data_8VQS
#
_model_server_result.job_id            OS-1NTC__ZAaD0xECF6m3g 
_model_server_result.datetime_utc      '2025-08-16 09:52:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vqs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":206}' 
#
_entry.id    8VQS 
#
_exptl.entry_id    8VQS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VQS 
_cell.length_a            59.092 
_cell.length_b            67.684 
_cell.length_c            67.684 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VQS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,Q 1 1 
B,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 M FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 99 n n 
S C1 DMS sing 100 n n 
S C2 DMS sing 101 n n 
C1 H11 DMS sing 102 n n 
C1 H12 DMS sing 103 n n 
C1 H13 DMS sing 104 n n 
C2 H21 DMS sing 105 n n 
C2 H22 DMS sing 106 n n 
C2 H23 DMS sing 107 n n 
#
_atom_sites.entry_id                     8VQS 
_atom_sites.fract_transf_matrix[1][1]    0.016923 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 139 HEM HEM . 
D 3 GOL A 1 202 140 GOL GOL . 
E 3 GOL A 1 203 141 GOL GOL . 
F 3 GOL A 1 204 142 GOL GOL . 
G 4 A1ADK A 1 205 143 A1ADK CHN . 
H 5 DMS A 1 206 144 DMS DMS . 
I 3 GOL A 1 207 145 GOL GOL . 
J 6 SO4 A 1 208 1 SO4 SO4 . 
K 6 SO4 A 1 209 2 SO4 SO4 . 
L 6 SO4 A 1 210 4 SO4 SO4 . 
M 2 HEM B 1 201 139 HEM HEM . 
N 4 A1ADK B 1 202 140 A1ADK CHN . 
O 3 GOL B 1 203 141 GOL GOL . 
P 6 SO4 B 1 204 3 SO4 SO4 . 
Q 7 HOH A 1 301 52 HOH HOH . 
Q 7 HOH A 2 302 110 HOH HOH . 
Q 7 HOH A 3 303 1 HOH HOH . 
Q 7 HOH A 4 304 98 HOH HOH . 
Q 7 HOH A 5 305 4 HOH HOH . 
Q 7 HOH A 6 306 78 HOH HOH . 
Q 7 HOH A 7 307 9 HOH HOH . 
Q 7 HOH A 8 308 7 HOH HOH . 
Q 7 HOH A 9 309 113 HOH HOH . 
Q 7 HOH A 10 310 80 HOH HOH . 
Q 7 HOH A 11 311 111 HOH HOH . 
Q 7 HOH A 12 312 92 HOH HOH . 
Q 7 HOH A 13 313 93 HOH HOH . 
Q 7 HOH A 14 314 100 HOH HOH . 
Q 7 HOH A 15 315 47 HOH HOH . 
Q 7 HOH A 16 316 103 HOH HOH . 
Q 7 HOH A 17 317 70 HOH HOH . 
Q 7 HOH A 18 318 5 HOH HOH . 
Q 7 HOH A 19 319 2 HOH HOH . 
Q 7 HOH A 20 320 84 HOH HOH . 
Q 7 HOH A 21 321 17 HOH HOH . 
Q 7 HOH A 22 322 43 HOH HOH . 
Q 7 HOH A 23 323 64 HOH HOH . 
Q 7 HOH A 24 324 16 HOH HOH . 
Q 7 HOH A 25 325 29 HOH HOH . 
Q 7 HOH A 26 326 10 HOH HOH . 
Q 7 HOH A 27 327 73 HOH HOH . 
Q 7 HOH A 28 328 6 HOH HOH . 
Q 7 HOH A 29 329 106 HOH HOH . 
Q 7 HOH A 30 330 102 HOH HOH . 
Q 7 HOH A 31 331 104 HOH HOH . 
Q 7 HOH A 32 332 44 HOH HOH . 
Q 7 HOH A 33 333 90 HOH HOH . 
Q 7 HOH A 34 334 3 HOH HOH . 
Q 7 HOH A 35 335 69 HOH HOH . 
Q 7 HOH A 36 336 45 HOH HOH . 
Q 7 HOH A 37 337 34 HOH HOH . 
Q 7 HOH A 38 338 49 HOH HOH . 
Q 7 HOH A 39 339 31 HOH HOH . 
Q 7 HOH A 40 340 94 HOH HOH . 
Q 7 HOH A 41 341 12 HOH HOH . 
Q 7 HOH A 42 342 46 HOH HOH . 
Q 7 HOH A 43 343 39 HOH HOH . 
Q 7 HOH A 44 344 95 HOH HOH . 
Q 7 HOH A 45 345 22 HOH HOH . 
Q 7 HOH A 46 346 28 HOH HOH . 
Q 7 HOH A 47 347 97 HOH HOH . 
Q 7 HOH A 48 348 42 HOH HOH . 
Q 7 HOH A 49 349 26 HOH HOH . 
Q 7 HOH A 50 350 11 HOH HOH . 
Q 7 HOH A 51 351 108 HOH HOH . 
Q 7 HOH A 52 352 79 HOH HOH . 
Q 7 HOH A 53 353 96 HOH HOH . 
Q 7 HOH A 54 354 56 HOH HOH . 
Q 7 HOH A 55 355 109 HOH HOH . 
Q 7 HOH A 56 356 112 HOH HOH . 
Q 7 HOH A 57 357 105 HOH HOH . 
Q 7 HOH A 58 358 74 HOH HOH . 
Q 7 HOH A 59 359 76 HOH HOH . 
Q 7 HOH A 60 360 75 HOH HOH . 
R 7 HOH B 1 301 13 HOH HOH . 
R 7 HOH B 2 302 72 HOH HOH . 
R 7 HOH B 3 303 38 HOH HOH . 
R 7 HOH B 4 304 89 HOH HOH . 
R 7 HOH B 5 305 63 HOH HOH . 
R 7 HOH B 6 306 83 HOH HOH . 
R 7 HOH B 7 307 32 HOH HOH . 
R 7 HOH B 8 308 48 HOH HOH . 
R 7 HOH B 9 309 82 HOH HOH . 
R 7 HOH B 10 310 15 HOH HOH . 
R 7 HOH B 11 311 62 HOH HOH . 
R 7 HOH B 12 312 65 HOH HOH . 
R 7 HOH B 13 313 33 HOH HOH . 
R 7 HOH B 14 314 85 HOH HOH . 
R 7 HOH B 15 315 67 HOH HOH . 
R 7 HOH B 16 316 59 HOH HOH . 
R 7 HOH B 17 317 27 HOH HOH . 
R 7 HOH B 18 318 60 HOH HOH . 
R 7 HOH B 19 319 19 HOH HOH . 
R 7 HOH B 20 320 35 HOH HOH . 
R 7 HOH B 21 321 87 HOH HOH . 
R 7 HOH B 22 322 25 HOH HOH . 
R 7 HOH B 23 323 53 HOH HOH . 
R 7 HOH B 24 324 50 HOH HOH . 
R 7 HOH B 25 325 55 HOH HOH . 
R 7 HOH B 26 326 14 HOH HOH . 
R 7 HOH B 27 327 30 HOH HOH . 
R 7 HOH B 28 328 8 HOH HOH . 
R 7 HOH B 29 329 20 HOH HOH . 
R 7 HOH B 30 330 36 HOH HOH . 
R 7 HOH B 31 331 41 HOH HOH . 
R 7 HOH B 32 332 24 HOH HOH . 
R 7 HOH B 33 333 58 HOH HOH . 
R 7 HOH B 34 334 61 HOH HOH . 
R 7 HOH B 35 335 51 HOH HOH . 
R 7 HOH B 36 336 37 HOH HOH . 
R 7 HOH B 37 337 81 HOH HOH . 
R 7 HOH B 38 338 91 HOH HOH . 
R 7 HOH B 39 339 18 HOH HOH . 
R 7 HOH B 40 340 40 HOH HOH . 
R 7 HOH B 41 341 57 HOH HOH . 
R 7 HOH B 42 342 21 HOH HOH . 
R 7 HOH B 43 343 77 HOH HOH . 
R 7 HOH B 44 344 107 HOH HOH . 
R 7 HOH B 45 345 68 HOH HOH . 
R 7 HOH B 46 346 101 HOH HOH . 
R 7 HOH B 47 347 23 HOH HOH . 
R 7 HOH B 48 348 66 HOH HOH . 
R 7 HOH B 49 349 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . H 5 11.322 -8.225 -6.799 1 87.49 0 S DMS 206 A 1 
HETATM 2 O O DMS . . . H 5 10.85 -7.833 -8.19 1 76.59 0 O DMS 206 A 1 
HETATM 3 C C1 DMS . . . H 5 13.043 -7.797 -6.686 1 85.4 0 C1 DMS 206 A 1 
HETATM 4 C C2 DMS . . . H 5 11.494 -9.998 -6.785 1 84.5 0 C2 DMS 206 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           414 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#