data_8VT9 # _model_server_result.job_id kD33dVRXjx6cl7wb-5nbyA _model_server_result.datetime_utc '2024-12-30 17:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8VT9 # _exptl.entry_id 8VT9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VT9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 N N N ? 2 W N N ? 2 FA N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 8VT9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CMP A 1 501 500 CMP CMP . F 3 PT5 A 1 502 600 PT5 PT5 . G 4 PCW A 1 503 601 PCW PCW . H 4 PCW A 1 504 602 PCW PCW . I 4 PCW A 1 505 603 PCW PCW . J 4 PCW A 1 506 604 PCW PCW . K 4 PCW A 1 507 605 PCW PCW . L 4 PCW A 1 508 606 PCW PCW . M 4 PCW A 1 509 607 PCW PCW . N 2 CMP B 1 501 500 CMP CMP . O 3 PT5 B 1 502 600 PT5 PT5 . P 4 PCW B 1 503 601 PCW PCW . Q 4 PCW B 1 504 602 PCW PCW . R 4 PCW B 1 505 603 PCW PCW . S 4 PCW B 1 506 604 PCW PCW . T 4 PCW B 1 507 605 PCW PCW . U 4 PCW B 1 508 606 PCW PCW . V 4 PCW B 1 509 607 PCW PCW . W 2 CMP C 1 501 500 CMP CMP . X 3 PT5 C 1 502 600 PT5 PT5 . Y 4 PCW C 1 503 601 PCW PCW . Z 4 PCW C 1 504 602 PCW PCW . AA 4 PCW C 1 505 603 PCW PCW . BA 4 PCW C 1 506 604 PCW PCW . CA 4 PCW C 1 507 605 PCW PCW . DA 4 PCW C 1 508 606 PCW PCW . EA 4 PCW C 1 509 607 PCW PCW . FA 2 CMP D 1 501 500 CMP CMP . GA 3 PT5 D 1 502 600 PT5 PT5 . HA 4 PCW D 1 503 601 PCW PCW . IA 4 PCW D 1 504 602 PCW PCW . JA 4 PCW D 1 505 603 PCW PCW . KA 4 PCW D 1 506 604 PCW PCW . LA 4 PCW D 1 507 605 PCW PCW . MA 4 PCW D 1 508 606 PCW PCW . NA 4 PCW D 1 509 607 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . E 2 119.71 160.626 96.998 1 20 ? P CMP 501 A 1 HETATM 2 O O1P CMP . . . E 2 120.029 160.543 95.563 1 20 -1 O1P CMP 501 A 1 HETATM 3 O O2P CMP . . . E 2 120.609 160 97.964 1 20 ? O2P CMP 501 A 1 HETATM 4 O O5' CMP . . . E 2 119.568 162.149 97.409 1 20 ? O5' CMP 501 A 1 HETATM 5 C C5' CMP . . . E 2 119.145 162.429 98.775 1 20 ? C5' CMP 501 A 1 HETATM 6 C C4' CMP . . . E 2 117.884 161.646 99.018 1 20 ? C4' CMP 501 A 1 HETATM 7 O O4' CMP . . . E 2 116.801 162.453 99.476 1 20 ? O4' CMP 501 A 1 HETATM 8 C C3' CMP . . . E 2 117.349 161.119 97.709 1 20 ? C3' CMP 501 A 1 HETATM 9 O O3' CMP . . . E 2 118.222 160.078 97.224 1 20 ? O3' CMP 501 A 1 HETATM 10 C C2' CMP . . . E 2 115.953 160.705 98.144 1 20 ? C2' CMP 501 A 1 HETATM 11 O O2' CMP . . . E 2 115.91 159.404 98.705 1 20 ? O2' CMP 501 A 1 HETATM 12 C C1' CMP . . . E 2 115.607 161.731 99.221 1 20 ? C1' CMP 501 A 1 HETATM 13 N N9 CMP . . . E 2 114.587 162.682 98.8 1 20 ? N9 CMP 501 A 1 HETATM 14 C C8 CMP . . . E 2 114.729 163.703 97.896 1 20 ? C8 CMP 501 A 1 HETATM 15 N N7 CMP . . . E 2 113.637 164.406 97.733 1 20 ? N7 CMP 501 A 1 HETATM 16 C C5 CMP . . . E 2 112.723 163.823 98.599 1 20 ? C5 CMP 501 A 1 HETATM 17 C C6 CMP . . . E 2 111.379 164.118 98.892 1 20 ? C6 CMP 501 A 1 HETATM 18 N N6 CMP . . . E 2 110.699 165.108 98.323 1 20 ? N6 CMP 501 A 1 HETATM 19 N N1 CMP . . . E 2 110.756 163.338 99.807 1 20 ? N1 CMP 501 A 1 HETATM 20 C C2 CMP . . . E 2 111.446 162.343 100.376 1 20 ? C2 CMP 501 A 1 HETATM 21 N N3 CMP . . . E 2 112.708 161.975 100.179 1 20 ? N3 CMP 501 A 1 HETATM 22 C C4 CMP . . . E 2 113.299 162.763 99.268 1 20 ? C4 CMP 501 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #