data_8VTC # _model_server_result.job_id 6phSSJcK68JcrF5joJnoUA _model_server_result.datetime_utc '2025-07-27 19:04:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8VTC # _exptl.entry_id 8VTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.318 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETHOPRIM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VTC _cell.length_a 70.251 _cell.length_b 70.251 _cell.length_c 73.511 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 N4 O3' _chem_comp.formula_weight 290.318 _chem_comp.id TOP _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETHOPRIM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 TOP doub 388 n y C1 C8 TOP sing 389 n y C1 H1 TOP sing 390 n n N2 C3 TOP sing 391 n y C3 N4 TOP sing 392 n n C3 N5 TOP doub 393 n y N4 HN41 TOP sing 394 n n N4 HN42 TOP sing 395 n n N5 C6 TOP sing 396 n y C6 N7 TOP sing 397 n n C6 C8 TOP doub 398 n y N7 HN71 TOP sing 399 n n N7 HN72 TOP sing 400 n n C8 C9 TOP sing 401 n n C9 C10 TOP sing 402 n n C9 H91 TOP sing 403 n n C9 H92 TOP sing 404 n n C10 C11 TOP doub 405 n y C10 C21 TOP sing 406 n y C11 C12 TOP sing 407 n y C11 H11 TOP sing 408 n n C12 O13 TOP sing 409 n n C12 C15 TOP doub 410 n y O13 C14 TOP sing 411 n n C14 H141 TOP sing 412 n n C14 H142 TOP sing 413 n n C14 H143 TOP sing 414 n n C15 O16 TOP sing 415 n n C15 C18 TOP sing 416 n y O16 C17 TOP sing 417 n n C17 H171 TOP sing 418 n n C17 H172 TOP sing 419 n n C17 H173 TOP sing 420 n n C18 O19 TOP sing 421 n n C18 C21 TOP doub 422 n y O19 C20 TOP sing 423 n n C20 H201 TOP sing 424 n n C20 H202 TOP sing 425 n n C20 H203 TOP sing 426 n n C21 H21 TOP sing 427 n n # _atom_sites.entry_id 8VTC _atom_sites.fract_transf_matrix[1][1] 0.014235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 201 1168 NDP NDP . C 3 TOP A 1 202 1169 TOP TOP . D 4 CL A 1 203 1 CL CL . E 5 HOH A 1 301 22 HOH HOH . E 5 HOH A 2 302 24 HOH HOH . E 5 HOH A 3 303 30 HOH HOH . E 5 HOH A 4 304 40 HOH HOH . E 5 HOH A 5 305 8 HOH HOH . E 5 HOH A 6 306 10 HOH HOH . E 5 HOH A 7 307 15 HOH HOH . E 5 HOH A 8 308 48 HOH HOH . E 5 HOH A 9 309 28 HOH HOH . E 5 HOH A 10 310 36 HOH HOH . E 5 HOH A 11 311 19 HOH HOH . E 5 HOH A 12 312 37 HOH HOH . E 5 HOH A 13 313 7 HOH HOH . E 5 HOH A 14 314 1 HOH HOH . E 5 HOH A 15 315 2 HOH HOH . E 5 HOH A 16 316 5 HOH HOH . E 5 HOH A 17 317 39 HOH HOH . E 5 HOH A 18 318 46 HOH HOH . E 5 HOH A 19 319 26 HOH HOH . E 5 HOH A 20 320 31 HOH HOH . E 5 HOH A 21 321 20 HOH HOH . E 5 HOH A 22 322 12 HOH HOH . E 5 HOH A 23 323 9 HOH HOH . E 5 HOH A 24 324 4 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 17 HOH HOH . E 5 HOH A 27 327 16 HOH HOH . E 5 HOH A 28 328 44 HOH HOH . E 5 HOH A 29 329 34 HOH HOH . E 5 HOH A 30 330 3 HOH HOH . E 5 HOH A 31 331 21 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 47 HOH HOH . E 5 HOH A 34 334 45 HOH HOH . E 5 HOH A 35 335 11 HOH HOH . E 5 HOH A 36 336 23 HOH HOH . E 5 HOH A 37 337 49 HOH HOH . E 5 HOH A 38 338 35 HOH HOH . E 5 HOH A 39 339 33 HOH HOH . E 5 HOH A 40 340 43 HOH HOH . E 5 HOH A 41 341 18 HOH HOH . E 5 HOH A 42 342 29 HOH HOH . E 5 HOH A 43 343 13 HOH HOH . E 5 HOH A 44 344 27 HOH HOH . E 5 HOH A 45 345 38 HOH HOH . E 5 HOH A 46 346 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOP . . . C 3 -18.559 22.244 -5.735 1 29.42 ? C1 TOP 202 A 1 HETATM 2 N N2 TOP . . . C 3 -17.784 22.364 -6.828 1 29.41 ? N2 TOP 202 A 1 HETATM 3 C C3 TOP . . . C 3 -16.774 21.469 -6.983 1 28.47 ? C3 TOP 202 A 1 HETATM 4 N N4 TOP . . . C 3 -16.04 21.541 -8.097 1 27.66 ? N4 TOP 202 A 1 HETATM 5 N N5 TOP . . . C 3 -16.448 20.522 -6.081 1 27.02 ? N5 TOP 202 A 1 HETATM 6 C C6 TOP . . . C 3 -17.213 20.453 -4.97 1 27.88 ? C6 TOP 202 A 1 HETATM 7 N N7 TOP . . . C 3 -16.854 19.539 -4.071 1 29.22 ? N7 TOP 202 A 1 HETATM 8 C C8 TOP . . . C 3 -18.326 21.304 -4.746 1 28.9 ? C8 TOP 202 A 1 HETATM 9 C C9 TOP . . . C 3 -19.206 21.161 -3.509 1 31.27 ? C9 TOP 202 A 1 HETATM 10 C C10 TOP . . . C 3 -20.349 22.147 -3.339 1 33.07 ? C10 TOP 202 A 1 HETATM 11 C C11 TOP . . . C 3 -21.503 22.061 -4.122 1 32.7 ? C11 TOP 202 A 1 HETATM 12 C C12 TOP . . . C 3 -22.526 22.986 -3.949 1 34.6 ? C12 TOP 202 A 1 HETATM 13 O O13 TOP . . . C 3 -23.68 23.066 -4.668 1 34.41 ? O13 TOP 202 A 1 HETATM 14 C C14 TOP . . . C 3 -23.946 22.049 -5.62 1 35.44 ? C14 TOP 202 A 1 HETATM 15 C C15 TOP . . . C 3 -22.368 24.068 -3.091 1 37.88 ? C15 TOP 202 A 1 HETATM 16 O O16 TOP . . . C 3 -23.436 24.923 -2.974 1 41.28 ? O16 TOP 202 A 1 HETATM 17 C C17 TOP . . . C 3 -23.139 26.28 -3.246 1 45.5 ? C17 TOP 202 A 1 HETATM 18 C C18 TOP . . . C 3 -21.242 24.127 -2.264 1 37.12 ? C18 TOP 202 A 1 HETATM 19 O O19 TOP . . . C 3 -21.204 25.17 -1.379 1 40.32 ? O19 TOP 202 A 1 HETATM 20 C C20 TOP . . . C 3 -20.21 25.153 -0.369 1 38.95 ? C20 TOP 202 A 1 HETATM 21 C C21 TOP . . . C 3 -20.237 23.18 -2.408 1 34.37 ? C21 TOP 202 A 1 HETATM 22 H H1 TOP . . . C 3 -19.291 22.824 -5.642 1 31.59 ? H1 TOP 202 A 1 HETATM 23 H HN41 TOP . . . C 3 -15.38 20.977 -8.222 1 29.62 ? HN41 TOP 202 A 1 HETATM 24 H HN42 TOP . . . C 3 -16.22 22.149 -8.699 1 29.98 ? HN42 TOP 202 A 1 HETATM 25 H HN71 TOP . . . C 3 -16.151 19.038 -4.215 1 30.03 ? HN71 TOP 202 A 1 HETATM 26 H HN72 TOP . . . C 3 -17.319 19.44 -3.336 1 30.59 ? HN72 TOP 202 A 1 HETATM 27 H H91 TOP . . . C 3 -18.625 21.223 -2.72 1 31.54 ? H91 TOP 202 A 1 HETATM 28 H H92 TOP . . . C 3 -19.584 20.254 -3.521 1 31.71 ? H92 TOP 202 A 1 HETATM 29 H H11 TOP . . . C 3 -21.59 21.372 -4.762 1 33.08 ? H11 TOP 202 A 1 HETATM 30 H H141 TOP . . . C 3 -23.251 22.05 -6.298 1 34.61 ? H141 TOP 202 A 1 HETATM 31 H H142 TOP . . . C 3 -24.806 22.217 -6.038 1 36.43 ? H142 TOP 202 A 1 HETATM 32 H H143 TOP . . . C 3 -23.965 21.186 -5.175 1 35.3 ? H143 TOP 202 A 1 HETATM 33 H H171 TOP . . . C 3 -22.516 26.619 -2.584 1 37.2 ? H171 TOP 202 A 1 HETATM 34 H H172 TOP . . . C 3 -23.959 26.8 -3.212 1 38.65 ? H172 TOP 202 A 1 HETATM 35 H H173 TOP . . . C 3 -22.745 26.354 -4.131 1 36.63 ? H173 TOP 202 A 1 HETATM 36 H H201 TOP . . . C 3 -20.294 24.34 0.156 1 35.24 ? H201 TOP 202 A 1 HETATM 37 H H202 TOP . . . C 3 -20.326 25.924 0.208 1 36.32 ? H202 TOP 202 A 1 HETATM 38 H H203 TOP . . . C 3 -19.33 25.187 -0.777 1 34.48 ? H203 TOP 202 A 1 HETATM 39 H H21 TOP . . . C 3 -19.451 23.252 -1.889 1 32.98 ? H21 TOP 202 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 72 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1157 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #