data_8VP5
#
_model_server_result.job_id            8S1C-rGpsqYadFX3fV_Xlw 
_model_server_result.datetime_utc      '2024-12-26 14:37:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vp5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":804}' 
#
_entry.id    8VP5 
#
_exptl.entry_id    8VP5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VP5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VP5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 384 n n 
N C13 POV sing 385 n n 
N C14 POV sing 386 n n 
N C15 POV sing 387 n n 
P O11 POV sing 388 n n 
P O12 POV sing 389 n n 
P O13 POV sing 390 n n 
P O14 POV doub 391 n n 
C1 C2 POV sing 392 n n 
C1 O11 POV sing 393 n n 
C1 H1 POV sing 394 n n 
C1 H1A POV sing 395 n n 
C2 C3 POV sing 396 n n 
C2 O21 POV sing 397 n n 
C2 H2 POV sing 398 n n 
C3 O31 POV sing 399 n n 
C3 H3 POV sing 400 n n 
C3 H3A POV sing 401 n n 
C210 C211 POV sing 402 n n 
C210 C29 POV doub 403 z n 
C210 H210 POV sing 404 n n 
C310 C311 POV sing 405 n n 
C310 C39 POV sing 406 n n 
C310 H310 POV sing 407 n n 
C310 H31A POV sing 408 n n 
C11 C12 POV sing 409 n n 
C11 O12 POV sing 410 n n 
C11 H11 POV sing 411 n n 
C11 H11A POV sing 412 n n 
C211 C212 POV sing 413 n n 
C211 H211 POV sing 414 n n 
C211 H21A POV sing 415 n n 
C311 C312 POV sing 416 n n 
C311 H311 POV sing 417 n n 
C311 H31B POV sing 418 n n 
C12 H12 POV sing 419 n n 
C12 H12A POV sing 420 n n 
C212 C213 POV sing 421 n n 
C212 H212 POV sing 422 n n 
C212 H21B POV sing 423 n n 
C312 C313 POV sing 424 n n 
C312 H312 POV sing 425 n n 
C312 H31C POV sing 426 n n 
C13 H13 POV sing 427 n n 
C13 H13A POV sing 428 n n 
C13 H13B POV sing 429 n n 
C213 C214 POV sing 430 n n 
C213 H213 POV sing 431 n n 
C213 H21C POV sing 432 n n 
C313 C314 POV sing 433 n n 
C313 H313 POV sing 434 n n 
C313 H31D POV sing 435 n n 
C14 H14 POV sing 436 n n 
C14 H14A POV sing 437 n n 
C14 H14B POV sing 438 n n 
C214 C215 POV sing 439 n n 
C214 H214 POV sing 440 n n 
C214 H21D POV sing 441 n n 
C314 C315 POV sing 442 n n 
C314 H314 POV sing 443 n n 
C314 H31E POV sing 444 n n 
C15 H15 POV sing 445 n n 
C15 H15A POV sing 446 n n 
C15 H15B POV sing 447 n n 
C215 C216 POV sing 448 n n 
C215 H215 POV sing 449 n n 
C215 H21E POV sing 450 n n 
C315 C316 POV sing 451 n n 
C315 H315 POV sing 452 n n 
C315 H31F POV sing 453 n n 
C216 C217 POV sing 454 n n 
C216 H216 POV sing 455 n n 
C216 H21F POV sing 456 n n 
C316 H316 POV sing 457 n n 
C316 H31G POV sing 458 n n 
C316 H31H POV sing 459 n n 
C217 C218 POV sing 460 n n 
C217 H217 POV sing 461 n n 
C217 H21G POV sing 462 n n 
C218 H218 POV sing 463 n n 
C218 H21H POV sing 464 n n 
C218 H21J POV sing 465 n n 
C21 O21 POV sing 466 n n 
C21 C22 POV sing 467 n n 
C21 O22 POV doub 468 n n 
C22 C23 POV sing 469 n n 
C22 H22 POV sing 470 n n 
C22 H22A POV sing 471 n n 
C23 C24 POV sing 472 n n 
C23 H23 POV sing 473 n n 
C23 H23A POV sing 474 n n 
C24 C25 POV sing 475 n n 
C24 H24 POV sing 476 n n 
C24 H24A POV sing 477 n n 
C25 C26 POV sing 478 n n 
C25 H25 POV sing 479 n n 
C25 H25A POV sing 480 n n 
C26 C27 POV sing 481 n n 
C26 H26 POV sing 482 n n 
C26 H26A POV sing 483 n n 
C27 C28 POV sing 484 n n 
C27 H27 POV sing 485 n n 
C27 H27A POV sing 486 n n 
C28 C29 POV sing 487 n n 
C28 H28 POV sing 488 n n 
C28 H28A POV sing 489 n n 
C29 H29 POV sing 490 n n 
C31 O31 POV sing 491 n n 
C31 C32 POV sing 492 n n 
C31 O32 POV doub 493 n n 
C32 C33 POV sing 494 n n 
C32 H32 POV sing 495 n n 
C32 H32A POV sing 496 n n 
C33 C34 POV sing 497 n n 
C33 H33 POV sing 498 n n 
C33 H33A POV sing 499 n n 
C34 C35 POV sing 500 n n 
C34 H34 POV sing 501 n n 
C34 H34A POV sing 502 n n 
C35 C36 POV sing 503 n n 
C35 H35 POV sing 504 n n 
C35 H35A POV sing 505 n n 
C36 C37 POV sing 506 n n 
C36 H36 POV sing 507 n n 
C36 H36A POV sing 508 n n 
C37 C38 POV sing 509 n n 
C37 H37 POV sing 510 n n 
C37 H37A POV sing 511 n n 
C38 C39 POV sing 512 n n 
C38 H38 POV sing 513 n n 
C38 H38A POV sing 514 n n 
C39 H39 POV sing 515 n n 
C39 H39A POV sing 516 n n 
#
_atom_sites.entry_id                     8VP5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ADP A 1 801 801 ADP ADP . 
F 4 A1ACX A 1 802 803 A1ACX FAA . 
G 4 A1ACX A 1 803 804 A1ACX FAA . 
H 4 A1ACX B 1 801 802 A1ACX FAA . 
I 3 ADP B 1 802 801 ADP ADP . 
J 4 A1ACX B 1 803 802 A1ACX FAA . 
K 5 POV B 1 804 803 POV EPC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . K 5 93.856 126.836 104.156 1 86.43 ? N POV 804 B 1 
HETATM 2 P P POV . . . K 5 97.83 128.473 106.777 1 103.86 ? P POV 804 B 1 
HETATM 3 C C1 POV . . . K 5 99.046 129.82 104.864 1 73.16 ? C1 POV 804 B 1 
HETATM 4 C C2 POV . . . K 5 98.722 130.758 103.684 1 76.57 ? C2 POV 804 B 1 
HETATM 5 C C3 POV . . . K 5 98.22 129.988 102.444 1 72.85 ? C3 POV 804 B 1 
HETATM 6 C C210 POV . . . K 5 109.094 130.894 98.733 1 72.78 ? C210 POV 804 B 1 
HETATM 7 C C310 POV . . . K 5 106.712 128.517 94.934 1 67.71 ? C310 POV 804 B 1 
HETATM 8 C C11 POV . . . K 5 96.066 127.436 105.085 1 76.47 ? C11 POV 804 B 1 
HETATM 9 O O11 POV . . . K 5 97.879 129.682 105.648 1 82.84 ? O11 POV 804 B 1 
HETATM 10 C C211 POV . . . K 5 110.598 130.925 98.362 1 72.01 ? C211 POV 804 B 1 
HETATM 11 C C311 POV . . . K 5 108.1 128.134 94.414 1 69.41 ? C311 POV 804 B 1 
HETATM 12 C C12 POV . . . K 5 94.828 126.524 105.18 1 78.18 ? C12 POV 804 B 1 
HETATM 13 O O12 POV . . . K 5 96.869 127.23 106.246 1 79.7 ? O12 POV 804 B 1 
HETATM 14 C C212 POV . . . K 5 110.913 129.955 97.198 1 72.87 ? C212 POV 804 B 1 
HETATM 15 C C312 POV . . . K 5 108.201 128.292 92.893 1 74.08 ? C312 POV 804 B 1 
HETATM 16 C C13 POV . . . K 5 94.342 126.391 102.876 1 74.51 ? C13 POV 804 B 1 
HETATM 17 O O13 POV . . . K 5 99.239 127.962 107.008 1 80.55 ? O13 POV 804 B 1 
HETATM 18 C C213 POV . . . K 5 111.555 130.663 95.976 1 71.78 ? C213 POV 804 B 1 
HETATM 19 C C313 POV . . . K 5 109.652 128.29 92.422 1 75.7 ? C313 POV 804 B 1 
HETATM 20 C C14 POV . . . K 5 93.613 128.253 104.111 1 75.84 ? C14 POV 804 B 1 
HETATM 21 O O14 POV . . . K 5 97.27 129.018 108.075 1 74.79 ? O14 POV 804 B 1 
HETATM 22 C C214 POV . . . K 5 112.735 129.861 95.391 1 73.21 ? C214 POV 804 B 1 
HETATM 23 C C314 POV . . . K 5 109.784 128.242 90.901 1 74.32 ? C314 POV 804 B 1 
HETATM 24 C C15 POV . . . K 5 92.622 126.155 104.455 1 79.92 ? C15 POV 804 B 1 
HETATM 25 C C215 POV . . . K 5 112.89 130.074 93.868 1 72.5 ? C215 POV 804 B 1 
HETATM 26 C C315 POV . . . K 5 111.253 128.105 90.461 1 76.92 ? C315 POV 804 B 1 
HETATM 27 C C216 POV . . . K 5 114.346 130.359 93.462 1 77.16 ? C216 POV 804 B 1 
HETATM 28 C C316 POV . . . K 5 111.403 128.035 88.936 1 74.36 ? C316 POV 804 B 1 
HETATM 29 C C217 POV . . . K 5 114.575 130.203 91.955 1 77.75 ? C217 POV 804 B 1 
HETATM 30 C C218 POV . . . K 5 115.813 130.958 91.475 1 71.54 ? C218 POV 804 B 1 
HETATM 31 C C21 POV . . . K 5 99.952 132.776 103.85 1 82.98 ? C21 POV 804 B 1 
HETATM 32 O O21 POV . . . K 5 99.899 131.463 103.333 1 83.9 ? O21 POV 804 B 1 
HETATM 33 C C22 POV . . . K 5 101.101 133.731 103.462 1 77.53 ? C22 POV 804 B 1 
HETATM 34 O O22 POV . . . K 5 99.103 133.155 104.585 1 79.73 ? O22 POV 804 B 1 
HETATM 35 C C23 POV . . . K 5 102.322 133.011 102.896 1 77.31 ? C23 POV 804 B 1 
HETATM 36 C C24 POV . . . K 5 103.558 133.912 102.884 1 76.17 ? C24 POV 804 B 1 
HETATM 37 C C25 POV . . . K 5 104.874 133.121 102.945 1 77.14 ? C25 POV 804 B 1 
HETATM 38 C C26 POV . . . K 5 105.214 132.454 101.591 1 75.22 ? C26 POV 804 B 1 
HETATM 39 C C27 POV . . . K 5 106.721 132.56 101.232 1 72.11 ? C27 POV 804 B 1 
HETATM 40 C C28 POV . . . K 5 107.109 131.601 100.085 1 72.55 ? C28 POV 804 B 1 
HETATM 41 C C29 POV . . . K 5 108.617 131.652 99.743 1 74.1 ? C29 POV 804 B 1 
HETATM 42 C C31 POV . . . K 5 98.706 129.654 100.156 1 80.61 ? C31 POV 804 B 1 
HETATM 43 O O31 POV . . . K 5 99.185 130.082 101.415 1 77.24 ? O31 POV 804 B 1 
HETATM 44 C C32 POV . . . K 5 99.653 129.607 98.944 1 73.74 ? C32 POV 804 B 1 
HETATM 45 O O32 POV . . . K 5 97.572 129.337 100.028 1 83.9 ? O32 POV 804 B 1 
HETATM 46 C C33 POV . . . K 5 100.98 130.324 99.22 1 76.07 ? C33 POV 804 B 1 
HETATM 47 C C34 POV . . . K 5 101.587 130.925 97.94 1 77.13 ? C34 POV 804 B 1 
HETATM 48 C C35 POV . . . K 5 103.056 130.534 97.746 1 74.66 ? C35 POV 804 B 1 
HETATM 49 C C36 POV . . . K 5 103.374 130.291 96.274 1 75.12 ? C36 POV 804 B 1 
HETATM 50 C C37 POV . . . K 5 104.222 129.036 96.051 1 70.71 ? C37 POV 804 B 1 
HETATM 51 C C38 POV . . . K 5 105.37 128.905 97.072 1 72.85 ? C38 POV 804 B 1 
HETATM 52 C C39 POV . . . K 5 106.749 128.985 96.392 1 73.38 ? C39 POV 804 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           52 
#