data_8VTJ # _model_server_result.job_id M2DPyNQCNfDhts16HPSPLg _model_server_result.datetime_utc '2025-01-10 19:56:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vtj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":405}' # _entry.id 8VTJ # _exptl.entry_id 8VTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VTJ _cell.length_a 141.29 _cell.length_b 141.29 _cell.length_c 187.18 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LEU 208 M LEU 209 1_555 C N 9IJ 209 M 9IJ 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 C C 9IJ 209 M 9IJ 210 1_555 C N GLY 210 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 C NE2 HIS 218 M HIS 219 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc4 C OE1 GLU 233 M GLU 234 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 C OE2 GLU 233 M GLU 234 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 C NE2 HIS 265 M HIS 266 1_555 M FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VTJ _atom_sites.fract_transf_matrix[1][1] 0.007078 _atom_sites.fract_transf_matrix[1][2] 0.004086 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 301 301 BCL BCL . E 5 BPH L 1 302 302 BPH BPH . F 6 U10 L 1 303 303 U10 U10 . G 4 BCL L 1 304 304 BCL BCL . H 7 CL L 1 305 306 CL CL . I 4 BCL M 1 401 401 BCL BCL . J 8 LDA M 1 402 402 LDA LDA . K 8 LDA M 1 403 403 LDA LDA . L 8 LDA M 1 404 405 LDA LDA . M 9 FE M 1 405 406 FE FE . N 5 BPH M 1 406 407 BPH BPH . O 10 SPO M 1 407 409 SPO SPO . P 11 CDL M 1 408 410 CDL CDL . Q 4 BCL M 1 409 305 BCL BCL . R 12 HOH H 1 301 99 HOH HOH . R 12 HOH H 2 302 33 HOH HOH . R 12 HOH H 3 303 51 HOH HOH . R 12 HOH H 4 304 17 HOH HOH . R 12 HOH H 5 305 103 HOH HOH . R 12 HOH H 6 306 114 HOH HOH . R 12 HOH H 7 307 19 HOH HOH . R 12 HOH H 8 308 78 HOH HOH . R 12 HOH H 9 309 108 HOH HOH . R 12 HOH H 10 310 122 HOH HOH . R 12 HOH H 11 311 123 HOH HOH . R 12 HOH H 12 312 71 HOH HOH . R 12 HOH H 13 313 34 HOH HOH . R 12 HOH H 14 314 74 HOH HOH . R 12 HOH H 15 315 11 HOH HOH . R 12 HOH H 16 316 121 HOH HOH . R 12 HOH H 17 317 32 HOH HOH . R 12 HOH H 18 318 31 HOH HOH . R 12 HOH H 19 319 29 HOH HOH . R 12 HOH H 20 320 25 HOH HOH . R 12 HOH H 21 321 27 HOH HOH . R 12 HOH H 22 322 109 HOH HOH . R 12 HOH H 23 323 8 HOH HOH . R 12 HOH H 24 324 119 HOH HOH . R 12 HOH H 25 325 97 HOH HOH . R 12 HOH H 26 326 112 HOH HOH . R 12 HOH H 27 327 72 HOH HOH . R 12 HOH H 28 328 53 HOH HOH . R 12 HOH H 29 329 117 HOH HOH . R 12 HOH H 30 330 30 HOH HOH . R 12 HOH H 31 331 96 HOH HOH . R 12 HOH H 32 332 116 HOH HOH . R 12 HOH H 33 333 9 HOH HOH . R 12 HOH H 34 334 115 HOH HOH . R 12 HOH H 35 335 61 HOH HOH . R 12 HOH H 36 336 100 HOH HOH . R 12 HOH H 37 337 5 HOH HOH . R 12 HOH H 38 338 120 HOH HOH . R 12 HOH H 39 339 102 HOH HOH . R 12 HOH H 40 340 106 HOH HOH . R 12 HOH H 41 341 118 HOH HOH . R 12 HOH H 42 342 98 HOH HOH . R 12 HOH H 43 343 107 HOH HOH . R 12 HOH H 44 344 68 HOH HOH . R 12 HOH H 45 345 110 HOH HOH . R 12 HOH H 46 346 75 HOH HOH . R 12 HOH H 47 347 113 HOH HOH . R 12 HOH H 48 348 73 HOH HOH . R 12 HOH H 49 349 66 HOH HOH . R 12 HOH H 50 350 95 HOH HOH . R 12 HOH H 51 351 104 HOH HOH . R 12 HOH H 52 352 101 HOH HOH . S 12 HOH L 1 401 26 HOH HOH . S 12 HOH L 2 402 4 HOH HOH . S 12 HOH L 3 403 130 HOH HOH . S 12 HOH L 4 404 10 HOH HOH . S 12 HOH L 5 405 15 HOH HOH . S 12 HOH L 6 406 7 HOH HOH . S 12 HOH L 7 407 3 HOH HOH . S 12 HOH L 8 408 2 HOH HOH . S 12 HOH L 9 409 126 HOH HOH . S 12 HOH L 10 410 125 HOH HOH . S 12 HOH L 11 411 124 HOH HOH . S 12 HOH L 12 412 105 HOH HOH . S 12 HOH L 13 413 6 HOH HOH . S 12 HOH L 14 414 138 HOH HOH . S 12 HOH L 15 415 139 HOH HOH . S 12 HOH L 16 416 50 HOH HOH . S 12 HOH L 17 417 128 HOH HOH . S 12 HOH L 18 418 131 HOH HOH . S 12 HOH L 19 419 129 HOH HOH . S 12 HOH L 20 420 127 HOH HOH . S 12 HOH L 21 421 133 HOH HOH . S 12 HOH L 22 422 132 HOH HOH . S 12 HOH L 23 423 46 HOH HOH . S 12 HOH L 24 424 134 HOH HOH . S 12 HOH L 25 425 94 HOH HOH . S 12 HOH L 26 426 24 HOH HOH . S 12 HOH L 27 427 135 HOH HOH . S 12 HOH L 28 428 38 HOH HOH . S 12 HOH L 29 429 60 HOH HOH . T 12 HOH M 1 501 140 HOH HOH . T 12 HOH M 2 502 13 HOH HOH . T 12 HOH M 3 503 93 HOH HOH . T 12 HOH M 4 504 49 HOH HOH . T 12 HOH M 5 505 84 HOH HOH . T 12 HOH M 6 506 146 HOH HOH . T 12 HOH M 7 507 145 HOH HOH . T 12 HOH M 8 508 36 HOH HOH . T 12 HOH M 9 509 18 HOH HOH . T 12 HOH M 10 510 144 HOH HOH . T 12 HOH M 11 511 92 HOH HOH . T 12 HOH M 12 512 14 HOH HOH . T 12 HOH M 13 513 47 HOH HOH . T 12 HOH M 14 514 85 HOH HOH . T 12 HOH M 15 515 64 HOH HOH . T 12 HOH M 16 516 141 HOH HOH . T 12 HOH M 17 517 1 HOH HOH . T 12 HOH M 18 518 16 HOH HOH . T 12 HOH M 19 519 59 HOH HOH . T 12 HOH M 20 520 20 HOH HOH . T 12 HOH M 21 521 91 HOH HOH . T 12 HOH M 22 522 142 HOH HOH . T 12 HOH M 23 523 23 HOH HOH . T 12 HOH M 24 524 143 HOH HOH . T 12 HOH M 25 525 137 HOH HOH . T 12 HOH M 26 526 136 HOH HOH . T 12 HOH M 27 527 87 HOH HOH . T 12 HOH M 28 528 35 HOH HOH . T 12 HOH M 29 529 88 HOH HOH . T 12 HOH M 30 530 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 9 _atom_site.Cartn_x -42.042 _atom_site.Cartn_y 47.723 _atom_site.Cartn_z 9.398 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 405 _atom_site.auth_asym_id M _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #