data_8VTJ
#
_model_server_result.job_id            jWvAqhuZov6SWKbVJ4aPtw 
_model_server_result.datetime_utc      '2025-01-10 19:53:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vtj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":403}' 
#
_entry.id    8VTJ 
#
_exptl.entry_id    8VTJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8VTJ 
_cell.length_a            141.29 
_cell.length_b            141.29 
_cell.length_c            187.18 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VTJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
? 8 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C LEU 208 M LEU 209 1_555 C N 9IJ 209 M 9IJ 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 C C 9IJ 209 M 9IJ 210 1_555 C N GLY 210 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc3 C NE2 HIS 218 M HIS 219 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 C OE1 GLU 233 M GLU 234 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc5 C OE2 GLU 233 M GLU 234 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc6 C NE2 HIS 265 M HIS 266 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 746 n n 
N1 CM1 LDA sing 747 n n 
N1 CM2 LDA sing 748 n n 
N1 C1 LDA sing 749 n n 
CM1 HM11 LDA sing 750 n n 
CM1 HM12 LDA sing 751 n n 
CM1 HM13 LDA sing 752 n n 
CM2 HM21 LDA sing 753 n n 
CM2 HM22 LDA sing 754 n n 
CM2 HM23 LDA sing 755 n n 
C1 C2 LDA sing 756 n n 
C1 H11 LDA sing 757 n n 
C1 H12 LDA sing 758 n n 
C2 C3 LDA sing 759 n n 
C2 H21 LDA sing 760 n n 
C2 H22 LDA sing 761 n n 
C3 C4 LDA sing 762 n n 
C3 H31 LDA sing 763 n n 
C3 H32 LDA sing 764 n n 
C4 C5 LDA sing 765 n n 
C4 H41 LDA sing 766 n n 
C4 H42 LDA sing 767 n n 
C5 C6 LDA sing 768 n n 
C5 H51 LDA sing 769 n n 
C5 H52 LDA sing 770 n n 
C6 C7 LDA sing 771 n n 
C6 H61 LDA sing 772 n n 
C6 H62 LDA sing 773 n n 
C7 C8 LDA sing 774 n n 
C7 H71 LDA sing 775 n n 
C7 H72 LDA sing 776 n n 
C8 C9 LDA sing 777 n n 
C8 H81 LDA sing 778 n n 
C8 H82 LDA sing 779 n n 
C9 C10 LDA sing 780 n n 
C9 H91 LDA sing 781 n n 
C9 H92 LDA sing 782 n n 
C10 C11 LDA sing 783 n n 
C10 H101 LDA sing 784 n n 
C10 H102 LDA sing 785 n n 
C11 C12 LDA sing 786 n n 
C11 H111 LDA sing 787 n n 
C11 H112 LDA sing 788 n n 
C12 H121 LDA sing 789 n n 
C12 H122 LDA sing 790 n n 
C12 H123 LDA sing 791 n n 
#
_atom_sites.entry_id                     8VTJ 
_atom_sites.fract_transf_matrix[1][1]    0.007078 
_atom_sites.fract_transf_matrix[1][2]    0.004086 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008173 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 301 301 BCL BCL . 
E 5 BPH L 1 302 302 BPH BPH . 
F 6 U10 L 1 303 303 U10 U10 . 
G 4 BCL L 1 304 304 BCL BCL . 
H 7 CL L 1 305 306 CL CL . 
I 4 BCL M 1 401 401 BCL BCL . 
J 8 LDA M 1 402 402 LDA LDA . 
K 8 LDA M 1 403 403 LDA LDA . 
L 8 LDA M 1 404 405 LDA LDA . 
M 9 FE M 1 405 406 FE FE . 
N 5 BPH M 1 406 407 BPH BPH . 
O 10 SPO M 1 407 409 SPO SPO . 
P 11 CDL M 1 408 410 CDL CDL . 
Q 4 BCL M 1 409 305 BCL BCL . 
R 12 HOH H 1 301 99 HOH HOH . 
R 12 HOH H 2 302 33 HOH HOH . 
R 12 HOH H 3 303 51 HOH HOH . 
R 12 HOH H 4 304 17 HOH HOH . 
R 12 HOH H 5 305 103 HOH HOH . 
R 12 HOH H 6 306 114 HOH HOH . 
R 12 HOH H 7 307 19 HOH HOH . 
R 12 HOH H 8 308 78 HOH HOH . 
R 12 HOH H 9 309 108 HOH HOH . 
R 12 HOH H 10 310 122 HOH HOH . 
R 12 HOH H 11 311 123 HOH HOH . 
R 12 HOH H 12 312 71 HOH HOH . 
R 12 HOH H 13 313 34 HOH HOH . 
R 12 HOH H 14 314 74 HOH HOH . 
R 12 HOH H 15 315 11 HOH HOH . 
R 12 HOH H 16 316 121 HOH HOH . 
R 12 HOH H 17 317 32 HOH HOH . 
R 12 HOH H 18 318 31 HOH HOH . 
R 12 HOH H 19 319 29 HOH HOH . 
R 12 HOH H 20 320 25 HOH HOH . 
R 12 HOH H 21 321 27 HOH HOH . 
R 12 HOH H 22 322 109 HOH HOH . 
R 12 HOH H 23 323 8 HOH HOH . 
R 12 HOH H 24 324 119 HOH HOH . 
R 12 HOH H 25 325 97 HOH HOH . 
R 12 HOH H 26 326 112 HOH HOH . 
R 12 HOH H 27 327 72 HOH HOH . 
R 12 HOH H 28 328 53 HOH HOH . 
R 12 HOH H 29 329 117 HOH HOH . 
R 12 HOH H 30 330 30 HOH HOH . 
R 12 HOH H 31 331 96 HOH HOH . 
R 12 HOH H 32 332 116 HOH HOH . 
R 12 HOH H 33 333 9 HOH HOH . 
R 12 HOH H 34 334 115 HOH HOH . 
R 12 HOH H 35 335 61 HOH HOH . 
R 12 HOH H 36 336 100 HOH HOH . 
R 12 HOH H 37 337 5 HOH HOH . 
R 12 HOH H 38 338 120 HOH HOH . 
R 12 HOH H 39 339 102 HOH HOH . 
R 12 HOH H 40 340 106 HOH HOH . 
R 12 HOH H 41 341 118 HOH HOH . 
R 12 HOH H 42 342 98 HOH HOH . 
R 12 HOH H 43 343 107 HOH HOH . 
R 12 HOH H 44 344 68 HOH HOH . 
R 12 HOH H 45 345 110 HOH HOH . 
R 12 HOH H 46 346 75 HOH HOH . 
R 12 HOH H 47 347 113 HOH HOH . 
R 12 HOH H 48 348 73 HOH HOH . 
R 12 HOH H 49 349 66 HOH HOH . 
R 12 HOH H 50 350 95 HOH HOH . 
R 12 HOH H 51 351 104 HOH HOH . 
R 12 HOH H 52 352 101 HOH HOH . 
S 12 HOH L 1 401 26 HOH HOH . 
S 12 HOH L 2 402 4 HOH HOH . 
S 12 HOH L 3 403 130 HOH HOH . 
S 12 HOH L 4 404 10 HOH HOH . 
S 12 HOH L 5 405 15 HOH HOH . 
S 12 HOH L 6 406 7 HOH HOH . 
S 12 HOH L 7 407 3 HOH HOH . 
S 12 HOH L 8 408 2 HOH HOH . 
S 12 HOH L 9 409 126 HOH HOH . 
S 12 HOH L 10 410 125 HOH HOH . 
S 12 HOH L 11 411 124 HOH HOH . 
S 12 HOH L 12 412 105 HOH HOH . 
S 12 HOH L 13 413 6 HOH HOH . 
S 12 HOH L 14 414 138 HOH HOH . 
S 12 HOH L 15 415 139 HOH HOH . 
S 12 HOH L 16 416 50 HOH HOH . 
S 12 HOH L 17 417 128 HOH HOH . 
S 12 HOH L 18 418 131 HOH HOH . 
S 12 HOH L 19 419 129 HOH HOH . 
S 12 HOH L 20 420 127 HOH HOH . 
S 12 HOH L 21 421 133 HOH HOH . 
S 12 HOH L 22 422 132 HOH HOH . 
S 12 HOH L 23 423 46 HOH HOH . 
S 12 HOH L 24 424 134 HOH HOH . 
S 12 HOH L 25 425 94 HOH HOH . 
S 12 HOH L 26 426 24 HOH HOH . 
S 12 HOH L 27 427 135 HOH HOH . 
S 12 HOH L 28 428 38 HOH HOH . 
S 12 HOH L 29 429 60 HOH HOH . 
T 12 HOH M 1 501 140 HOH HOH . 
T 12 HOH M 2 502 13 HOH HOH . 
T 12 HOH M 3 503 93 HOH HOH . 
T 12 HOH M 4 504 49 HOH HOH . 
T 12 HOH M 5 505 84 HOH HOH . 
T 12 HOH M 6 506 146 HOH HOH . 
T 12 HOH M 7 507 145 HOH HOH . 
T 12 HOH M 8 508 36 HOH HOH . 
T 12 HOH M 9 509 18 HOH HOH . 
T 12 HOH M 10 510 144 HOH HOH . 
T 12 HOH M 11 511 92 HOH HOH . 
T 12 HOH M 12 512 14 HOH HOH . 
T 12 HOH M 13 513 47 HOH HOH . 
T 12 HOH M 14 514 85 HOH HOH . 
T 12 HOH M 15 515 64 HOH HOH . 
T 12 HOH M 16 516 141 HOH HOH . 
T 12 HOH M 17 517 1 HOH HOH . 
T 12 HOH M 18 518 16 HOH HOH . 
T 12 HOH M 19 519 59 HOH HOH . 
T 12 HOH M 20 520 20 HOH HOH . 
T 12 HOH M 21 521 91 HOH HOH . 
T 12 HOH M 22 522 142 HOH HOH . 
T 12 HOH M 23 523 23 HOH HOH . 
T 12 HOH M 24 524 143 HOH HOH . 
T 12 HOH M 25 525 137 HOH HOH . 
T 12 HOH M 26 526 136 HOH HOH . 
T 12 HOH M 27 527 87 HOH HOH . 
T 12 HOH M 28 528 35 HOH HOH . 
T 12 HOH M 29 529 88 HOH HOH . 
T 12 HOH M 30 530 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . K 8 -47.248 61.608 -9.469 1 90.59 ? N1 LDA 403 M 1 
HETATM 2 O O1 LDA . . . K 8 -47.207 62.519 -8.59 1 81.1 ? O1 LDA 403 M 1 
HETATM 3 C CM1 LDA . . . K 8 -48.645 61.135 -9.554 1 97.65 ? CM1 LDA 403 M 1 
HETATM 4 C CM2 LDA . . . K 8 -46.801 62.136 -10.776 1 86.33 ? CM2 LDA 403 M 1 
HETATM 5 C C1 LDA . . . K 8 -46.375 60.488 -9.111 1 80.96 ? C1 LDA 403 M 1 
HETATM 6 C C2 LDA . . . K 8 -46.708 59.265 -9.972 1 77.23 ? C2 LDA 403 M 1 
HETATM 7 C C3 LDA . . . K 8 -45.421 58.572 -10.416 1 76.07 ? C3 LDA 403 M 1 
HETATM 8 C C4 LDA . . . K 8 -45.369 57.092 -10.026 1 78.02 ? C4 LDA 403 M 1 
HETATM 9 C C5 LDA . . . K 8 -44.125 56.373 -10.564 1 75.78 ? C5 LDA 403 M 1 
HETATM 10 C C6 LDA . . . K 8 -44.215 54.864 -10.318 1 80.62 ? C6 LDA 403 M 1 
HETATM 11 C C7 LDA . . . K 8 -42.931 54.239 -9.768 1 81.07 ? C7 LDA 403 M 1 
HETATM 12 C C8 LDA . . . K 8 -43.064 52.722 -9.574 1 88.31 ? C8 LDA 403 M 1 
HETATM 13 C C9 LDA . . . K 8 -44.398 52.305 -8.931 1 87.33 ? C9 LDA 403 M 1 
HETATM 14 C C10 LDA . . . K 8 -45.029 51.035 -9.529 1 89.07 ? C10 LDA 403 M 1 
HETATM 15 C C11 LDA . . . K 8 -46.243 51.316 -10.424 1 91.49 ? C11 LDA 403 M 1 
HETATM 16 C C12 LDA . . . K 8 -47.485 50.52 -10.019 1 89.84 ? C12 LDA 403 M 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#