data_8VP9 # _model_server_result.job_id gsPrTvvUNrTQU9-Rvx66Dg _model_server_result.datetime_utc '2024-12-10 04:05:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":803}' # _entry.id 8VP9 # _exptl.entry_id 8VP9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 480.639 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VP9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C24 H51 N O6 P 1' _chem_comp.formula_weight 480.639 _chem_comp.id A1ACX _chem_comp.mon_nstd_flag . _chem_comp.name '3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 N29 A1ACX sing 1 n n C32 N29 A1ACX sing 2 n n N29 C28 A1ACX sing 3 n n N29 C30 A1ACX sing 4 n n C28 C27 A1ACX sing 5 n n C27 O26 A1ACX sing 6 n n O26 P23 A1ACX sing 7 n n O25 P23 A1ACX doub 8 n n P23 O22 A1ACX sing 9 n n P23 O24 A1ACX sing 10 n n O22 C21 A1ACX sing 11 n n C20 C21 A1ACX sing 12 n n C20 C19 A1ACX sing 13 n n C19 O18 A1ACX sing 14 n n O18 C16 A1ACX sing 15 n n O17 C16 A1ACX doub 16 n n C16 C15 A1ACX sing 17 n n C15 C14 A1ACX sing 18 n n C14 C13 A1ACX sing 19 n n C13 C12 A1ACX sing 20 n n C12 C11 A1ACX sing 21 n n C11 C10 A1ACX sing 22 n n C10 C09 A1ACX sing 23 n n C09 C08 A1ACX sing 24 n n C08 C07 A1ACX sing 25 n n C07 C06 A1ACX sing 26 n n C06 C05 A1ACX sing 27 n n C05 C04 A1ACX sing 28 n n C03 C04 A1ACX sing 29 n n C03 C02 A1ACX sing 30 n n C01 C02 A1ACX sing 31 n n C10 H1 A1ACX sing 32 n n C10 H2 A1ACX sing 33 n n C01 H3 A1ACX sing 34 n n C01 H4 A1ACX sing 35 n n C01 H5 A1ACX sing 36 n n C02 H6 A1ACX sing 37 n n C02 H7 A1ACX sing 38 n n C03 H8 A1ACX sing 39 n n C03 H9 A1ACX sing 40 n n C04 H10 A1ACX sing 41 n n C04 H11 A1ACX sing 42 n n C05 H12 A1ACX sing 43 n n C05 H13 A1ACX sing 44 n n C06 H14 A1ACX sing 45 n n C06 H15 A1ACX sing 46 n n C07 H16 A1ACX sing 47 n n C07 H17 A1ACX sing 48 n n C08 H18 A1ACX sing 49 n n C08 H19 A1ACX sing 50 n n C09 H20 A1ACX sing 51 n n C09 H21 A1ACX sing 52 n n C11 H22 A1ACX sing 53 n n C11 H23 A1ACX sing 54 n n C12 H24 A1ACX sing 55 n n C12 H25 A1ACX sing 56 n n C13 H26 A1ACX sing 57 n n C13 H27 A1ACX sing 58 n n C14 H28 A1ACX sing 59 n n C14 H29 A1ACX sing 60 n n C15 H30 A1ACX sing 61 n n C15 H31 A1ACX sing 62 n n C19 H32 A1ACX sing 63 n n C19 H33 A1ACX sing 64 n n C20 H34 A1ACX sing 65 n n C20 H35 A1ACX sing 66 n n C21 H36 A1ACX sing 67 n n C21 H37 A1ACX sing 68 n n C27 H38 A1ACX sing 69 n n C27 H39 A1ACX sing 70 n n C28 H40 A1ACX sing 71 n n C28 H41 A1ACX sing 72 n n C30 H42 A1ACX sing 73 n n C30 H43 A1ACX sing 74 n n C30 H44 A1ACX sing 75 n n C31 H45 A1ACX sing 76 n n C31 H46 A1ACX sing 77 n n C31 H47 A1ACX sing 78 n n C32 H48 A1ACX sing 79 n n C32 H49 A1ACX sing 80 n n C32 H50 A1ACX sing 81 n n O24 H51 A1ACX sing 82 n n # _atom_sites.entry_id 8VP9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 801 801 ADP ADP . F 4 A1ACX A 1 802 802 A1ACX FAA . G 3 ADP B 1 801 701 ADP ADP . H 4 A1ACX B 1 802 703 A1ACX FAA . I 4 A1ACX B 1 803 704 A1ACX FAA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1ACX . . . I 4 102.27 121.278 86.346 1 45.47 ? C10 A1ACX 803 B 1 HETATM 2 C C01 A1ACX . . . I 4 103.364 115.688 93.722 1 48.29 ? C01 A1ACX 803 B 1 HETATM 3 C C02 A1ACX . . . I 4 104.316 116.88 93.785 1 50 ? C02 A1ACX 803 B 1 HETATM 4 C C03 A1ACX . . . I 4 104.507 117.536 92.42 1 42.65 ? C03 A1ACX 803 B 1 HETATM 5 C C04 A1ACX . . . I 4 104.932 118.998 92.531 1 41.65 ? C04 A1ACX 803 B 1 HETATM 6 C C05 A1ACX . . . I 4 105.182 119.623 91.162 1 41.05 ? C05 A1ACX 803 B 1 HETATM 7 C C06 A1ACX . . . I 4 104.265 120.816 90.91 1 43.93 ? C06 A1ACX 803 B 1 HETATM 8 C C07 A1ACX . . . I 4 104.324 121.297 89.463 1 43.43 ? C07 A1ACX 803 B 1 HETATM 9 C C08 A1ACX . . . I 4 102.956 121.232 88.789 1 43.65 ? C08 A1ACX 803 B 1 HETATM 10 C C09 A1ACX . . . I 4 102.903 122.049 87.501 1 42.36 ? C09 A1ACX 803 B 1 HETATM 11 C C11 A1ACX . . . I 4 101.931 122.197 85.175 1 50.62 ? C11 A1ACX 803 B 1 HETATM 12 C C12 A1ACX . . . I 4 102.857 121.986 83.98 1 50.58 ? C12 A1ACX 803 B 1 HETATM 13 C C13 A1ACX . . . I 4 102.564 122.973 82.853 1 47.19 ? C13 A1ACX 803 B 1 HETATM 14 C C14 A1ACX . . . I 4 103.84 123.473 82.181 1 46.71 ? C14 A1ACX 803 B 1 HETATM 15 C C15 A1ACX . . . I 4 103.551 124.25 80.9 1 48.01 ? C15 A1ACX 803 B 1 HETATM 16 C C16 A1ACX . . . I 4 104.829 124.715 80.206 1 51.16 ? C16 A1ACX 803 B 1 HETATM 17 C C19 A1ACX . . . I 4 105.816 126.079 78.575 1 44.08 ? C19 A1ACX 803 B 1 HETATM 18 C C20 A1ACX . . . I 4 105.242 127.205 77.718 1 43.05 ? C20 A1ACX 803 B 1 HETATM 19 C C21 A1ACX . . . I 4 105.534 127.014 76.232 1 50.64 ? C21 A1ACX 803 B 1 HETATM 20 C C27 A1ACX . . . I 4 102.093 126.436 73.766 1 48.2 ? C27 A1ACX 803 B 1 HETATM 21 C C28 A1ACX . . . I 4 100.583 126.24 73.891 1 49.57 ? C28 A1ACX 803 B 1 HETATM 22 C C30 A1ACX . . . I 4 100.541 125.351 71.683 1 47.72 ? C30 A1ACX 803 B 1 HETATM 23 C C31 A1ACX . . . I 4 98.671 125.079 73.111 1 52.23 ? C31 A1ACX 803 B 1 HETATM 24 C C32 A1ACX . . . I 4 100.674 123.893 73.546 1 49.7 ? C32 A1ACX 803 B 1 HETATM 25 N N29 A1ACX . . . I 4 100.12 125.143 73.057 1 57.21 ? N29 A1ACX 803 B 1 HETATM 26 O O17 A1ACX . . . I 4 105.863 124.674 80.783 1 50.85 ? O17 A1ACX 803 B 1 HETATM 27 O O18 A1ACX . . . I 4 104.775 125.202 78.897 1 52.08 ? O18 A1ACX 803 B 1 HETATM 28 O O22 A1ACX . . . I 4 104.311 126.889 75.565 1 58.35 ? O22 A1ACX 803 B 1 HETATM 29 O O24 A1ACX . . . I 4 104.701 128.91 74.01 1 53.11 ? O24 A1ACX 803 B 1 HETATM 30 O O25 A1ACX . . . I 4 103.198 129.181 75.943 1 49.46 ? O25 A1ACX 803 B 1 HETATM 31 O O26 A1ACX . . . I 4 102.371 127.797 73.933 1 52.73 ? O26 A1ACX 803 B 1 HETATM 32 P P23 A1ACX . . . I 4 103.659 128.23 74.865 1 75.01 ? P23 A1ACX 803 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #