 
HETATM 41 H "H5'2" BOG . . . D 2 3.854 -3.768 -10.364 1 39.72 ? "H5'2" BOG 603 A 1 
HETATM 42 H "H6'1" BOG . . . D 2 5.529 -2.343 -12.144 1 37.61 ? "H6'1" BOG 603 A 1 
HETATM 43 H "H6'2" BOG . . . D 2 3.961 -2.529 -12.273 1 37.61 ? "H6'2" BOG 603 A 1 
HETATM 44 H "H7'1" BOG . . . D 2 5.336 -0.687 -10.678 1 37.19 ? "H7'1" BOG 603 A 1 
HETATM 45 H "H7'2" BOG . . . D 2 3.983 -1.256 -10.081 1 37.19 ? "H7'2" BOG 603 A 1 
HETATM 46 H "H8'1" BOG . . . D 2 2.809 0.041 -11.376 1 36.39 ? "H8'1" BOG 603 A 1 
HETATM 47 H "H8'2" BOG . . . D 2 4.159 0.736 -11.83 1 36.39 ? "H8'2" BOG 603 A 1 
HETATM 48 H "H8'3" BOG . . . D 2 3.577 -0.483 -12.658 1 36.39 ? "H8'3" BOG 603 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#