data_8VT9
#
_model_server_result.job_id            KaOQuosnGt1YU0ATAxyhxw 
_model_server_result.datetime_utc      '2024-12-21 17:25:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":503}' 
#
_entry.id    8VT9 
#
_exptl.entry_id    8VT9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VT9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 HA N N 
? 4 IA N N 
? 4 JA N N 
? 4 KA N N 
? 4 LA N N 
? 4 MA N N 
? 4 NA N N 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 272 n n 
C1 O3P PCW sing 273 n n 
C1 H11 PCW sing 274 n n 
C1 H12 PCW sing 275 n n 
C2 C3 PCW sing 276 n n 
C2 O2 PCW sing 277 n n 
C2 H2 PCW sing 278 n n 
C3 O3 PCW sing 279 n n 
C3 H31 PCW sing 280 n n 
C3 H32 PCW sing 281 n n 
C4 C5 PCW sing 282 n n 
C4 O4P PCW sing 283 n n 
C4 H41 PCW sing 284 n n 
C4 H42 PCW sing 285 n n 
C5 N PCW sing 286 n n 
C5 H51 PCW sing 287 n n 
C5 H52 PCW sing 288 n n 
C6 N PCW sing 289 n n 
C6 H61 PCW sing 290 n n 
C6 H62 PCW sing 291 n n 
C6 H63 PCW sing 292 n n 
C7 N PCW sing 293 n n 
C7 H71 PCW sing 294 n n 
C7 H72 PCW sing 295 n n 
C7 H73 PCW sing 296 n n 
C8 N PCW sing 297 n n 
C8 H81 PCW sing 298 n n 
C8 H82 PCW sing 299 n n 
C8 H83 PCW sing 300 n n 
C11 C12 PCW sing 301 n n 
C11 O3 PCW sing 302 n n 
C11 O11 PCW doub 303 n n 
C12 C13 PCW sing 304 n n 
C12 H121 PCW sing 305 n n 
C12 H122 PCW sing 306 n n 
C13 C14 PCW sing 307 n n 
C13 H131 PCW sing 308 n n 
C13 H132 PCW sing 309 n n 
C14 C15 PCW sing 310 n n 
C14 H141 PCW sing 311 n n 
C14 H142 PCW sing 312 n n 
C15 C16 PCW sing 313 n n 
C15 H151 PCW sing 314 n n 
C15 H152 PCW sing 315 n n 
C16 C17 PCW sing 316 n n 
C16 H161 PCW sing 317 n n 
C16 H162 PCW sing 318 n n 
C17 C18 PCW sing 319 n n 
C17 H171 PCW sing 320 n n 
C17 H172 PCW sing 321 n n 
C18 C19 PCW sing 322 n n 
C18 H181 PCW sing 323 n n 
C18 H182 PCW sing 324 n n 
C19 C20 PCW doub 325 z n 
C19 H19 PCW sing 326 n n 
C20 C21 PCW sing 327 n n 
C20 H20 PCW sing 328 n n 
C21 C22 PCW sing 329 n n 
C21 H211 PCW sing 330 n n 
C21 H212 PCW sing 331 n n 
C22 C23 PCW sing 332 n n 
C22 H221 PCW sing 333 n n 
C22 H222 PCW sing 334 n n 
C23 C24 PCW sing 335 n n 
C23 H231 PCW sing 336 n n 
C23 H232 PCW sing 337 n n 
C24 C25 PCW sing 338 n n 
C24 H241 PCW sing 339 n n 
C24 H242 PCW sing 340 n n 
C25 C26 PCW sing 341 n n 
C25 H251 PCW sing 342 n n 
C25 H252 PCW sing 343 n n 
C26 C27 PCW sing 344 n n 
C26 H261 PCW sing 345 n n 
C26 H262 PCW sing 346 n n 
C27 C28 PCW sing 347 n n 
C27 H271 PCW sing 348 n n 
C27 H272 PCW sing 349 n n 
C28 H281 PCW sing 350 n n 
C28 H282 PCW sing 351 n n 
C28 H283 PCW sing 352 n n 
C31 C32 PCW sing 353 n n 
C31 O2 PCW sing 354 n n 
C31 O31 PCW doub 355 n n 
C32 C33 PCW sing 356 n n 
C32 H321 PCW sing 357 n n 
C32 H322 PCW sing 358 n n 
C33 C34 PCW sing 359 n n 
C33 H331 PCW sing 360 n n 
C33 H332 PCW sing 361 n n 
C34 C35 PCW sing 362 n n 
C34 H341 PCW sing 363 n n 
C34 H342 PCW sing 364 n n 
C35 C36 PCW sing 365 n n 
C35 H351 PCW sing 366 n n 
C35 H352 PCW sing 367 n n 
C36 C37 PCW sing 368 n n 
C36 H361 PCW sing 369 n n 
C36 H362 PCW sing 370 n n 
C37 C38 PCW sing 371 n n 
C37 H371 PCW sing 372 n n 
C37 H372 PCW sing 373 n n 
C38 C39 PCW sing 374 n n 
C38 H381 PCW sing 375 n n 
C38 H382 PCW sing 376 n n 
C39 C40 PCW doub 377 z n 
C39 H39 PCW sing 378 n n 
C40 C41 PCW sing 379 n n 
C40 H40 PCW sing 380 n n 
C41 C42 PCW sing 381 n n 
C41 H411 PCW sing 382 n n 
C41 H412 PCW sing 383 n n 
C42 C43 PCW sing 384 n n 
C42 H421 PCW sing 385 n n 
C42 H422 PCW sing 386 n n 
C43 C44 PCW sing 387 n n 
C43 H431 PCW sing 388 n n 
C43 H432 PCW sing 389 n n 
C44 C45 PCW sing 390 n n 
C44 H441 PCW sing 391 n n 
C44 H442 PCW sing 392 n n 
C45 C46 PCW sing 393 n n 
C45 H451 PCW sing 394 n n 
C45 H452 PCW sing 395 n n 
C46 C47 PCW sing 396 n n 
C46 H461 PCW sing 397 n n 
C46 H462 PCW sing 398 n n 
C47 C48 PCW sing 399 n n 
C47 H471 PCW sing 400 n n 
C47 H472 PCW sing 401 n n 
C48 H481 PCW sing 402 n n 
C48 H482 PCW sing 403 n n 
C48 H483 PCW sing 404 n n 
O1P P PCW sing 405 n n 
O1P H1P PCW sing 406 n n 
O2P P PCW doub 407 n n 
O3P P PCW sing 408 n n 
O4P P PCW sing 409 n n 
#
_atom_sites.entry_id                     8VT9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CMP A 1 501 500 CMP CMP . 
F 3 PT5 A 1 502 600 PT5 PT5 . 
G 4 PCW A 1 503 601 PCW PCW . 
H 4 PCW A 1 504 602 PCW PCW . 
I 4 PCW A 1 505 603 PCW PCW . 
J 4 PCW A 1 506 604 PCW PCW . 
K 4 PCW A 1 507 605 PCW PCW . 
L 4 PCW A 1 508 606 PCW PCW . 
M 4 PCW A 1 509 607 PCW PCW . 
N 2 CMP B 1 501 500 CMP CMP . 
O 3 PT5 B 1 502 600 PT5 PT5 . 
P 4 PCW B 1 503 601 PCW PCW . 
Q 4 PCW B 1 504 602 PCW PCW . 
R 4 PCW B 1 505 603 PCW PCW . 
S 4 PCW B 1 506 604 PCW PCW . 
T 4 PCW B 1 507 605 PCW PCW . 
U 4 PCW B 1 508 606 PCW PCW . 
V 4 PCW B 1 509 607 PCW PCW . 
W 2 CMP C 1 501 500 CMP CMP . 
X 3 PT5 C 1 502 600 PT5 PT5 . 
Y 4 PCW C 1 503 601 PCW PCW . 
Z 4 PCW C 1 504 602 PCW PCW . 
AA 4 PCW C 1 505 603 PCW PCW . 
BA 4 PCW C 1 506 604 PCW PCW . 
CA 4 PCW C 1 507 605 PCW PCW . 
DA 4 PCW C 1 508 606 PCW PCW . 
EA 4 PCW C 1 509 607 PCW PCW . 
FA 2 CMP D 1 501 500 CMP CMP . 
GA 3 PT5 D 1 502 600 PT5 PT5 . 
HA 4 PCW D 1 503 601 PCW PCW . 
IA 4 PCW D 1 504 602 PCW PCW . 
JA 4 PCW D 1 505 603 PCW PCW . 
KA 4 PCW D 1 506 604 PCW PCW . 
LA 4 PCW D 1 507 605 PCW PCW . 
MA 4 PCW D 1 508 606 PCW PCW . 
NA 4 PCW D 1 509 607 PCW PCW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . HA 4 154.085 134.407 149.185 1 87.34 ? C1 PCW 503 D 1 
HETATM 2 C C2 PCW . . . HA 4 154.657 135.788 148.831 1 87.34 ? C2 PCW 503 D 1 
HETATM 3 C C3 PCW . . . HA 4 155.577 136.289 149.969 1 87.34 ? C3 PCW 503 D 1 
HETATM 4 C C11 PCW . . . HA 4 155.608 135.105 152.032 1 87.34 ? C11 PCW 503 D 1 
HETATM 5 C C12 PCW . . . HA 4 156.272 136.001 153.112 1 87.34 ? C12 PCW 503 D 1 
HETATM 6 C C13 PCW . . . HA 4 155.274 136.992 153.784 1 87.34 ? C13 PCW 503 D 1 
HETATM 7 C C14 PCW . . . HA 4 156.011 138.021 154.676 1 87.34 ? C14 PCW 503 D 1 
HETATM 8 C C15 PCW . . . HA 4 155.478 139.455 154.509 1 87.34 ? C15 PCW 503 D 1 
HETATM 9 C C16 PCW . . . HA 4 156.158 140.441 155.487 1 87.34 ? C16 PCW 503 D 1 
HETATM 10 C C17 PCW . . . HA 4 155.381 141.762 155.61 1 87.34 ? C17 PCW 503 D 1 
HETATM 11 C C18 PCW . . . HA 4 156.132 142.826 156.437 1 87.34 ? C18 PCW 503 D 1 
HETATM 12 C C19 PCW . . . HA 4 156.21 142.36 157.915 1 87.34 ? C19 PCW 503 D 1 
HETATM 13 C C31 PCW . . . HA 4 154.68 136.258 146.554 1 87.34 ? C31 PCW 503 D 1 
HETATM 14 C C32 PCW . . . HA 4 154.807 137.77 146.246 1 87.34 ? C32 PCW 503 D 1 
HETATM 15 C C33 PCW . . . HA 4 153.452 138.355 145.772 1 87.34 ? C33 PCW 503 D 1 
HETATM 16 C C34 PCW . . . HA 4 152.956 139.498 146.689 1 87.34 ? C34 PCW 503 D 1 
HETATM 17 C C35 PCW . . . HA 4 154.128 140.339 147.273 1 87.34 ? C35 PCW 503 D 1 
HETATM 18 C C36 PCW . . . HA 4 154.301 140.113 148.785 1 87.34 ? C36 PCW 503 D 1 
HETATM 19 C C37 PCW . . . HA 4 154.101 141.42 149.598 1 87.34 ? C37 PCW 503 D 1 
HETATM 20 C C38 PCW . . . HA 4 153.397 141.155 150.954 1 87.34 ? C38 PCW 503 D 1 
HETATM 21 C C39 PCW . . . HA 4 153.56 142.397 151.861 1 87.34 ? C39 PCW 503 D 1 
HETATM 22 C C40 PCW . . . HA 4 152.621 142.652 152.796 1 87.34 ? C40 PCW 503 D 1 
HETATM 23 C C41 PCW . . . HA 4 152.749 143.89 153.728 1 87.34 ? C41 PCW 503 D 1 
HETATM 24 C C42 PCW . . . HA 4 151.516 143.912 154.676 1 87.34 ? C42 PCW 503 D 1 
HETATM 25 C C43 PCW . . . HA 4 151.732 144.808 155.937 1 87.34 ? C43 PCW 503 D 1 
HETATM 26 C C44 PCW . . . HA 4 150.64 144.519 157.022 1 87.34 ? C44 PCW 503 D 1 
HETATM 27 C C45 PCW . . . HA 4 150.122 145.817 157.726 1 87.34 ? C45 PCW 503 D 1 
HETATM 28 C C46 PCW . . . HA 4 148.628 145.661 158.166 1 87.34 ? C46 PCW 503 D 1 
HETATM 29 C C47 PCW . . . HA 4 147.906 147.017 158.35 1 87.34 ? C47 PCW 503 D 1 
HETATM 30 O O2 PCW . . . HA 4 155.392 135.715 147.652 1 87.34 ? O2 PCW 503 D 1 
HETATM 31 O O3 PCW . . . HA 4 156.06 135.156 150.689 1 87.34 ? O3 PCW 503 D 1 
HETATM 32 O O11 PCW . . . HA 4 154.725 134.381 152.325 1 87.34 ? O11 PCW 503 D 1 
HETATM 33 O O31 PCW . . . HA 4 153.982 135.567 145.894 1 87.34 ? O31 PCW 503 D 1 
HETATM 34 O O1P PCW . . . HA 4 155.779 132.239 150.043 1 87.34 ? O1P PCW 503 D 1 
HETATM 35 O O2P PCW . . . HA 4 156.185 131.591 147.68 1 87.34 -1 O2P PCW 503 D 1 
HETATM 36 O O3P PCW . . . HA 4 154.446 133.461 148.186 1 87.34 ? O3P PCW 503 D 1 
HETATM 37 O O4P PCW . . . HA 4 153.98 130.845 148.799 1 87.34 ? O4P PCW 503 D 1 
HETATM 38 P P PCW . . . HA 4 155.144 132.029 148.691 1 87.34 ? P PCW 503 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    96 
_model_server_stats.query_time_ms           1010 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           38 
#