data_8VRA
#
_model_server_result.job_id            VbGA40EEwdh4GoISQZpWTA 
_model_server_result.datetime_utc      '2024-10-18 02:23:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vra 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    8VRA 
#
_exptl.entry_id    8VRA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              562.61 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMG 510 (bound form)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VRA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VRA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 25 B CYS 45 1_555 B SG CYS 80 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 E SG CYS 25 E CYS 22 1_555 E SG CYS 99 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 C SG CYS 6 C CYS 12 1_555 F C25 MOV . D MOV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? 
#
_chem_comp.formula           'C30 H32 F2 N6 O3' 
_chem_comp.formula_weight    562.61 
_chem_comp.id                MOV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMG 510 (bound form)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-4-[(2S)-2-methyl-4-propanoylpiperazin-1-yl]-1-[4-methyl-2-(propan-2-yl)pyridin-3-yl]pyrido[2,3-d]pyrimidin-2(1H)-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C13 MOV sing 235 n n 
O3 C26 MOV sing 236 n n 
C27 C26 MOV doub 237 n y 
C27 C28 MOV sing 238 n y 
C26 C6 MOV sing 239 n y 
C13 C12 MOV doub 240 n y 
C13 C9 MOV sing 241 n y 
C12 C11 MOV sing 242 n y 
C19 C20 MOV sing 243 n n 
C19 N6 MOV sing 244 n n 
C28 C29 MOV doub 245 n y 
C6 C3 MOV sing 246 n n 
C6 C30 MOV doub 247 n y 
F1 C4 MOV sing 248 n n 
C3 C4 MOV doub 249 n y 
C3 N1 MOV sing 250 n y 
C4 C5 MOV sing 251 n y 
N1 C2 MOV doub 252 n y 
C5 C1 MOV doub 253 n y 
C2 C1 MOV sing 254 n y 
C2 N4 MOV sing 255 n n 
C20 N2 MOV sing 256 n n 
C20 C21 MOV sing 257 n n 
C1 C7 MOV sing 258 n n 
C9 N4 MOV sing 259 n n 
C9 C10 MOV doub 260 n y 
C11 N5 MOV doub 261 n y 
N4 C8 MOV sing 262 n n 
C7 N3 MOV doub 263 n n 
C7 N2 MOV sing 264 n n 
C8 N3 MOV sing 265 n n 
C8 O1 MOV doub 266 n n 
N2 C17 MOV sing 267 n n 
C24 C23 MOV sing 268 n n 
C24 C25 MOV sing 269 n n 
C17 C18 MOV sing 270 n n 
N6 C23 MOV sing 271 n n 
N6 C18 MOV sing 272 n n 
C29 C30 MOV sing 273 n y 
C30 F2 MOV sing 274 n n 
C23 O2 MOV doub 275 n n 
N5 C10 MOV sing 276 n y 
C10 C14 MOV sing 277 n n 
C14 C16 MOV sing 278 n n 
C14 C15 MOV sing 279 n n 
C21 H1 MOV sing 280 n n 
C21 H2 MOV sing 281 n n 
C21 H3 MOV sing 282 n n 
C20 H4 MOV sing 283 n n 
C19 H5 MOV sing 284 n n 
C19 H6 MOV sing 285 n n 
C24 H7 MOV sing 286 n n 
C24 H8 MOV sing 287 n n 
C25 H9 MOV sing 288 n n 
C25 H10 MOV sing 289 n n 
C25 H11 MOV sing 290 n n 
C18 H12 MOV sing 291 n n 
C18 H13 MOV sing 292 n n 
C17 H14 MOV sing 293 n n 
C17 H15 MOV sing 294 n n 
C22 H16 MOV sing 295 n n 
C22 H17 MOV sing 296 n n 
C22 H18 MOV sing 297 n n 
C12 H19 MOV sing 298 n n 
C11 H20 MOV sing 299 n n 
C14 H21 MOV sing 300 n n 
C16 H22 MOV sing 301 n n 
C16 H23 MOV sing 302 n n 
C16 H24 MOV sing 303 n n 
C15 H25 MOV sing 304 n n 
C15 H26 MOV sing 305 n n 
C15 H27 MOV sing 306 n n 
C5 H28 MOV sing 307 n n 
C29 H29 MOV sing 308 n n 
C28 H30 MOV sing 309 n n 
C27 H31 MOV sing 310 n n 
O3 H32 MOV sing 311 n n 
#
_atom_sites.entry_id                     8VRA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           MOV 
_pdbx_nonpoly_scheme.pdb_strand_id    D 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      301 
_pdbx_nonpoly_scheme.auth_seq_num     201 
_pdbx_nonpoly_scheme.pdb_mon_id       MOV 
_pdbx_nonpoly_scheme.auth_mon_id      MOV 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 MOV . . . F 6 156.922 151.19 151.417 1 20 ? C21 MOV 301 D 1 
HETATM 2 C C20 MOV . . . F 6 155.685 151.634 152.182 1 20 ? C20 MOV 301 D 1 
HETATM 3 C C19 MOV . . . F 6 154.428 151.524 151.344 1 20 ? C19 MOV 301 D 1 
HETATM 4 N N6 MOV . . . F 6 154.177 150.131 150.97 1 20 ? N6 MOV 301 D 1 
HETATM 5 C C23 MOV . . . F 6 153.67 149.76 149.786 1 20 ? C23 MOV 301 D 1 
HETATM 6 O O2 MOV . . . F 6 154.403 149.538 148.833 1 20 ? O2 MOV 301 D 1 
HETATM 7 C C24 MOV . . . F 6 152.189 149.619 149.677 1 20 ? C24 MOV 301 D 1 
HETATM 8 C C25 MOV . . . F 6 151.781 148.713 148.54 1 20 ? C25 MOV 301 D 1 
HETATM 9 C C18 MOV . . . F 6 154.518 149.151 151.997 1 20 ? C18 MOV 301 D 1 
HETATM 10 C C17 MOV . . . F 6 154.532 149.791 153.363 1 20 ? C17 MOV 301 D 1 
HETATM 11 N N2 MOV . . . F 6 155.538 150.846 153.414 1 20 ? N2 MOV 301 D 1 
HETATM 12 C C7 MOV . . . F 6 156.313 151.051 154.494 1 20 ? C7 MOV 301 D 1 
HETATM 13 N N3 MOV . . . F 6 157.625 150.8 154.375 1 20 ? N3 MOV 301 D 1 
HETATM 14 C C8 MOV . . . F 6 158.446 150.961 155.416 1 20 ? C8 MOV 301 D 1 
HETATM 15 O O1 MOV . . . F 6 159.649 150.742 155.324 1 20 ? O1 MOV 301 D 1 
HETATM 16 N N4 MOV . . . F 6 157.932 151.393 156.652 1 20 ? N4 MOV 301 D 1 
HETATM 17 C C9 MOV . . . F 6 158.788 151.527 157.804 1 20 ? C9 MOV 301 D 1 
HETATM 18 C C13 MOV . . . F 6 159.253 152.773 158.204 1 20 ? C13 MOV 301 D 1 
HETATM 19 C C22 MOV . . . F 6 158.941 154.014 157.427 1 20 ? C22 MOV 301 D 1 
HETATM 20 C C12 MOV . . . F 6 160.044 152.829 159.343 1 20 ? C12 MOV 301 D 1 
HETATM 21 C C11 MOV . . . F 6 160.31 151.669 160.035 1 20 ? C11 MOV 301 D 1 
HETATM 22 N N5 MOV . . . F 6 159.848 150.464 159.676 1 20 ? N5 MOV 301 D 1 
HETATM 23 C C10 MOV . . . F 6 159.086 150.378 158.579 1 20 ? C10 MOV 301 D 1 
HETATM 24 C C14 MOV . . . F 6 158.573 149.003 158.2 1 20 ? C14 MOV 301 D 1 
HETATM 25 C C16 MOV . . . F 6 159.645 147.962 158.415 1 20 ? C16 MOV 301 D 1 
HETATM 26 C C15 MOV . . . F 6 157.321 148.682 158.986 1 20 ? C15 MOV 301 D 1 
HETATM 27 C C2 MOV . . . F 6 156.585 151.625 156.81 1 20 ? C2 MOV 301 D 1 
HETATM 28 N N1 MOV . . . F 6 156.184 152.013 158.008 1 20 ? N1 MOV 301 D 1 
HETATM 29 C C1 MOV . . . F 6 155.743 151.461 155.718 1 20 ? C1 MOV 301 D 1 
HETATM 30 C C5 MOV . . . F 6 154.382 151.733 155.914 1 20 ? C5 MOV 301 D 1 
HETATM 31 C C4 MOV . . . F 6 153.962 152.131 157.143 1 20 ? C4 MOV 301 D 1 
HETATM 32 F F1 MOV . . . F 6 152.659 152.391 157.345 1 20 ? F1 MOV 301 D 1 
HETATM 33 C C3 MOV . . . F 6 154.886 152.27 158.193 1 20 ? C3 MOV 301 D 1 
HETATM 34 C C6 MOV . . . F 6 154.538 152.702 159.567 1 20 ? C6 MOV 301 D 1 
HETATM 35 C C30 MOV . . . F 6 153.878 151.842 160.421 1 20 ? C30 MOV 301 D 1 
HETATM 36 F F2 MOV . . . F 6 153.522 150.616 159.98 1 20 ? F2 MOV 301 D 1 
HETATM 37 C C29 MOV . . . F 6 153.547 152.192 161.708 1 20 ? C29 MOV 301 D 1 
HETATM 38 C C28 MOV . . . F 6 153.914 153.457 162.154 1 20 ? C28 MOV 301 D 1 
HETATM 39 C C27 MOV . . . F 6 154.586 154.333 161.335 1 20 ? C27 MOV 301 D 1 
HETATM 40 C C26 MOV . . . F 6 154.908 153.959 160.043 1 20 ? C26 MOV 301 D 1 
HETATM 41 O O3 MOV . . . F 6 155.58 154.829 159.224 1 20 ? O3 MOV 301 D 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           41 
#