data_8VPS # _model_server_result.job_id EbBmwoCasfQRT--To6GHHA _model_server_result.datetime_utc '2025-01-11 06:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8VPS # _exptl.entry_id 8VPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 73.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIMETHYLFORMAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.02 _cell.angle_gamma 90 _cell.entry_id 8VPS _cell.length_a 51.308 _cell.length_b 9.96 _cell.length_c 19.974 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C02 I6W 1 A I6W 1 1_555 A N AIB 2 A AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale2 A C AIB 2 A AIB 2 1_555 A N ALA 3 A ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ALA 3 A ALA 3 1_555 A N AIB 4 A AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C AIB 4 A AIB 4 1_555 A N LEU 5 A LEU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C LEU 5 A LEU 5 1_555 A N AIB 6 A AIB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C AIB 6 A AIB 6 1_555 A N ALA 7 A ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C ALA 7 A ALA 7 1_555 A N AIB 8 A AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C AIB 8 A AIB 8 1_555 A N LEU 9 A LEU 9 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C AIB 8 A AIB 8 1_555 A N LEU 9 A LEU 9 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.322 ? covale ? covale10 A C LEU 9 A LEU 9 1_555 A N AIB 10 A AIB 10 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C LEU 9 A LEU 9 1_555 A N AIB 10 A AIB 10 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C AIB 10 A AIB 10 1_555 A N GLN 11 A GLN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C GLN 11 A GLN 11 1_555 A N AIB 12 A AIB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C AIB 12 A AIB 12 1_555 A N LEU 13 A LEU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 A C LEU 13 A LEU 13 1_555 A N15 I77 14 A I77 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C3 H7 N O' _chem_comp.formula_weight 73.094 _chem_comp.id DMF _chem_comp.mon_nstd_flag . _chem_comp.name DIMETHYLFORMAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N DMF sing 28 n n C1 H11 DMF sing 29 n n C1 H12 DMF sing 30 n n C1 H13 DMF sing 31 n n C2 N DMF sing 32 n n C2 H21 DMF sing 33 n n C2 H22 DMF sing 34 n n C2 H23 DMF sing 35 n n C O DMF doub 36 n n C N DMF sing 37 n n C HC DMF sing 38 n n # _atom_sites.entry_id 8VPS _atom_sites.fract_transf_matrix[1][1] 0.01949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00137 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.100402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.050189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMF A 1 101 10 DMF DMF . C 3 HOH A 1 201 2 HOH HOH . C 3 HOH A 2 202 1 HOH HOH . C 3 HOH A 3 203 6 HOH HOH . C 3 HOH A 4 204 3 HOH HOH . C 3 HOH A 5 205 7 HOH HOH . C 3 HOH A 6 206 5 HOH HOH . C 3 HOH A 7 207 9 HOH HOH . C 3 HOH A 8 208 4 HOH HOH . C 3 HOH A 9 209 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMF . . . B 2 -3.767 -1.058 5.492 1 26.82 ? C1 DMF 101 A 1 HETATM 2 C C2 DMF . . . B 2 -3.55 1.464 5.856 1 30.76 ? C2 DMF 101 A 1 HETATM 3 C C DMF . . . B 2 -1.856 0.145 4.688 1 32.66 ? C DMF 101 A 1 HETATM 4 O O DMF . . . B 2 -1.208 1.181 4.549 1 35.96 ? O DMF 101 A 1 HETATM 5 N N DMF . . . B 2 -3.02 0.191 5.325 1 28.85 ? N DMF 101 A 1 HETATM 6 H H11 DMF . . . B 2 -3.198 -1.882 5.062 1 32.19 ? H11 DMF 101 A 1 HETATM 7 H H12 DMF . . . B 2 -4.729 -0.976 4.985 1 32.19 ? H12 DMF 101 A 1 HETATM 8 H H13 DMF . . . B 2 -3.931 -1.244 6.553 1 32.19 ? H13 DMF 101 A 1 HETATM 9 H H21 DMF . . . B 2 -2.911 2.286 5.533 1 36.91 ? H21 DMF 101 A 1 HETATM 10 H H22 DMF . . . B 2 -3.568 1.424 6.945 1 36.91 ? H22 DMF 101 A 1 HETATM 11 H H23 DMF . . . B 2 -4.561 1.621 5.482 1 36.91 ? H23 DMF 101 A 1 HETATM 12 H HC DMF . . . B 2 -1.569 -0.775 4.179 1 39.2 ? HC DMF 101 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #