data_8VSG
#
_model_server_result.job_id            0vqGDgPZIjEa-MFqFCHhrg 
_model_server_result.datetime_utc      '2024-11-08 18:05:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vsg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":412}' 
#
_entry.id    8VSG 
#
_exptl.entry_id    8VSG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VSG 
_cell.length_a            102.299 
_cell.length_b            103.523 
_cell.length_c            67.835 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VSG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 D C15 A1AD0 . A A1AD0 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 P C15 A1AD0 . B A1AD0 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 193 n n 
C1 C2 EDO sing 194 n n 
C1 H11 EDO sing 195 n n 
C1 H12 EDO sing 196 n n 
O1 HO1 EDO sing 197 n n 
C2 O2 EDO sing 198 n n 
C2 H21 EDO sing 199 n n 
C2 H22 EDO sing 200 n n 
O2 HO2 EDO sing 201 n n 
#
_atom_sites.entry_id                     8VSG 
_atom_sites.fract_transf_matrix[1][1]    0.009775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BTB A 1 401 502 BTB BTB . 
D 3 A1AD0 A 1 402 900 A1AD0 LIG . 
E 4 DMS A 1 403 901 DMS DMS . 
F 4 DMS A 1 404 902 DMS DMS . 
G 4 DMS A 1 405 903 DMS DMS . 
H 4 DMS A 1 406 905 DMS DMS . 
I 4 DMS A 1 407 906 DMS DMS . 
J 4 DMS A 1 408 907 DMS DMS . 
K 4 DMS A 1 409 908 DMS DMS . 
L 4 DMS A 1 410 905 DMS DMS . 
M 5 EDO A 1 411 501 EDO EDO . 
N 5 EDO A 1 412 502 EDO EDO . 
O 4 DMS B 1 401 909 DMS DMS . 
P 3 A1AD0 B 1 402 900 A1AD0 LIG . 
Q 4 DMS B 1 403 901 DMS DMS . 
R 4 DMS B 1 404 902 DMS DMS . 
S 4 DMS B 1 405 904 DMS DMS . 
T 4 DMS B 1 406 906 DMS DMS . 
U 6 HOH A 1 501 171 HOH HOH . 
U 6 HOH A 2 502 186 HOH HOH . 
U 6 HOH A 3 503 147 HOH HOH . 
U 6 HOH A 4 504 126 HOH HOH . 
U 6 HOH A 5 505 13 HOH HOH . 
U 6 HOH A 6 506 33 HOH HOH . 
U 6 HOH A 7 507 113 HOH HOH . 
U 6 HOH A 8 508 176 HOH HOH . 
U 6 HOH A 9 509 67 HOH HOH . 
U 6 HOH A 10 510 75 HOH HOH . 
U 6 HOH A 11 511 18 HOH HOH . 
U 6 HOH A 12 512 137 HOH HOH . 
U 6 HOH A 13 513 73 HOH HOH . 
U 6 HOH A 14 514 41 HOH HOH . 
U 6 HOH A 15 515 59 HOH HOH . 
U 6 HOH A 16 516 49 HOH HOH . 
U 6 HOH A 17 517 50 HOH HOH . 
U 6 HOH A 18 518 131 HOH HOH . 
U 6 HOH A 19 519 162 HOH HOH . 
U 6 HOH A 20 520 29 HOH HOH . 
U 6 HOH A 21 521 85 HOH HOH . 
U 6 HOH A 22 522 71 HOH HOH . 
U 6 HOH A 23 523 16 HOH HOH . 
U 6 HOH A 24 524 7 HOH HOH . 
U 6 HOH A 25 525 38 HOH HOH . 
U 6 HOH A 26 526 91 HOH HOH . 
U 6 HOH A 27 527 160 HOH HOH . 
U 6 HOH A 28 528 134 HOH HOH . 
U 6 HOH A 29 529 64 HOH HOH . 
U 6 HOH A 30 530 118 HOH HOH . 
U 6 HOH A 31 531 123 HOH HOH . 
U 6 HOH A 32 532 166 HOH HOH . 
U 6 HOH A 33 533 77 HOH HOH . 
U 6 HOH A 34 534 156 HOH HOH . 
U 6 HOH A 35 535 4 HOH HOH . 
U 6 HOH A 36 536 192 HOH HOH . 
U 6 HOH A 37 537 132 HOH HOH . 
U 6 HOH A 38 538 84 HOH HOH . 
U 6 HOH A 39 539 125 HOH HOH . 
U 6 HOH A 40 540 155 HOH HOH . 
U 6 HOH A 41 541 140 HOH HOH . 
U 6 HOH A 42 542 22 HOH HOH . 
U 6 HOH A 43 543 42 HOH HOH . 
U 6 HOH A 44 544 139 HOH HOH . 
U 6 HOH A 45 545 117 HOH HOH . 
U 6 HOH A 46 546 26 HOH HOH . 
U 6 HOH A 47 547 27 HOH HOH . 
U 6 HOH A 48 548 80 HOH HOH . 
U 6 HOH A 49 549 169 HOH HOH . 
U 6 HOH A 50 550 172 HOH HOH . 
U 6 HOH A 51 551 130 HOH HOH . 
U 6 HOH A 52 552 55 HOH HOH . 
U 6 HOH A 53 553 174 HOH HOH . 
U 6 HOH A 54 554 72 HOH HOH . 
U 6 HOH A 55 555 15 HOH HOH . 
U 6 HOH A 56 556 195 HOH HOH . 
U 6 HOH A 57 557 81 HOH HOH . 
U 6 HOH A 58 558 189 HOH HOH . 
U 6 HOH A 59 559 69 HOH HOH . 
U 6 HOH A 60 560 154 HOH HOH . 
U 6 HOH A 61 561 193 HOH HOH . 
U 6 HOH A 62 562 144 HOH HOH . 
U 6 HOH A 63 563 101 HOH HOH . 
U 6 HOH A 64 564 52 HOH HOH . 
U 6 HOH A 65 565 179 HOH HOH . 
U 6 HOH A 66 566 153 HOH HOH . 
V 6 HOH B 1 501 161 HOH HOH . 
V 6 HOH B 2 502 20 HOH HOH . 
V 6 HOH B 3 503 19 HOH HOH . 
V 6 HOH B 4 504 109 HOH HOH . 
V 6 HOH B 5 505 83 HOH HOH . 
V 6 HOH B 6 506 105 HOH HOH . 
V 6 HOH B 7 507 159 HOH HOH . 
V 6 HOH B 8 508 31 HOH HOH . 
V 6 HOH B 9 509 203 HOH HOH . 
V 6 HOH B 10 510 108 HOH HOH . 
V 6 HOH B 11 511 2 HOH HOH . 
V 6 HOH B 12 512 40 HOH HOH . 
V 6 HOH B 13 513 37 HOH HOH . 
V 6 HOH B 14 514 48 HOH HOH . 
V 6 HOH B 15 515 181 HOH HOH . 
V 6 HOH B 16 516 119 HOH HOH . 
V 6 HOH B 17 517 88 HOH HOH . 
V 6 HOH B 18 518 157 HOH HOH . 
V 6 HOH B 19 519 148 HOH HOH . 
V 6 HOH B 20 520 178 HOH HOH . 
V 6 HOH B 21 521 196 HOH HOH . 
V 6 HOH B 22 522 145 HOH HOH . 
V 6 HOH B 23 523 198 HOH HOH . 
V 6 HOH B 24 524 146 HOH HOH . 
V 6 HOH B 25 525 128 HOH HOH . 
V 6 HOH B 26 526 190 HOH HOH . 
V 6 HOH B 27 527 103 HOH HOH . 
V 6 HOH B 28 528 32 HOH HOH . 
V 6 HOH B 29 529 1 HOH HOH . 
V 6 HOH B 30 530 149 HOH HOH . 
V 6 HOH B 31 531 110 HOH HOH . 
V 6 HOH B 32 532 93 HOH HOH . 
V 6 HOH B 33 533 54 HOH HOH . 
V 6 HOH B 34 534 204 HOH HOH . 
V 6 HOH B 35 535 51 HOH HOH . 
V 6 HOH B 36 536 184 HOH HOH . 
V 6 HOH B 37 537 173 HOH HOH . 
V 6 HOH B 38 538 70 HOH HOH . 
V 6 HOH B 39 539 96 HOH HOH . 
V 6 HOH B 40 540 89 HOH HOH . 
V 6 HOH B 41 541 14 HOH HOH . 
V 6 HOH B 42 542 120 HOH HOH . 
V 6 HOH B 43 543 11 HOH HOH . 
V 6 HOH B 44 544 114 HOH HOH . 
V 6 HOH B 45 545 168 HOH HOH . 
V 6 HOH B 46 546 122 HOH HOH . 
V 6 HOH B 47 547 53 HOH HOH . 
V 6 HOH B 48 548 127 HOH HOH . 
V 6 HOH B 49 549 164 HOH HOH . 
V 6 HOH B 50 550 97 HOH HOH . 
V 6 HOH B 51 551 82 HOH HOH . 
V 6 HOH B 52 552 163 HOH HOH . 
V 6 HOH B 53 553 56 HOH HOH . 
V 6 HOH B 54 554 34 HOH HOH . 
V 6 HOH B 55 555 65 HOH HOH . 
V 6 HOH B 56 556 62 HOH HOH . 
V 6 HOH B 57 557 58 HOH HOH . 
V 6 HOH B 58 558 194 HOH HOH . 
V 6 HOH B 59 559 3 HOH HOH . 
V 6 HOH B 60 560 92 HOH HOH . 
V 6 HOH B 61 561 121 HOH HOH . 
V 6 HOH B 62 562 90 HOH HOH . 
V 6 HOH B 63 563 78 HOH HOH . 
V 6 HOH B 64 564 133 HOH HOH . 
V 6 HOH B 65 565 170 HOH HOH . 
V 6 HOH B 66 566 63 HOH HOH . 
V 6 HOH B 67 567 158 HOH HOH . 
V 6 HOH B 68 568 66 HOH HOH . 
V 6 HOH B 69 569 94 HOH HOH . 
V 6 HOH B 70 570 99 HOH HOH . 
V 6 HOH B 71 571 104 HOH HOH . 
V 6 HOH B 72 572 47 HOH HOH . 
V 6 HOH B 73 573 165 HOH HOH . 
V 6 HOH B 74 574 60 HOH HOH . 
V 6 HOH B 75 575 107 HOH HOH . 
V 6 HOH B 76 576 183 HOH HOH . 
V 6 HOH B 77 577 30 HOH HOH . 
V 6 HOH B 78 578 68 HOH HOH . 
V 6 HOH B 79 579 175 HOH HOH . 
V 6 HOH B 80 580 180 HOH HOH . 
V 6 HOH B 81 581 79 HOH HOH . 
V 6 HOH B 82 582 102 HOH HOH . 
V 6 HOH B 83 583 151 HOH HOH . 
V 6 HOH B 84 584 112 HOH HOH . 
V 6 HOH B 85 585 135 HOH HOH . 
V 6 HOH B 86 586 202 HOH HOH . 
V 6 HOH B 87 587 57 HOH HOH . 
V 6 HOH B 88 588 150 HOH HOH . 
V 6 HOH B 89 589 201 HOH HOH . 
V 6 HOH B 90 590 191 HOH HOH . 
V 6 HOH B 91 591 21 HOH HOH . 
V 6 HOH B 92 592 124 HOH HOH . 
V 6 HOH B 93 593 115 HOH HOH . 
V 6 HOH B 94 594 177 HOH HOH . 
V 6 HOH B 95 595 182 HOH HOH . 
V 6 HOH B 96 596 45 HOH HOH . 
V 6 HOH B 97 597 87 HOH HOH . 
V 6 HOH B 98 598 100 HOH HOH . 
V 6 HOH B 99 599 141 HOH HOH . 
V 6 HOH B 100 600 43 HOH HOH . 
V 6 HOH B 101 601 152 HOH HOH . 
V 6 HOH B 102 602 5 HOH HOH . 
V 6 HOH B 103 603 76 HOH HOH . 
V 6 HOH B 104 604 142 HOH HOH . 
V 6 HOH B 105 605 46 HOH HOH . 
V 6 HOH B 106 606 199 HOH HOH . 
V 6 HOH B 107 607 35 HOH HOH . 
V 6 HOH B 108 608 61 HOH HOH . 
V 6 HOH B 109 609 188 HOH HOH . 
V 6 HOH B 110 610 136 HOH HOH . 
V 6 HOH B 111 611 74 HOH HOH . 
V 6 HOH B 112 612 36 HOH HOH . 
V 6 HOH B 113 613 44 HOH HOH . 
V 6 HOH B 114 614 95 HOH HOH . 
V 6 HOH B 115 615 129 HOH HOH . 
V 6 HOH B 116 616 187 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 5 4.715 7.243 -12.233 1 62.02 ? C1 EDO 412 A 1 
HETATM 2 O O1 EDO . . . N 5 5.318 8.358 -11.622 1 48.91 ? O1 EDO 412 A 1 
HETATM 3 C C2 EDO . . . N 5 3.506 7.673 -13.075 1 79.62 ? C2 EDO 412 A 1 
HETATM 4 O O2 EDO . . . N 5 2.938 6.531 -13.692 1 73.03 ? O2 EDO 412 A 1 
HETATM 5 H H11 EDO . . . N 5 4.4 6.545 -11.465 1 64.02 ? H11 EDO 412 A 1 
HETATM 6 H H12 EDO . . . N 5 5.456 6.736 -12.852 1 64.02 ? H12 EDO 412 A 1 
HETATM 7 H HO1 EDO . . . N 5 5.548 8.96 -12.321 1 50.91 ? HO1 EDO 412 A 1 
HETATM 8 H H21 EDO . . . N 5 3.799 8.391 -13.844 1 81.62 ? H21 EDO 412 A 1 
HETATM 9 H H22 EDO . . . N 5 2.758 8.159 -12.445 1 81.62 ? H22 EDO 412 A 1 
HETATM 10 H HO2 EDO . . . N 5 2.657 5.959 -12.977 1 75.03 ? HO2 EDO 412 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#