data_8VTK # _model_server_result.job_id hCIN65GQqINYfFOawk5MXA _model_server_result.datetime_utc '2025-07-31 15:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 8VTK # _exptl.entry_id 8VTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VTK _cell.length_a 140.95 _cell.length_b 140.95 _cell.length_c 186.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 I N N ? 6 K N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LEU 208 M LEU 209 1_555 C N 2L5 209 M 2L5 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale2 C C 2L5 209 M 2L5 210 1_555 C N GLY 210 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 93 n n MG NB BCL sing 94 n n MG NC BCL sing 95 n n MG ND BCL sing 96 n n CHA C1A BCL sing 97 n n CHA C4D BCL doub 98 n n CHA CBD BCL sing 99 n n CHB C4A BCL doub 100 n n CHB C1B BCL sing 101 n n CHB HHB BCL sing 102 n n CHC C4B BCL sing 103 n n CHC C1C BCL doub 104 n n CHC HHC BCL sing 105 n n CHD C4C BCL sing 106 n n CHD C1D BCL doub 107 n n CHD HHD BCL sing 108 n n NA C1A BCL doub 109 n n NA C4A BCL sing 110 n n C1A C2A BCL sing 111 n n C2A C3A BCL sing 112 n n C2A CAA BCL sing 113 n n C2A H2A BCL sing 114 n n C3A C4A BCL sing 115 n n C3A CMA BCL sing 116 n n C3A H3A BCL sing 117 n n CMA HMA1 BCL sing 118 n n CMA HMA2 BCL sing 119 n n CMA HMA3 BCL sing 120 n n CAA CBA BCL sing 121 n n CAA HAA1 BCL sing 122 n n CAA HAA2 BCL sing 123 n n CBA CGA BCL sing 124 n n CBA HBA1 BCL sing 125 n n CBA HBA2 BCL sing 126 n n CGA O1A BCL doub 127 n n CGA O2A BCL sing 128 n n O2A C1 BCL sing 129 n n NB C1B BCL sing 130 n y NB C4B BCL sing 131 n y C1B C2B BCL doub 132 n y C2B C3B BCL sing 133 n y C2B CMB BCL sing 134 n n C3B C4B BCL doub 135 n y C3B CAB BCL sing 136 n n CMB HMB1 BCL sing 137 n n CMB HMB2 BCL sing 138 n n CMB HMB3 BCL sing 139 n n CAB OBB BCL doub 140 n n CAB CBB BCL sing 141 n n CBB HBB1 BCL sing 142 n n CBB HBB2 BCL sing 143 n n CBB HBB3 BCL sing 144 n n NC C1C BCL sing 145 n n NC C4C BCL doub 146 n n C1C C2C BCL sing 147 n n C2C C3C BCL sing 148 n n C2C CMC BCL sing 149 n n C2C H2C BCL sing 150 n n C3C C4C BCL sing 151 n n C3C CAC BCL sing 152 n n C3C H3C BCL sing 153 n n CMC HMC1 BCL sing 154 n n CMC HMC2 BCL sing 155 n n CMC HMC3 BCL sing 156 n n CAC CBC BCL sing 157 n n CAC HAC1 BCL sing 158 n n CAC HAC2 BCL sing 159 n n CBC HBC1 BCL sing 160 n n CBC HBC2 BCL sing 161 n n CBC HBC3 BCL sing 162 n n ND C1D BCL sing 163 n n ND C4D BCL sing 164 n n C1D C2D BCL sing 165 n n C2D C3D BCL doub 166 n n C2D CMD BCL sing 167 n n C3D C4D BCL sing 168 n n C3D CAD BCL sing 169 n n CMD HMD1 BCL sing 170 n n CMD HMD2 BCL sing 171 n n CMD HMD3 BCL sing 172 n n CAD OBD BCL doub 173 n n CAD CBD BCL sing 174 n n CBD CGD BCL sing 175 n n CBD HBD BCL sing 176 n n CGD O1D BCL doub 177 n n CGD O2D BCL sing 178 n n O2D CED BCL sing 179 n n CED HED1 BCL sing 180 n n CED HED2 BCL sing 181 n n CED HED3 BCL sing 182 n n C1 C2 BCL sing 183 n n C1 H11 BCL sing 184 n n C1 H12 BCL sing 185 n n C2 C3 BCL doub 186 e n C2 H2 BCL sing 187 n n C3 C4 BCL sing 188 n n C3 C5 BCL sing 189 n n C4 H41 BCL sing 190 n n C4 H42 BCL sing 191 n n C4 H43 BCL sing 192 n n C5 C6 BCL sing 193 n n C5 H51 BCL sing 194 n n C5 H52 BCL sing 195 n n C6 C7 BCL sing 196 n n C6 H61 BCL sing 197 n n C6 H62 BCL sing 198 n n C7 C8 BCL sing 199 n n C7 H71 BCL sing 200 n n C7 H72 BCL sing 201 n n C8 C9 BCL sing 202 n n C8 C10 BCL sing 203 n n C8 H8 BCL sing 204 n n C9 H91 BCL sing 205 n n C9 H92 BCL sing 206 n n C9 H93 BCL sing 207 n n C10 C11 BCL sing 208 n n C10 H101 BCL sing 209 n n C10 H102 BCL sing 210 n n C11 C12 BCL sing 211 n n C11 H111 BCL sing 212 n n C11 H112 BCL sing 213 n n C12 C13 BCL sing 214 n n C12 H121 BCL sing 215 n n C12 H122 BCL sing 216 n n C13 C14 BCL sing 217 n n C13 C15 BCL sing 218 n n C13 H13 BCL sing 219 n n C14 H141 BCL sing 220 n n C14 H142 BCL sing 221 n n C14 H143 BCL sing 222 n n C15 C16 BCL sing 223 n n C15 H151 BCL sing 224 n n C15 H152 BCL sing 225 n n C16 C17 BCL sing 226 n n C16 H161 BCL sing 227 n n C16 H162 BCL sing 228 n n C17 C18 BCL sing 229 n n C17 H171 BCL sing 230 n n C17 H172 BCL sing 231 n n C18 C19 BCL sing 232 n n C18 C20 BCL sing 233 n n C18 H18 BCL sing 234 n n C19 H191 BCL sing 235 n n C19 H192 BCL sing 236 n n C19 H193 BCL sing 237 n n C20 H201 BCL sing 238 n n C20 H202 BCL sing 239 n n C20 H203 BCL sing 240 n n # _atom_sites.entry_id 8VTK _atom_sites.fract_transf_matrix[1][1] 0.007095 _atom_sites.fract_transf_matrix[1][2] 0.004096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE L 1 301 406 FE FE . E 5 BPH L 1 302 407 BPH BPH . F 6 BCL L 1 303 301 BCL BCL . G 5 BPH L 1 304 302 BPH BPH . H 7 U10 L 1 305 303 U10 U10 . I 6 BCL L 1 306 304 BCL BCL . J 8 CL L 1 307 306 CL CL . K 6 BCL M 1 401 401 BCL BCL . L 9 LDA M 1 402 403 LDA LDA . M 9 LDA M 1 403 405 LDA LDA . N 10 SPO M 1 404 409 SPO SPO . O 11 CDL M 1 405 410 CDL CDL . P 6 BCL M 1 406 305 BCL BCL . Q 12 HOH H 1 301 3 HOH HOH . Q 12 HOH H 2 302 7 HOH HOH . Q 12 HOH H 3 303 2 HOH HOH . Q 12 HOH H 4 304 12 HOH HOH . Q 12 HOH H 5 305 9 HOH HOH . R 12 HOH L 1 401 15 HOH HOH . R 12 HOH L 2 402 6 HOH HOH . R 12 HOH L 3 403 11 HOH HOH . R 12 HOH L 4 404 1 HOH HOH . S 12 HOH M 1 501 13 HOH HOH . S 12 HOH M 2 502 8 HOH HOH . S 12 HOH M 3 503 14 HOH HOH . S 12 HOH M 4 504 17 HOH HOH . S 12 HOH M 5 505 16 HOH HOH . S 12 HOH M 6 506 19 HOH HOH . S 12 HOH M 7 507 20 HOH HOH . S 12 HOH M 8 508 10 HOH HOH . S 12 HOH M 9 509 5 HOH HOH . S 12 HOH M 10 510 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . F 6 -56.951 26.883 0.705 1 46.02 ? MG BCL 303 L 1 HETATM 2 C CHA BCL . . . F 6 -54.065 25.615 2.225 1 51 ? CHA BCL 303 L 1 HETATM 3 C CHB BCL . . . F 6 -58.157 27.623 3.831 1 49.45 ? CHB BCL 303 L 1 HETATM 4 C CHC BCL . . . F 6 -59.116 29.139 -0.711 1 48.95 ? CHC BCL 303 L 1 HETATM 5 C CHD BCL . . . F 6 -55.364 26.655 -2.39 1 49.79 ? CHD BCL 303 L 1 HETATM 6 N NA BCL . . . F 6 -56.196 26.63 2.725 1 48.89 ? NA BCL 303 L 1 HETATM 7 C C1A BCL . . . F 6 -55.024 25.973 3.149 1 51.43 ? C1A BCL 303 L 1 HETATM 8 C C2A BCL . . . F 6 -54.962 25.9 4.648 1 48.19 ? C2A BCL 303 L 1 HETATM 9 C C3A BCL . . . F 6 -56.443 26.14 5.03 1 42.83 ? C3A BCL 303 L 1 HETATM 10 C C4A BCL . . . F 6 -56.965 26.906 3.858 1 47.56 ? C4A BCL 303 L 1 HETATM 11 C CMA BCL . . . F 6 -57.189 24.83 5.114 1 44.57 ? CMA BCL 303 L 1 HETATM 12 C CAA BCL . . . F 6 -53.972 26.932 5.239 1 46.05 ? CAA BCL 303 L 1 HETATM 13 C CBA BCL . . . F 6 -54.339 28.379 4.864 1 46.62 ? CBA BCL 303 L 1 HETATM 14 C CGA BCL . . . F 6 -53.363 29.399 5.251 1 49.57 ? CGA BCL 303 L 1 HETATM 15 O O1A BCL . . . F 6 -52.463 29.205 5.88 1 53.84 ? O1A BCL 303 L 1 HETATM 16 O O2A BCL . . . F 6 -53.603 30.584 4.77 1 57.82 ? O2A BCL 303 L 1 HETATM 17 N NB BCL . . . F 6 -58.394 28.209 1.431 1 49.69 ? NB BCL 303 L 1 HETATM 18 C C1B BCL . . . F 6 -58.78 28.349 2.767 1 49.22 ? C1B BCL 303 L 1 HETATM 19 C C2B BCL . . . F 6 -59.841 29.274 2.87 1 44.79 ? C2B BCL 303 L 1 HETATM 20 C C3B BCL . . . F 6 -60.146 29.742 1.569 1 50.98 ? C3B BCL 303 L 1 HETATM 21 C C4B BCL . . . F 6 -59.203 29.056 0.692 1 49.4 ? C4B BCL 303 L 1 HETATM 22 C CMB BCL . . . F 6 -60.473 29.645 4.167 1 46.01 ? CMB BCL 303 L 1 HETATM 23 C CAB BCL . . . F 6 -61.201 30.712 1.168 1 55.85 ? CAB BCL 303 L 1 HETATM 24 O OBB BCL . . . F 6 -62.268 30.878 1.837 1 61.82 ? OBB BCL 303 L 1 HETATM 25 C CBB BCL . . . F 6 -61.077 31.578 -0.069 1 46.59 ? CBB BCL 303 L 1 HETATM 26 N NC BCL . . . F 6 -57.155 27.797 -1.238 1 49.54 ? NC BCL 303 L 1 HETATM 27 C C1C BCL . . . F 6 -58.249 28.521 -1.634 1 50.78 ? C1C BCL 303 L 1 HETATM 28 C C2C BCL . . . F 6 -58.329 28.68 -3.114 1 47.59 ? C2C BCL 303 L 1 HETATM 29 C C3C BCL . . . F 6 -56.915 28.3 -3.537 1 47.49 ? C3C BCL 303 L 1 HETATM 30 C C4C BCL . . . F 6 -56.498 27.43 -2.389 1 45.3 ? C4C BCL 303 L 1 HETATM 31 C CMC BCL . . . F 6 -59.418 27.877 -3.779 1 45.56 ? CMC BCL 303 L 1 HETATM 32 C CAC BCL . . . F 6 -55.988 29.544 -3.821 1 50.58 ? CAC BCL 303 L 1 HETATM 33 C CBC BCL . . . F 6 -55.914 30.562 -2.703 1 45.2 ? CBC BCL 303 L 1 HETATM 34 N ND BCL . . . F 6 -55.098 26.375 0.032 1 43.79 ? ND BCL 303 L 1 HETATM 35 C C1D BCL . . . F 6 -54.64 26.131 -1.27 1 49.78 ? C1D BCL 303 L 1 HETATM 36 C C2D BCL . . . F 6 -53.482 25.337 -1.284 1 45.29 ? C2D BCL 303 L 1 HETATM 37 C C3D BCL . . . F 6 -53.201 25.101 0.031 1 46.3 ? C3D BCL 303 L 1 HETATM 38 C C4D BCL . . . F 6 -54.175 25.744 0.806 1 46.43 ? C4D BCL 303 L 1 HETATM 39 C CMD BCL . . . F 6 -52.749 24.877 -2.527 1 44.75 ? CMD BCL 303 L 1 HETATM 40 C CAD BCL . . . F 6 -52.407 24.345 0.912 1 52.44 ? CAD BCL 303 L 1 HETATM 41 O OBD BCL . . . F 6 -51.493 23.524 0.639 1 49.91 ? OBD BCL 303 L 1 HETATM 42 C CBD BCL . . . F 6 -52.848 24.681 2.416 1 48.04 ? CBD BCL 303 L 1 HETATM 43 C CGD BCL . . . F 6 -53.131 23.409 3.121 1 48.04 ? CGD BCL 303 L 1 HETATM 44 O O1D BCL . . . F 6 -52.339 22.879 3.812 1 53.14 ? O1D BCL 303 L 1 HETATM 45 O O2D BCL . . . F 6 -54.341 22.843 2.948 1 47.45 ? O2D BCL 303 L 1 HETATM 46 C CED BCL . . . F 6 -54.693 21.539 3.481 1 44.01 ? CED BCL 303 L 1 HETATM 47 C C1 BCL . . . F 6 -52.712 31.707 5.115 1 50.44 ? C1 BCL 303 L 1 HETATM 48 C C2 BCL . . . F 6 -53.398 32.324 6.343 1 50.97 ? C2 BCL 303 L 1 HETATM 49 C C3 BCL . . . F 6 -52.917 32.431 7.566 1 51.76 ? C3 BCL 303 L 1 HETATM 50 C C4 BCL . . . F 6 -51.508 31.942 8.001 1 47.87 ? C4 BCL 303 L 1 HETATM 51 C C5 BCL . . . F 6 -53.788 33.081 8.674 1 47.63 ? C5 BCL 303 L 1 HETATM 52 C C6 BCL . . . F 6 -54.594 32.079 9.512 1 52.6 ? C6 BCL 303 L 1 HETATM 53 C C7 BCL . . . F 6 -55.687 31.313 8.724 1 52.66 ? C7 BCL 303 L 1 HETATM 54 C C8 BCL . . . F 6 -56.384 30.146 9.463 1 56.41 ? C8 BCL 303 L 1 HETATM 55 C C9 BCL . . . F 6 -55.418 28.978 9.819 1 51.21 ? C9 BCL 303 L 1 HETATM 56 C C10 BCL . . . F 6 -57.503 29.607 8.563 1 62.81 ? C10 BCL 303 L 1 HETATM 57 C C11 BCL . . . F 6 -58.137 28.281 8.927 1 53.66 ? C11 BCL 303 L 1 HETATM 58 C C12 BCL . . . F 6 -59.492 28.117 8.236 1 56.8 ? C12 BCL 303 L 1 HETATM 59 C C13 BCL . . . F 6 -60.259 26.873 8.778 1 67.68 ? C13 BCL 303 L 1 HETATM 60 C C14 BCL . . . F 6 -59.498 25.517 8.681 1 51.73 ? C14 BCL 303 L 1 HETATM 61 C C15 BCL . . . F 6 -61.63 26.788 8.042 1 66.41 ? C15 BCL 303 L 1 HETATM 62 C C16 BCL . . . F 6 -62.526 27.959 8.353 1 62.18 ? C16 BCL 303 L 1 HETATM 63 C C17 BCL . . . F 6 -63.186 27.96 9.741 1 66.56 ? C17 BCL 303 L 1 HETATM 64 C C18 BCL . . . F 6 -64.653 27.946 9.341 1 68.64 ? C18 BCL 303 L 1 HETATM 65 C C19 BCL . . . F 6 -65.521 28.636 10.427 1 66.8 ? C19 BCL 303 L 1 HETATM 66 C C20 BCL . . . F 6 -65.036 26.499 9.026 1 65.11 ? C20 BCL 303 L 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #