data_8VOJ
#
_model_server_result.job_id            nQzHvO102ECEw0WwhCtm4Q 
_model_server_result.datetime_utc      '2024-12-27 09:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8voj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":503}' 
#
_entry.id    8VOJ 
#
_exptl.entry_id    8VOJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              453.542 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1r,4r)-N~1~-[(7P)-2-benzyl-7-(2-methyl-2H-tetrazol-5-yl)-9H-pyrimido[4,5-b]indol-4-yl]cyclohexane-1,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OD1 ASP 176 C ASP 176 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc2 C OD2 ASP 176 C ASP 176 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc3 C ND1 HIS 178 C HIS 178 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc4 C OD2 ASP 264 C ASP 264 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
#
_chem_comp.formula           'C25 H27 N9' 
_chem_comp.formula_weight    453.542 
_chem_comp.id                A1ACV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1r,4r)-N~1~-[(7P)-2-benzyl-7-(2-methyl-2H-tetrazol-5-yl)-9H-pyrimido[4,5-b]indol-4-yl]cyclohexane-1,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C26 A1ACV doub 1 n y 
C25 C24 A1ACV sing 2 n y 
C26 C27 A1ACV sing 3 n y 
C24 C23 A1ACV doub 4 n y 
C27 C28 A1ACV doub 5 n y 
N3 N4 A1ACV doub 6 n y 
N3 N2 A1ACV sing 7 n y 
N4 C5 A1ACV sing 8 n y 
C16 C15 A1ACV sing 9 n n 
C16 N17 A1ACV sing 10 n n 
C16 C18 A1ACV sing 11 n n 
N2 C1 A1ACV sing 12 n n 
N2 N34 A1ACV sing 13 n y 
C15 C14 A1ACV sing 14 n n 
C5 N34 A1ACV doub 15 n y 
C5 C6 A1ACV sing 16 n n 
C14 C13 A1ACV sing 17 n n 
C6 C33 A1ACV doub 18 n y 
C6 C7 A1ACV sing 19 n y 
C33 C32 A1ACV sing 20 n y 
C23 C28 A1ACV sing 21 n y 
C23 C22 A1ACV sing 22 n n 
C7 C8 A1ACV doub 23 n y 
C32 C9 A1ACV doub 24 n y 
C8 C9 A1ACV sing 25 n y 
C8 N31 A1ACV sing 26 n y 
C9 C10 A1ACV sing 27 n y 
N31 C30 A1ACV sing 28 n y 
C18 C19 A1ACV sing 29 n n 
C10 C30 A1ACV doub 30 n y 
C10 C11 A1ACV sing 31 n y 
C30 N29 A1ACV sing 32 n y 
N12 C11 A1ACV sing 33 n n 
N12 C13 A1ACV sing 34 n n 
C11 N20 A1ACV doub 35 n y 
N29 C21 A1ACV doub 36 n y 
C13 C19 A1ACV sing 37 n n 
N20 C21 A1ACV sing 38 n y 
C22 C21 A1ACV sing 39 n n 
C7 H1 A1ACV sing 40 n n 
N12 H2 A1ACV sing 41 n n 
C13 H3 A1ACV sing 42 n n 
C15 H4 A1ACV sing 43 n n 
C15 H5 A1ACV sing 44 n n 
C22 H6 A1ACV sing 45 n n 
C22 H7 A1ACV sing 46 n n 
C24 H8 A1ACV sing 47 n n 
C26 H9 A1ACV sing 48 n n 
C28 H10 A1ACV sing 49 n n 
C1 H11 A1ACV sing 50 n n 
C1 H12 A1ACV sing 51 n n 
C1 H13 A1ACV sing 52 n n 
C14 H14 A1ACV sing 53 n n 
C14 H15 A1ACV sing 54 n n 
C16 H16 A1ACV sing 55 n n 
C18 H17 A1ACV sing 56 n n 
C18 H18 A1ACV sing 57 n n 
C19 H19 A1ACV sing 58 n n 
C19 H20 A1ACV sing 59 n n 
C25 H21 A1ACV sing 60 n n 
C27 H22 A1ACV sing 61 n n 
C32 H23 A1ACV sing 62 n n 
C33 H24 A1ACV sing 63 n n 
N17 H25 A1ACV sing 64 n n 
N17 H26 A1ACV sing 65 n n 
N31 H28 A1ACV sing 66 n n 
#
_atom_sites.entry_id                     8VOJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 ZN C 1 501 600 ZN ZN . 
F 5 IHP C 1 502 701 IHP IHP . 
G 6 A1ACV C 1 503 1 A1ACV LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 A1ACV . . . G 6 164.954 208.582 154.039 1 56.35 ? N3 A1ACV 503 C 1 
HETATM 2 C C5 A1ACV . . . G 6 167.018 208.114 153.769 1 56.35 ? C5 A1ACV 503 C 1 
HETATM 3 C C6 A1ACV . . . G 6 168.25 207.331 153.584 1 56.35 ? C6 A1ACV 503 C 1 
HETATM 4 C C7 A1ACV . . . G 6 168.18 205.943 153.488 1 56.35 ? C7 A1ACV 503 C 1 
HETATM 5 C C8 A1ACV . . . G 6 169.361 205.223 153.335 1 56.35 ? C8 A1ACV 503 C 1 
HETATM 6 C C10 A1ACV . . . G 6 171.599 204.808 153.126 1 56.35 ? C10 A1ACV 503 C 1 
HETATM 7 N N12 A1ACV . . . G 6 173.843 205.659 153.064 1 56.35 ? N12 A1ACV 503 C 1 
HETATM 8 C C13 A1ACV . . . G 6 175.292 205.54 153 1 56.35 ? C13 A1ACV 503 C 1 
HETATM 9 C C15 A1ACV . . . G 6 177.193 205.977 154.593 1 56.35 ? C15 A1ACV 503 C 1 
HETATM 10 C C21 A1ACV . . . G 6 172.723 202.324 152.973 1 56.35 ? C21 A1ACV 503 C 1 
HETATM 11 C C22 A1ACV . . . G 6 173.346 200.985 152.94 1 56.35 ? C22 A1ACV 503 C 1 
HETATM 12 C C24 A1ACV . . . G 6 173.76 199.857 155.16 1 56.35 ? C24 A1ACV 503 C 1 
HETATM 13 C C26 A1ACV . . . G 6 175.831 200.101 156.339 1 56.35 ? C26 A1ACV 503 C 1 
HETATM 14 C C28 A1ACV . . . G 6 175.497 201.211 154.243 1 56.35 ? C28 A1ACV 503 C 1 
HETATM 15 C C1 A1ACV . . . G 6 165.154 210.986 154.342 1 56.35 ? C1 A1ACV 503 C 1 
HETATM 16 C C11 A1ACV . . . G 6 173.006 204.605 153.056 1 56.35 ? C11 A1ACV 503 C 1 
HETATM 17 C C14 A1ACV . . . G 6 175.862 205.263 154.382 1 56.35 ? C14 A1ACV 503 C 1 
HETATM 18 C C16 A1ACV . . . G 6 176.998 207.48 154.556 1 56.35 ? C16 A1ACV 503 C 1 
HETATM 19 C C18 A1ACV . . . G 6 176.03 207.901 153.467 1 56.35 ? C18 A1ACV 503 C 1 
HETATM 20 C C19 A1ACV . . . G 6 175.901 206.803 152.415 1 56.35 ? C19 A1ACV 503 C 1 
HETATM 21 C C23 A1ACV . . . G 6 174.217 200.682 154.142 1 56.35 ? C23 A1ACV 503 C 1 
HETATM 22 C C25 A1ACV . . . G 6 174.562 199.569 156.251 1 56.35 ? C25 A1ACV 503 C 1 
HETATM 23 C C27 A1ACV . . . G 6 176.297 200.922 155.335 1 56.35 ? C27 A1ACV 503 C 1 
HETATM 24 C C30 A1ACV . . . G 6 170.871 203.595 153.108 1 56.35 ? C30 A1ACV 503 C 1 
HETATM 25 C C32 A1ACV . . . G 6 170.664 207.252 153.372 1 56.35 ? C32 A1ACV 503 C 1 
HETATM 26 C C33 A1ACV . . . G 6 169.49 207.972 153.525 1 56.35 ? C33 A1ACV 503 C 1 
HETATM 27 C C9 A1ACV . . . G 6 170.615 205.87 153.275 1 56.35 ? C9 A1ACV 503 C 1 
HETATM 28 N N17 A1ACV . . . G 6 178.314 208.165 154.369 1 56.35 ? N17 A1ACV 503 C 1 
HETATM 29 N N2 A1ACV . . . G 6 165.703 209.658 154.096 1 56.35 ? N2 A1ACV 503 C 1 
HETATM 30 N N20 A1ACV . . . G 6 173.549 203.379 152.98 1 56.35 ? N20 A1ACV 503 C 1 
HETATM 31 N N29 A1ACV . . . G 6 171.388 202.367 153.03 1 56.35 ? N29 A1ACV 503 C 1 
HETATM 32 N N31 A1ACV . . . G 6 169.536 203.859 153.232 1 56.35 ? N31 A1ACV 503 C 1 
HETATM 33 N N34 A1ACV . . . G 6 167.001 209.432 153.934 1 56.35 ? N34 A1ACV 503 C 1 
HETATM 34 N N4 A1ACV . . . G 6 165.778 207.579 153.829 1 56.35 ? N4 A1ACV 503 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           553 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           34 
#