data_8VOG # _model_server_result.job_id Iab4qlvePzsDRsOoexukHA _model_server_result.datetime_utc '2024-10-12 19:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 8VOG # _exptl.entry_id 8VOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 95.87 _cell.angle_beta 97 _cell.angle_gamma 90.09 _cell.entry_id 8VOG _cell.length_a 10.24 _cell.length_b 15.76 _cell.length_c 31.197 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C1 Z7Z 1 A Z7Z 1 1_555 A N AIB 2 A AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale2 A C AIB 2 A AIB 2 1_555 A N ALA 3 A ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C ALA 3 A ALA 3 1_555 A N AIB 4 A AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C AIB 4 A AIB 4 1_555 A N LEU 5 A LEU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C LEU 5 A LEU 5 1_555 A N AIB 6 A AIB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C AIB 6 A AIB 6 1_555 A N ALA 7 A ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C ALA 7 A ALA 7 1_555 A N AIB 8 A AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C AIB 8 A AIB 8 1_555 A N LEU 9 A LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C LEU 9 A LEU 9 1_555 A N AIB 10 A AIB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C AIB 10 A AIB 10 1_555 A N GLN 11 A GLN 11 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C AIB 10 A AIB 10 1_555 A N GLN 11 A GLN 11 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? covale ? covale12 A C GLN 11 A GLN 11 1_555 A N AIB 12 A AIB 12 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C GLN 11 A GLN 11 1_555 A N AIB 12 A AIB 12 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C AIB 12 A AIB 12 1_555 A N LEU 13 A LEU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C LEU 13 A LEU 13 1_555 A N15 I77 14 A I77 14 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.425 ? covale ? covale16 A C LEU 13 A LEU 13 1_555 A N15 I77 14 A I77 14 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.429 ? covale ? covale17 B C1 Z7Z 1 B Z7Z 1 1_555 B N AIB 2 B AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale18 B C AIB 2 B AIB 2 1_555 B N ALA 3 B ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale19 B C ALA 3 B ALA 3 1_555 B N AIB 4 B AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 B C AIB 4 B AIB 4 1_555 B N LEU 5 B LEU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale21 B C LEU 5 B LEU 5 1_555 B N AIB 6 B AIB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale22 B C AIB 6 B AIB 6 1_555 B N ALA 7 B ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale23 B C ALA 7 B ALA 7 1_555 B N AIB 8 B AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale24 B C AIB 8 B AIB 8 1_555 B N LEU 9 B LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale25 B C LEU 9 B LEU 9 1_555 B N AIB 10 B AIB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 B C AIB 10 B AIB 10 1_555 B N GLN 11 B GLN 11 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.339 ? covale ? covale27 B C AIB 10 B AIB 10 1_555 B N GLN 11 B GLN 11 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale28 B C GLN 11 B GLN 11 1_555 B N AIB 12 B AIB 12 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 B C GLN 11 B GLN 11 1_555 B N AIB 12 B AIB 12 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale30 B C AIB 12 B AIB 12 1_555 B N LEU 13 B LEU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale31 B C LEU 13 B LEU 13 1_555 B N15 I77 14 B I77 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 28 n n C1 C2 CCN sing 29 n n C2 H21 CCN sing 30 n n C2 H22 CCN sing 31 n n C2 H23 CCN sing 32 n n # _atom_sites.entry_id 8VOG _atom_sites.fract_transf_matrix[1][1] 0.097656 _atom_sites.fract_transf_matrix[1][2] 0.000153 _atom_sites.fract_transf_matrix[1][3] 0.012071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.063452 _atom_sites.fract_transf_matrix[2][3] 0.006585 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CCN A 1 101 22 CCN CCN . D 2 CCN A 1 102 23 CCN CCN . E 2 CCN B 1 101 20 CCN CCN . F 2 CCN B 1 102 21 CCN CCN . G 3 HOH A 1 201 18 HOH HOH . G 3 HOH A 2 202 7 HOH HOH . G 3 HOH A 3 203 4 HOH HOH . G 3 HOH A 4 204 13 HOH HOH . G 3 HOH A 5 205 11 HOH HOH . G 3 HOH A 6 206 5 HOH HOH . G 3 HOH A 7 207 9 HOH HOH . G 3 HOH A 8 208 19 HOH HOH . G 3 HOH A 9 209 16 HOH HOH . H 3 HOH B 1 201 6 HOH HOH . H 3 HOH B 2 202 8 HOH HOH . H 3 HOH B 3 203 2 HOH HOH . H 3 HOH B 4 204 14 HOH HOH . H 3 HOH B 5 205 15 HOH HOH . H 3 HOH B 6 206 12 HOH HOH . H 3 HOH B 7 207 1 HOH HOH . H 3 HOH B 8 208 10 HOH HOH . H 3 HOH B 9 209 3 HOH HOH . H 3 HOH B 10 210 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . D 2 -5.916 5.498 20.406 1 22.14 ? N CCN 102 A 1 HETATM 2 C C1 CCN . . . D 2 -6.954 5.633 20.889 1 22.83 ? C1 CCN 102 A 1 HETATM 3 C C2 CCN . . . D 2 -8.251 5.813 21.516 1 23.22 ? C2 CCN 102 A 1 HETATM 4 H H21 CCN . . . D 2 -8.4 6.753 21.704 1 27.86 ? H21 CCN 102 A 1 HETATM 5 H H22 CCN . . . D 2 -8.951 5.495 20.925 1 27.86 ? H22 CCN 102 A 1 HETATM 6 H H23 CCN . . . D 2 -8.29 5.315 22.347 1 27.86 ? H23 CCN 102 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 6 #