data_8VTK # _model_server_result.job_id ij-vLIxkZsRvIc8wbEpdsA _model_server_result.datetime_utc '2025-07-30 20:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 8VTK # _exptl.entry_id 8VTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VTK _cell.length_a 140.95 _cell.length_b 140.95 _cell.length_c 186.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 I N N ? 6 K N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LEU 208 M LEU 209 1_555 C N 2L5 209 M 2L5 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale2 C C 2L5 209 M 2L5 210 1_555 C N GLY 210 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 93 n n MG NB BCL sing 94 n n MG NC BCL sing 95 n n MG ND BCL sing 96 n n CHA C1A BCL sing 97 n n CHA C4D BCL doub 98 n n CHA CBD BCL sing 99 n n CHB C4A BCL doub 100 n n CHB C1B BCL sing 101 n n CHB HHB BCL sing 102 n n CHC C4B BCL sing 103 n n CHC C1C BCL doub 104 n n CHC HHC BCL sing 105 n n CHD C4C BCL sing 106 n n CHD C1D BCL doub 107 n n CHD HHD BCL sing 108 n n NA C1A BCL doub 109 n n NA C4A BCL sing 110 n n C1A C2A BCL sing 111 n n C2A C3A BCL sing 112 n n C2A CAA BCL sing 113 n n C2A H2A BCL sing 114 n n C3A C4A BCL sing 115 n n C3A CMA BCL sing 116 n n C3A H3A BCL sing 117 n n CMA HMA1 BCL sing 118 n n CMA HMA2 BCL sing 119 n n CMA HMA3 BCL sing 120 n n CAA CBA BCL sing 121 n n CAA HAA1 BCL sing 122 n n CAA HAA2 BCL sing 123 n n CBA CGA BCL sing 124 n n CBA HBA1 BCL sing 125 n n CBA HBA2 BCL sing 126 n n CGA O1A BCL doub 127 n n CGA O2A BCL sing 128 n n O2A C1 BCL sing 129 n n NB C1B BCL sing 130 n y NB C4B BCL sing 131 n y C1B C2B BCL doub 132 n y C2B C3B BCL sing 133 n y C2B CMB BCL sing 134 n n C3B C4B BCL doub 135 n y C3B CAB BCL sing 136 n n CMB HMB1 BCL sing 137 n n CMB HMB2 BCL sing 138 n n CMB HMB3 BCL sing 139 n n CAB OBB BCL doub 140 n n CAB CBB BCL sing 141 n n CBB HBB1 BCL sing 142 n n CBB HBB2 BCL sing 143 n n CBB HBB3 BCL sing 144 n n NC C1C BCL sing 145 n n NC C4C BCL doub 146 n n C1C C2C BCL sing 147 n n C2C C3C BCL sing 148 n n C2C CMC BCL sing 149 n n C2C H2C BCL sing 150 n n C3C C4C BCL sing 151 n n C3C CAC BCL sing 152 n n C3C H3C BCL sing 153 n n CMC HMC1 BCL sing 154 n n CMC HMC2 BCL sing 155 n n CMC HMC3 BCL sing 156 n n CAC CBC BCL sing 157 n n CAC HAC1 BCL sing 158 n n CAC HAC2 BCL sing 159 n n CBC HBC1 BCL sing 160 n n CBC HBC2 BCL sing 161 n n CBC HBC3 BCL sing 162 n n ND C1D BCL sing 163 n n ND C4D BCL sing 164 n n C1D C2D BCL sing 165 n n C2D C3D BCL doub 166 n n C2D CMD BCL sing 167 n n C3D C4D BCL sing 168 n n C3D CAD BCL sing 169 n n CMD HMD1 BCL sing 170 n n CMD HMD2 BCL sing 171 n n CMD HMD3 BCL sing 172 n n CAD OBD BCL doub 173 n n CAD CBD BCL sing 174 n n CBD CGD BCL sing 175 n n CBD HBD BCL sing 176 n n CGD O1D BCL doub 177 n n CGD O2D BCL sing 178 n n O2D CED BCL sing 179 n n CED HED1 BCL sing 180 n n CED HED2 BCL sing 181 n n CED HED3 BCL sing 182 n n C1 C2 BCL sing 183 n n C1 H11 BCL sing 184 n n C1 H12 BCL sing 185 n n C2 C3 BCL doub 186 e n C2 H2 BCL sing 187 n n C3 C4 BCL sing 188 n n C3 C5 BCL sing 189 n n C4 H41 BCL sing 190 n n C4 H42 BCL sing 191 n n C4 H43 BCL sing 192 n n C5 C6 BCL sing 193 n n C5 H51 BCL sing 194 n n C5 H52 BCL sing 195 n n C6 C7 BCL sing 196 n n C6 H61 BCL sing 197 n n C6 H62 BCL sing 198 n n C7 C8 BCL sing 199 n n C7 H71 BCL sing 200 n n C7 H72 BCL sing 201 n n C8 C9 BCL sing 202 n n C8 C10 BCL sing 203 n n C8 H8 BCL sing 204 n n C9 H91 BCL sing 205 n n C9 H92 BCL sing 206 n n C9 H93 BCL sing 207 n n C10 C11 BCL sing 208 n n C10 H101 BCL sing 209 n n C10 H102 BCL sing 210 n n C11 C12 BCL sing 211 n n C11 H111 BCL sing 212 n n C11 H112 BCL sing 213 n n C12 C13 BCL sing 214 n n C12 H121 BCL sing 215 n n C12 H122 BCL sing 216 n n C13 C14 BCL sing 217 n n C13 C15 BCL sing 218 n n C13 H13 BCL sing 219 n n C14 H141 BCL sing 220 n n C14 H142 BCL sing 221 n n C14 H143 BCL sing 222 n n C15 C16 BCL sing 223 n n C15 H151 BCL sing 224 n n C15 H152 BCL sing 225 n n C16 C17 BCL sing 226 n n C16 H161 BCL sing 227 n n C16 H162 BCL sing 228 n n C17 C18 BCL sing 229 n n C17 H171 BCL sing 230 n n C17 H172 BCL sing 231 n n C18 C19 BCL sing 232 n n C18 C20 BCL sing 233 n n C18 H18 BCL sing 234 n n C19 H191 BCL sing 235 n n C19 H192 BCL sing 236 n n C19 H193 BCL sing 237 n n C20 H201 BCL sing 238 n n C20 H202 BCL sing 239 n n C20 H203 BCL sing 240 n n # _atom_sites.entry_id 8VTK _atom_sites.fract_transf_matrix[1][1] 0.007095 _atom_sites.fract_transf_matrix[1][2] 0.004096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE L 1 301 406 FE FE . E 5 BPH L 1 302 407 BPH BPH . F 6 BCL L 1 303 301 BCL BCL . G 5 BPH L 1 304 302 BPH BPH . H 7 U10 L 1 305 303 U10 U10 . I 6 BCL L 1 306 304 BCL BCL . J 8 CL L 1 307 306 CL CL . K 6 BCL M 1 401 401 BCL BCL . L 9 LDA M 1 402 403 LDA LDA . M 9 LDA M 1 403 405 LDA LDA . N 10 SPO M 1 404 409 SPO SPO . O 11 CDL M 1 405 410 CDL CDL . P 6 BCL M 1 406 305 BCL BCL . Q 12 HOH H 1 301 3 HOH HOH . Q 12 HOH H 2 302 7 HOH HOH . Q 12 HOH H 3 303 2 HOH HOH . Q 12 HOH H 4 304 12 HOH HOH . Q 12 HOH H 5 305 9 HOH HOH . R 12 HOH L 1 401 15 HOH HOH . R 12 HOH L 2 402 6 HOH HOH . R 12 HOH L 3 403 11 HOH HOH . R 12 HOH L 4 404 1 HOH HOH . S 12 HOH M 1 501 13 HOH HOH . S 12 HOH M 2 502 8 HOH HOH . S 12 HOH M 3 503 14 HOH HOH . S 12 HOH M 4 504 17 HOH HOH . S 12 HOH M 5 505 16 HOH HOH . S 12 HOH M 6 506 19 HOH HOH . S 12 HOH M 7 507 20 HOH HOH . S 12 HOH M 8 508 10 HOH HOH . S 12 HOH M 9 509 5 HOH HOH . S 12 HOH M 10 510 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . K 6 -45.778 23.709 -4.841 1 49.89 ? MG BCL 401 M 1 HETATM 2 C CHA BCL . . . K 6 -42.462 24.337 -4.015 1 46.94 ? CHA BCL 401 M 1 HETATM 3 C CHB BCL . . . K 6 -46.549 26.735 -3.496 1 45.25 ? CHB BCL 401 M 1 HETATM 4 C CHC BCL . . . K 6 -48.812 23.564 -6.33 1 52.05 ? CHC BCL 401 M 1 HETATM 5 C CHD BCL . . . K 6 -44.657 21.318 -7.149 1 49.05 ? CHD BCL 401 M 1 HETATM 6 N NA BCL . . . K 6 -44.64 25.312 -3.921 1 43.92 ? NA BCL 401 M 1 HETATM 7 C C1A BCL . . . K 6 -43.305 25.261 -3.479 1 48.15 ? C1A BCL 401 M 1 HETATM 8 C C2A BCL . . . K 6 -42.965 26.393 -2.546 1 46.3 ? C2A BCL 401 M 1 HETATM 9 C C3A BCL . . . K 6 -44.255 27.208 -2.518 1 47.22 ? C3A BCL 401 M 1 HETATM 10 C C4A BCL . . . K 6 -45.251 26.358 -3.265 1 46.73 ? C4A BCL 401 M 1 HETATM 11 C CMA BCL . . . K 6 -44.749 27.431 -1.114 1 50.88 ? CMA BCL 401 M 1 HETATM 12 C CAA BCL . . . K 6 -41.773 27.225 -3.046 1 44.81 ? CAA BCL 401 M 1 HETATM 13 C CBA BCL . . . K 6 -41.277 28.256 -2.066 1 49.6 ? CBA BCL 401 M 1 HETATM 14 C CGA BCL . . . K 6 -40.423 29.365 -2.608 1 52.18 ? CGA BCL 401 M 1 HETATM 15 O O1A BCL . . . K 6 -40.366 30.443 -2.106 1 52.4 ? O1A BCL 401 M 1 HETATM 16 O O2A BCL . . . K 6 -39.664 29.086 -3.677 1 49.41 ? O2A BCL 401 M 1 HETATM 17 N NB BCL . . . K 6 -47.414 24.97 -4.94 1 50.34 ? NB BCL 401 M 1 HETATM 18 C C1B BCL . . . K 6 -47.547 26.197 -4.287 1 48.78 ? C1B BCL 401 M 1 HETATM 19 C C2B BCL . . . K 6 -48.828 26.752 -4.532 1 47.8 ? C2B BCL 401 M 1 HETATM 20 C C3B BCL . . . K 6 -49.541 25.811 -5.328 1 52.58 ? C3B BCL 401 M 1 HETATM 21 C C4B BCL . . . K 6 -48.602 24.734 -5.595 1 48.75 ? C4B BCL 401 M 1 HETATM 22 C CMB BCL . . . K 6 -49.288 28.11 -4.02 1 36.83 ? CMB BCL 401 M 1 HETATM 23 C CAB BCL . . . K 6 -50.932 25.929 -5.752 1 58.29 ? CAB BCL 401 M 1 HETATM 24 O OBB BCL . . . K 6 -51.7 26.797 -5.275 1 61.7 ? OBB BCL 401 M 1 HETATM 25 C CBB BCL . . . K 6 -51.541 25.027 -6.79 1 51.79 ? CBB BCL 401 M 1 HETATM 26 N NC BCL . . . K 6 -46.61 22.574 -6.459 1 47.88 ? NC BCL 401 M 1 HETATM 27 C C1C BCL . . . K 6 -47.888 22.693 -6.935 1 54.67 ? C1C BCL 401 M 1 HETATM 28 C C2C BCL . . . K 6 -48.294 21.471 -7.651 1 46.47 ? C2C BCL 401 M 1 HETATM 29 C C3C BCL . . . K 6 -46.958 21.016 -8.215 1 45.84 ? C3C BCL 401 M 1 HETATM 30 C C4C BCL . . . K 6 -45.983 21.668 -7.269 1 47.79 ? C4C BCL 401 M 1 HETATM 31 C CMC BCL . . . K 6 -48.9 20.549 -6.616 1 46.82 ? CMC BCL 401 M 1 HETATM 32 C CAC BCL . . . K 6 -46.62 21.466 -9.65 1 49.68 ? CAC BCL 401 M 1 HETATM 33 C CBC BCL . . . K 6 -47.647 21.057 -10.653 1 51.89 ? CBC BCL 401 M 1 HETATM 34 N ND BCL . . . K 6 -43.98 23.008 -5.542 1 51.71 ? ND BCL 401 M 1 HETATM 35 C C1D BCL . . . K 6 -43.65 21.94 -6.38 1 45.99 ? C1D BCL 401 M 1 HETATM 36 C C2D BCL . . . K 6 -42.282 21.625 -6.306 1 47.45 ? C2D BCL 401 M 1 HETATM 37 C C3D BCL . . . K 6 -41.744 22.53 -5.372 1 49.89 ? C3D BCL 401 M 1 HETATM 38 C C4D BCL . . . K 6 -42.785 23.34 -4.953 1 50.72 ? C4D BCL 401 M 1 HETATM 39 C CMD BCL . . . K 6 -41.593 20.532 -7.095 1 49.79 ? CMD BCL 401 M 1 HETATM 40 C CAD BCL . . . K 6 -40.602 22.922 -4.608 1 51.09 ? CAD BCL 401 M 1 HETATM 41 O OBD BCL . . . K 6 -39.402 22.548 -4.669 1 55.24 ? OBD BCL 401 M 1 HETATM 42 C CBD BCL . . . K 6 -41.055 23.987 -3.572 1 46.7 ? CBD BCL 401 M 1 HETATM 43 C CGD BCL . . . K 6 -41.046 23.485 -2.191 1 52.58 ? CGD BCL 401 M 1 HETATM 44 O O1D BCL . . . K 6 -40.445 23.964 -1.241 1 51.13 ? O1D BCL 401 M 1 HETATM 45 O O2D BCL . . . K 6 -41.79 22.403 -2.037 1 54.24 ? O2D BCL 401 M 1 HETATM 46 C CED BCL . . . K 6 -41.927 21.926 -0.663 1 51.5 ? CED BCL 401 M 1 HETATM 47 C C1 BCL . . . K 6 -38.857 30.126 -4.31 1 46.01 ? C1 BCL 401 M 1 HETATM 48 C C2 BCL . . . K 6 -37.451 30.235 -3.686 1 48.99 ? C2 BCL 401 M 1 HETATM 49 C C3 BCL . . . K 6 -36.42 29.45 -3.943 1 49.13 ? C3 BCL 401 M 1 HETATM 50 C C4 BCL . . . K 6 -36.429 28.261 -4.891 1 48.62 ? C4 BCL 401 M 1 HETATM 51 C C5 BCL . . . K 6 -35.07 29.685 -3.287 1 48.71 ? C5 BCL 401 M 1 HETATM 52 C C6 BCL . . . K 6 -34.007 30.371 -4.202 1 47.96 ? C6 BCL 401 M 1 HETATM 53 C C7 BCL . . . K 6 -32.743 30.723 -3.43 1 50.64 ? C7 BCL 401 M 1 HETATM 54 C C8 BCL . . . K 6 -31.519 31.057 -4.262 1 56.56 ? C8 BCL 401 M 1 HETATM 55 C C9 BCL . . . K 6 -30.282 31.291 -3.355 1 51.51 ? C9 BCL 401 M 1 HETATM 56 C C10 BCL . . . K 6 -31.786 32.27 -5.18 1 58.18 ? C10 BCL 401 M 1 HETATM 57 C C11 BCL . . . K 6 -30.553 32.404 -6.076 1 55.29 ? C11 BCL 401 M 1 HETATM 58 C C12 BCL . . . K 6 -30.863 33.207 -7.34 1 60.82 ? C12 BCL 401 M 1 HETATM 59 C C13 BCL . . . K 6 -29.734 33.193 -8.398 1 65.39 ? C13 BCL 401 M 1 HETATM 60 C C14 BCL . . . K 6 -28.403 33.785 -7.902 1 60.58 ? C14 BCL 401 M 1 HETATM 61 C C15 BCL . . . K 6 -30.238 34.009 -9.598 1 61.63 ? C15 BCL 401 M 1 HETATM 62 C C16 BCL . . . K 6 -30.287 35.463 -9.261 1 66.87 ? C16 BCL 401 M 1 HETATM 63 C C17 BCL . . . K 6 -30.479 36.271 -10.571 1 81.66 ? C17 BCL 401 M 1 HETATM 64 C C18 BCL . . . K 6 -30.411 37.823 -10.526 1 83.94 ? C18 BCL 401 M 1 HETATM 65 C C19 BCL . . . K 6 -29.077 38.087 -9.776 1 77.64 ? C19 BCL 401 M 1 HETATM 66 C C20 BCL . . . K 6 -31.64 38.553 -9.899 1 83.32 ? C20 BCL 401 M 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #