data_8VP3
#
_model_server_result.job_id            tnZz52-U2ctxncVGVGXnzg 
_model_server_result.datetime_utc      '2024-12-26 10:20:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":803}' 
#
_entry.id    8VP3 
#
_exptl.entry_id    8VP3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              480.639 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VP3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 549 A THR 526 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc2 E O3B ADP . A ADP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 C OG1 THR 549 B THR 526 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc4 C OE1 GLN 590 B GLN 567 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc5 H O3B ADP . B ADP 801 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C24 H51 N O6 P 1' 
_chem_comp.formula_weight    480.639 
_chem_comp.id                A1ACX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 N29 A1ACX sing 1 n n 
C32 N29 A1ACX sing 2 n n 
N29 C28 A1ACX sing 3 n n 
N29 C30 A1ACX sing 4 n n 
C28 C27 A1ACX sing 5 n n 
C27 O26 A1ACX sing 6 n n 
O26 P23 A1ACX sing 7 n n 
O25 P23 A1ACX doub 8 n n 
P23 O22 A1ACX sing 9 n n 
P23 O24 A1ACX sing 10 n n 
O22 C21 A1ACX sing 11 n n 
C20 C21 A1ACX sing 12 n n 
C20 C19 A1ACX sing 13 n n 
C19 O18 A1ACX sing 14 n n 
O18 C16 A1ACX sing 15 n n 
O17 C16 A1ACX doub 16 n n 
C16 C15 A1ACX sing 17 n n 
C15 C14 A1ACX sing 18 n n 
C14 C13 A1ACX sing 19 n n 
C13 C12 A1ACX sing 20 n n 
C12 C11 A1ACX sing 21 n n 
C11 C10 A1ACX sing 22 n n 
C10 C09 A1ACX sing 23 n n 
C09 C08 A1ACX sing 24 n n 
C08 C07 A1ACX sing 25 n n 
C07 C06 A1ACX sing 26 n n 
C06 C05 A1ACX sing 27 n n 
C05 C04 A1ACX sing 28 n n 
C03 C04 A1ACX sing 29 n n 
C03 C02 A1ACX sing 30 n n 
C01 C02 A1ACX sing 31 n n 
C10 H1 A1ACX sing 32 n n 
C10 H2 A1ACX sing 33 n n 
C01 H3 A1ACX sing 34 n n 
C01 H4 A1ACX sing 35 n n 
C01 H5 A1ACX sing 36 n n 
C02 H6 A1ACX sing 37 n n 
C02 H7 A1ACX sing 38 n n 
C03 H8 A1ACX sing 39 n n 
C03 H9 A1ACX sing 40 n n 
C04 H10 A1ACX sing 41 n n 
C04 H11 A1ACX sing 42 n n 
C05 H12 A1ACX sing 43 n n 
C05 H13 A1ACX sing 44 n n 
C06 H14 A1ACX sing 45 n n 
C06 H15 A1ACX sing 46 n n 
C07 H16 A1ACX sing 47 n n 
C07 H17 A1ACX sing 48 n n 
C08 H18 A1ACX sing 49 n n 
C08 H19 A1ACX sing 50 n n 
C09 H20 A1ACX sing 51 n n 
C09 H21 A1ACX sing 52 n n 
C11 H22 A1ACX sing 53 n n 
C11 H23 A1ACX sing 54 n n 
C12 H24 A1ACX sing 55 n n 
C12 H25 A1ACX sing 56 n n 
C13 H26 A1ACX sing 57 n n 
C13 H27 A1ACX sing 58 n n 
C14 H28 A1ACX sing 59 n n 
C14 H29 A1ACX sing 60 n n 
C15 H30 A1ACX sing 61 n n 
C15 H31 A1ACX sing 62 n n 
C19 H32 A1ACX sing 63 n n 
C19 H33 A1ACX sing 64 n n 
C20 H34 A1ACX sing 65 n n 
C20 H35 A1ACX sing 66 n n 
C21 H36 A1ACX sing 67 n n 
C21 H37 A1ACX sing 68 n n 
C27 H38 A1ACX sing 69 n n 
C27 H39 A1ACX sing 70 n n 
C28 H40 A1ACX sing 71 n n 
C28 H41 A1ACX sing 72 n n 
C30 H42 A1ACX sing 73 n n 
C30 H43 A1ACX sing 74 n n 
C30 H44 A1ACX sing 75 n n 
C31 H45 A1ACX sing 76 n n 
C31 H46 A1ACX sing 77 n n 
C31 H47 A1ACX sing 78 n n 
C32 H48 A1ACX sing 79 n n 
C32 H49 A1ACX sing 80 n n 
C32 H50 A1ACX sing 81 n n 
O24 H51 A1ACX sing 82 n n 
#
_atom_sites.entry_id                     8VP3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ADP A 1 801 801 ADP ADP . 
F 4 MG A 1 802 802 MG MG . 
G 5 A1ACX A 1 803 803 A1ACX FAA . 
H 3 ADP B 1 801 801 ADP ADP . 
I 4 MG B 1 802 802 MG MG . 
J 6 POV B 1 803 803 POV EPC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1ACX . . . G 5 125.868 131.663 144.174 1 80.19 ? C10 A1ACX 803 A 1 
HETATM 2 C C01 A1ACX . . . G 5 130.16 130.862 135.395 1 79.14 ? C01 A1ACX 803 A 1 
HETATM 3 C C02 A1ACX . . . G 5 129.992 131.264 136.858 1 81.99 ? C02 A1ACX 803 A 1 
HETATM 4 C C03 A1ACX . . . G 5 129.748 130.059 137.764 1 86.27 ? C03 A1ACX 803 A 1 
HETATM 5 C C04 A1ACX . . . G 5 129.477 130.463 139.211 1 85.7 ? C04 A1ACX 803 A 1 
HETATM 6 C C05 A1ACX . . . G 5 128.519 129.501 139.908 1 82.74 ? C05 A1ACX 803 A 1 
HETATM 7 C C06 A1ACX . . . G 5 128.025 130.061 141.237 1 83.22 ? C06 A1ACX 803 A 1 
HETATM 8 C C07 A1ACX . . . G 5 126.516 129.913 141.409 1 81.26 ? C07 A1ACX 803 A 1 
HETATM 9 C C08 A1ACX . . . G 5 125.867 131.262 141.697 1 83.14 ? C08 A1ACX 803 A 1 
HETATM 10 C C09 A1ACX . . . G 5 125.029 131.253 142.969 1 78.76 ? C09 A1ACX 803 A 1 
HETATM 11 C C11 A1ACX . . . G 5 125.558 133.078 144.65 1 77.82 ? C11 A1ACX 803 A 1 
HETATM 12 C C12 A1ACX . . . G 5 125.295 133.125 146.151 1 80.26 ? C12 A1ACX 803 A 1 
HETATM 13 C C13 A1ACX . . . G 5 126.449 133.759 146.921 1 82.97 ? C13 A1ACX 803 A 1 
HETATM 14 C C14 A1ACX . . . G 5 125.983 134.364 148.242 1 86.44 ? C14 A1ACX 803 A 1 
HETATM 15 C C15 A1ACX . . . G 5 126.261 133.448 149.431 1 85.95 ? C15 A1ACX 803 A 1 
HETATM 16 C C16 A1ACX . . . G 5 125.464 133.86 150.666 1 90.98 ? C16 A1ACX 803 A 1 
HETATM 17 C C19 A1ACX . . . G 5 123.507 133.33 151.841 1 85.2 ? C19 A1ACX 803 A 1 
HETATM 18 C C20 A1ACX . . . G 5 123.305 132.838 153.272 1 83.58 ? C20 A1ACX 803 A 1 
HETATM 19 C C21 A1ACX . . . G 5 123.941 133.773 154.297 1 83.07 ? C21 A1ACX 803 A 1 
HETATM 20 C C27 A1ACX . . . G 5 120.551 135.633 157.461 1 83.23 ? C27 A1ACX 803 A 1 
HETATM 21 C C28 A1ACX . . . G 5 121.586 135.138 158.473 1 85.52 ? C28 A1ACX 803 A 1 
HETATM 22 C C30 A1ACX . . . G 5 120.575 136.919 159.764 1 86.18 ? C30 A1ACX 803 A 1 
HETATM 23 C C31 A1ACX . . . G 5 122.902 136.524 159.871 1 87.49 ? C31 A1ACX 803 A 1 
HETATM 24 C C32 A1ACX . . . G 5 121.396 134.974 160.826 1 87.17 ? C32 A1ACX 803 A 1 
HETATM 25 N N29 A1ACX . . . G 5 121.604 135.893 159.721 1 93.63 ? N29 A1ACX 803 A 1 
HETATM 26 O O17 A1ACX . . . G 5 125.441 134.996 151 1 91.91 ? O17 A1ACX 803 A 1 
HETATM 27 O O18 A1ACX . . . G 5 124.766 132.903 151.407 1 94.51 ? O18 A1ACX 803 A 1 
HETATM 28 O O22 A1ACX . . . G 5 123.043 133.95 155.355 1 89.73 ? O22 A1ACX 803 A 1 
HETATM 29 O O24 A1ACX . . . G 5 121.509 135.419 153.886 1 91.34 ? O24 A1ACX 803 A 1 
HETATM 30 O O25 A1ACX . . . G 5 122.685 136.475 155.771 1 94.94 ? O25 A1ACX 803 A 1 
HETATM 31 O O26 A1ACX . . . G 5 120.699 134.905 156.275 1 87.57 ? O26 A1ACX 803 A 1 
HETATM 32 P P23 A1ACX . . . G 5 121.991 135.218 155.302 1 109.2 ? P23 A1ACX 803 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#