data_8VPT # _model_server_result.job_id Fp2sHcNesGJqVNzedWypzw _model_server_result.datetime_utc '2024-10-12 19:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8VPT # _exptl.entry_id 8VPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.99 _cell.angle_beta 95.02 _cell.angle_gamma 90.1 _cell.entry_id 8VPT _cell.length_a 14.05 _cell.length_b 16.56 _cell.length_c 28.675 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C02 I6W 1 A I6W 1 1_555 A N AIB 2 A AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 A C AIB 2 A AIB 2 1_555 A N ALA 3 A ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ALA 3 A ALA 3 1_555 A N AIB 4 A AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C AIB 4 A AIB 4 1_555 A N ALA 5 A ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C ALA 5 A ALA 5 1_555 A N AIB 6 A AIB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C AIB 6 A AIB 6 1_555 A N LEU 7 A LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C LEU 7 A LEU 7 1_555 A N AIB 8 A AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C AIB 8 A AIB 8 1_555 A N ALA 9 A ALA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 A C ALA 9 A ALA 9 1_555 A N AIB 10 A AIB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C AIB 10 A AIB 10 1_555 A N LEU 11 A LEU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 A C LEU 11 A LEU 11 1_555 A N AIB 12 A AIB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C AIB 12 A AIB 12 1_555 A N GLN 13 A GLN 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale13 A C GLN 13 A GLN 13 1_555 A N AIB 14 A AIB 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C AIB 14 A AIB 14 1_555 A N LEU 15 A LEU 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 A C LEU 15 A LEU 15 1_555 A N15 I77 16 A I77 16 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.406 ? covale ? covale16 A C LEU 15 A LEU 15 1_555 A N15 I77 16 A I77 16 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.413 ? covale ? covale17 B C02 I6W 1 B I6W 1 1_555 B N AIB 2 B AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale18 B C AIB 2 B AIB 2 1_555 B N ALA 3 B ALA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 B C ALA 3 B ALA 3 1_555 B N AIB 4 B AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 B C AIB 4 B AIB 4 1_555 B N ALA 5 B ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 B C ALA 5 B ALA 5 1_555 B N AIB 6 B AIB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale22 B C AIB 6 B AIB 6 1_555 B N LEU 7 B LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale23 B C LEU 7 B LEU 7 1_555 B N AIB 8 B AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 B C AIB 8 B AIB 8 1_555 B N ALA 9 B ALA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C ALA 9 B ALA 9 1_555 B N AIB 10 B AIB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale26 B C AIB 10 B AIB 10 1_555 B N LEU 11 B LEU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale27 B C LEU 11 B LEU 11 1_555 B N AIB 12 B AIB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 B C AIB 12 B AIB 12 1_555 B N GLN 13 B GLN 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale29 B C GLN 13 B GLN 13 1_555 B N AIB 14 B AIB 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale30 B C AIB 14 B AIB 14 1_555 B N LEU 15 B LEU 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale31 B C LEU 15 B LEU 15 1_555 B N15 I77 16 B I77 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 28 n n C1 C2 CCN sing 29 n n C2 H21 CCN sing 30 n n C2 H22 CCN sing 31 n n C2 H23 CCN sing 32 n n # _atom_sites.entry_id 8VPT _atom_sites.fract_transf_matrix[1][1] 0.071174 _atom_sites.fract_transf_matrix[1][2] 0.000124 _atom_sites.fract_transf_matrix[1][3] 0.006331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.060387 _atom_sites.fract_transf_matrix[2][3] 0.008519 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CCN A 1 101 36 CCN CCN . D 2 CCN A 1 102 37 CCN CCN . E 2 CCN B 1 101 38 CCN CCN . F 3 HOH A 1 201 33 HOH HOH . F 3 HOH A 2 202 35 HOH HOH . F 3 HOH A 3 203 6 HOH HOH . F 3 HOH A 4 204 23 HOH HOH . F 3 HOH A 5 205 10 HOH HOH . F 3 HOH A 6 206 25 HOH HOH . F 3 HOH A 7 207 1 HOH HOH . F 3 HOH A 8 208 12 HOH HOH . F 3 HOH A 9 209 5 HOH HOH . F 3 HOH A 10 210 8 HOH HOH . F 3 HOH A 11 211 15 HOH HOH . F 3 HOH A 12 212 28 HOH HOH . F 3 HOH A 13 213 7 HOH HOH . F 3 HOH A 14 214 18 HOH HOH . F 3 HOH A 15 215 13 HOH HOH . F 3 HOH A 16 216 16 HOH HOH . F 3 HOH A 17 217 26 HOH HOH . F 3 HOH A 18 218 22 HOH HOH . F 3 HOH A 19 219 32 HOH HOH . F 3 HOH A 20 220 19 HOH HOH . F 3 HOH A 21 221 31 HOH HOH . F 3 HOH A 22 222 20 HOH HOH . F 3 HOH A 23 223 30 HOH HOH . F 3 HOH A 24 224 34 HOH HOH . G 3 HOH B 1 201 9 HOH HOH . G 3 HOH B 2 202 3 HOH HOH . G 3 HOH B 3 203 14 HOH HOH . G 3 HOH B 4 204 24 HOH HOH . G 3 HOH B 5 205 2 HOH HOH . G 3 HOH B 6 206 4 HOH HOH . G 3 HOH B 7 207 27 HOH HOH . G 3 HOH B 8 208 29 HOH HOH . G 3 HOH B 9 209 17 HOH HOH . G 3 HOH B 10 210 11 HOH HOH . G 3 HOH B 11 211 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . E 2 5.955 15.591 7.029 1 28.38 ? N CCN 101 B 1 HETATM 2 C C1 CCN . . . E 2 6.469 16.086 7.932 1 28.66 ? C1 CCN 101 B 1 HETATM 3 C C2 CCN . . . E 2 7.137 16.712 9.056 1 28.76 ? C2 CCN 101 B 1 HETATM 4 H H21 CCN . . . E 2 7.546 17.546 8.777 1 34.67 ? H21 CCN 101 B 1 HETATM 5 H H22 CCN . . . E 2 6.498 16.896 9.762 1 34.67 ? H22 CCN 101 B 1 HETATM 6 H H23 CCN . . . E 2 7.827 16.123 9.402 1 34.67 ? H23 CCN 101 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #