data_8VP5 # _model_server_result.job_id 3b6594nmCKh92sqpwwYGTQ _model_server_result.datetime_utc '2024-12-26 14:14:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 8VP5 # _exptl.entry_id 8VP5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 480.639 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VP5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 J N N # _chem_comp.formula 'C24 H51 N O6 P 1' _chem_comp.formula_weight 480.639 _chem_comp.id A1ACX _chem_comp.mon_nstd_flag . _chem_comp.name '3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 N29 A1ACX sing 1 n n C32 N29 A1ACX sing 2 n n N29 C28 A1ACX sing 3 n n N29 C30 A1ACX sing 4 n n C28 C27 A1ACX sing 5 n n C27 O26 A1ACX sing 6 n n O26 P23 A1ACX sing 7 n n O25 P23 A1ACX doub 8 n n P23 O22 A1ACX sing 9 n n P23 O24 A1ACX sing 10 n n O22 C21 A1ACX sing 11 n n C20 C21 A1ACX sing 12 n n C20 C19 A1ACX sing 13 n n C19 O18 A1ACX sing 14 n n O18 C16 A1ACX sing 15 n n O17 C16 A1ACX doub 16 n n C16 C15 A1ACX sing 17 n n C15 C14 A1ACX sing 18 n n C14 C13 A1ACX sing 19 n n C13 C12 A1ACX sing 20 n n C12 C11 A1ACX sing 21 n n C11 C10 A1ACX sing 22 n n C10 C09 A1ACX sing 23 n n C09 C08 A1ACX sing 24 n n C08 C07 A1ACX sing 25 n n C07 C06 A1ACX sing 26 n n C06 C05 A1ACX sing 27 n n C05 C04 A1ACX sing 28 n n C03 C04 A1ACX sing 29 n n C03 C02 A1ACX sing 30 n n C01 C02 A1ACX sing 31 n n C10 H1 A1ACX sing 32 n n C10 H2 A1ACX sing 33 n n C01 H3 A1ACX sing 34 n n C01 H4 A1ACX sing 35 n n C01 H5 A1ACX sing 36 n n C02 H6 A1ACX sing 37 n n C02 H7 A1ACX sing 38 n n C03 H8 A1ACX sing 39 n n C03 H9 A1ACX sing 40 n n C04 H10 A1ACX sing 41 n n C04 H11 A1ACX sing 42 n n C05 H12 A1ACX sing 43 n n C05 H13 A1ACX sing 44 n n C06 H14 A1ACX sing 45 n n C06 H15 A1ACX sing 46 n n C07 H16 A1ACX sing 47 n n C07 H17 A1ACX sing 48 n n C08 H18 A1ACX sing 49 n n C08 H19 A1ACX sing 50 n n C09 H20 A1ACX sing 51 n n C09 H21 A1ACX sing 52 n n C11 H22 A1ACX sing 53 n n C11 H23 A1ACX sing 54 n n C12 H24 A1ACX sing 55 n n C12 H25 A1ACX sing 56 n n C13 H26 A1ACX sing 57 n n C13 H27 A1ACX sing 58 n n C14 H28 A1ACX sing 59 n n C14 H29 A1ACX sing 60 n n C15 H30 A1ACX sing 61 n n C15 H31 A1ACX sing 62 n n C19 H32 A1ACX sing 63 n n C19 H33 A1ACX sing 64 n n C20 H34 A1ACX sing 65 n n C20 H35 A1ACX sing 66 n n C21 H36 A1ACX sing 67 n n C21 H37 A1ACX sing 68 n n C27 H38 A1ACX sing 69 n n C27 H39 A1ACX sing 70 n n C28 H40 A1ACX sing 71 n n C28 H41 A1ACX sing 72 n n C30 H42 A1ACX sing 73 n n C30 H43 A1ACX sing 74 n n C30 H44 A1ACX sing 75 n n C31 H45 A1ACX sing 76 n n C31 H46 A1ACX sing 77 n n C31 H47 A1ACX sing 78 n n C32 H48 A1ACX sing 79 n n C32 H49 A1ACX sing 80 n n C32 H50 A1ACX sing 81 n n O24 H51 A1ACX sing 82 n n # _atom_sites.entry_id 8VP5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 801 801 ADP ADP . F 4 A1ACX A 1 802 803 A1ACX FAA . G 4 A1ACX A 1 803 804 A1ACX FAA . H 4 A1ACX B 1 801 802 A1ACX FAA . I 3 ADP B 1 802 801 ADP ADP . J 4 A1ACX B 1 803 802 A1ACX FAA . K 5 POV B 1 804 803 POV EPC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1ACX . . . G 4 117.616 88.152 100.658 1 79.15 ? C10 A1ACX 803 A 1 HETATM 2 C C01 A1ACX . . . G 4 122.221 82.176 93.221 1 75.43 ? C01 A1ACX 803 A 1 HETATM 3 C C02 A1ACX . . . G 4 120.928 82.332 94.018 1 77.74 ? C02 A1ACX 803 A 1 HETATM 4 C C03 A1ACX . . . G 4 120.264 83.687 93.786 1 76.3 ? C03 A1ACX 803 A 1 HETATM 5 C C04 A1ACX . . . G 4 119.072 83.913 94.712 1 73.61 ? C04 A1ACX 803 A 1 HETATM 6 C C05 A1ACX . . . G 4 118.9 85.386 95.069 1 72.25 ? C05 A1ACX 803 A 1 HETATM 7 C C06 A1ACX . . . G 4 118.05 85.583 96.32 1 72.7 ? C06 A1ACX 803 A 1 HETATM 8 C C07 A1ACX . . . G 4 118.495 86.805 97.118 1 71.77 ? C07 A1ACX 803 A 1 HETATM 9 C C08 A1ACX . . . G 4 117.712 86.963 98.417 1 75.89 ? C08 A1ACX 803 A 1 HETATM 10 C C09 A1ACX . . . G 4 118.465 87.813 99.436 1 76.91 ? C09 A1ACX 803 A 1 HETATM 11 C C11 A1ACX . . . G 4 118.463 88.295 101.919 1 79.14 ? C11 A1ACX 803 A 1 HETATM 12 C C12 A1ACX . . . G 4 117.95 89.378 102.865 1 80.83 ? C12 A1ACX 803 A 1 HETATM 13 C C13 A1ACX . . . G 4 118.423 89.14 104.297 1 79.62 ? C13 A1ACX 803 A 1 HETATM 14 C C14 A1ACX . . . G 4 119.146 90.355 104.873 1 79.21 ? C14 A1ACX 803 A 1 HETATM 15 C C15 A1ACX . . . G 4 119.602 90.13 106.313 1 77.45 ? C15 A1ACX 803 A 1 HETATM 16 C C16 A1ACX . . . G 4 120.451 91.287 106.832 1 80.35 ? C16 A1ACX 803 A 1 HETATM 17 C C19 A1ACX . . . G 4 121.557 92.481 108.513 1 77.12 ? C19 A1ACX 803 A 1 HETATM 18 C C20 A1ACX . . . G 4 122.725 92.086 109.413 1 71.92 ? C20 A1ACX 803 A 1 HETATM 19 C C21 A1ACX . . . G 4 122.919 93.059 110.573 1 74.61 ? C21 A1ACX 803 A 1 HETATM 20 C C27 A1ACX . . . G 4 127.277 92.45 113.22 1 73.38 ? C27 A1ACX 803 A 1 HETATM 21 C C28 A1ACX . . . G 4 127.665 91.605 114.432 1 81.25 ? C28 A1ACX 803 A 1 HETATM 22 C C30 A1ACX . . . G 4 129.418 90.734 115.764 1 81.21 ? C30 A1ACX 803 A 1 HETATM 23 C C31 A1ACX . . . G 4 129.81 91.195 113.476 1 75.02 ? C31 A1ACX 803 A 1 HETATM 24 C C32 A1ACX . . . G 4 129.511 92.974 115.016 1 80.68 ? C32 A1ACX 803 A 1 HETATM 25 N N29 A1ACX . . . G 4 129.1 91.628 114.666 1 86.07 ? N29 A1ACX 803 A 1 HETATM 26 O O17 A1ACX . . . G 4 120.791 92.145 106.09 1 77.49 ? O17 A1ACX 803 A 1 HETATM 27 O O18 A1ACX . . . G 4 120.841 91.328 108.174 1 81.99 ? O18 A1ACX 803 A 1 HETATM 28 O O22 A1ACX . . . G 4 123.632 92.405 111.582 1 80.26 ? O22 A1ACX 803 A 1 HETATM 29 O O24 A1ACX . . . G 4 125.743 93.699 110.853 1 79.34 ? O24 A1ACX 803 A 1 HETATM 30 O O25 A1ACX . . . G 4 125.759 91.24 110.709 1 86.85 ? O25 A1ACX 803 A 1 HETATM 31 O O26 A1ACX . . . G 4 125.894 92.333 113.04 1 80.12 ? O26 A1ACX 803 A 1 HETATM 32 P P23 A1ACX . . . G 4 125.279 92.424 111.514 1 101.98 ? P23 A1ACX 803 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #