data_8VTK # _model_server_result.job_id feRKpLg097jeuJFpA_Yj2g _model_server_result.datetime_utc '2025-07-31 15:17:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 8VTK # _exptl.entry_id 8VTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8VTK _cell.length_a 140.95 _cell.length_b 140.95 _cell.length_c 186.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LEU 208 M LEU 209 1_555 C N 2L5 209 M 2L5 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale2 C C 2L5 209 M 2L5 210 1_555 C N GLY 210 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 745 n n N1 CM1 LDA sing 746 n n N1 CM2 LDA sing 747 n n N1 C1 LDA sing 748 n n CM1 HM11 LDA sing 749 n n CM1 HM12 LDA sing 750 n n CM1 HM13 LDA sing 751 n n CM2 HM21 LDA sing 752 n n CM2 HM22 LDA sing 753 n n CM2 HM23 LDA sing 754 n n C1 C2 LDA sing 755 n n C1 H11 LDA sing 756 n n C1 H12 LDA sing 757 n n C2 C3 LDA sing 758 n n C2 H21 LDA sing 759 n n C2 H22 LDA sing 760 n n C3 C4 LDA sing 761 n n C3 H31 LDA sing 762 n n C3 H32 LDA sing 763 n n C4 C5 LDA sing 764 n n C4 H41 LDA sing 765 n n C4 H42 LDA sing 766 n n C5 C6 LDA sing 767 n n C5 H51 LDA sing 768 n n C5 H52 LDA sing 769 n n C6 C7 LDA sing 770 n n C6 H61 LDA sing 771 n n C6 H62 LDA sing 772 n n C7 C8 LDA sing 773 n n C7 H71 LDA sing 774 n n C7 H72 LDA sing 775 n n C8 C9 LDA sing 776 n n C8 H81 LDA sing 777 n n C8 H82 LDA sing 778 n n C9 C10 LDA sing 779 n n C9 H91 LDA sing 780 n n C9 H92 LDA sing 781 n n C10 C11 LDA sing 782 n n C10 H101 LDA sing 783 n n C10 H102 LDA sing 784 n n C11 C12 LDA sing 785 n n C11 H111 LDA sing 786 n n C11 H112 LDA sing 787 n n C12 H121 LDA sing 788 n n C12 H122 LDA sing 789 n n C12 H123 LDA sing 790 n n # _atom_sites.entry_id 8VTK _atom_sites.fract_transf_matrix[1][1] 0.007095 _atom_sites.fract_transf_matrix[1][2] 0.004096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE L 1 301 406 FE FE . E 5 BPH L 1 302 407 BPH BPH . F 6 BCL L 1 303 301 BCL BCL . G 5 BPH L 1 304 302 BPH BPH . H 7 U10 L 1 305 303 U10 U10 . I 6 BCL L 1 306 304 BCL BCL . J 8 CL L 1 307 306 CL CL . K 6 BCL M 1 401 401 BCL BCL . L 9 LDA M 1 402 403 LDA LDA . M 9 LDA M 1 403 405 LDA LDA . N 10 SPO M 1 404 409 SPO SPO . O 11 CDL M 1 405 410 CDL CDL . P 6 BCL M 1 406 305 BCL BCL . Q 12 HOH H 1 301 3 HOH HOH . Q 12 HOH H 2 302 7 HOH HOH . Q 12 HOH H 3 303 2 HOH HOH . Q 12 HOH H 4 304 12 HOH HOH . Q 12 HOH H 5 305 9 HOH HOH . R 12 HOH L 1 401 15 HOH HOH . R 12 HOH L 2 402 6 HOH HOH . R 12 HOH L 3 403 11 HOH HOH . R 12 HOH L 4 404 1 HOH HOH . S 12 HOH M 1 501 13 HOH HOH . S 12 HOH M 2 502 8 HOH HOH . S 12 HOH M 3 503 14 HOH HOH . S 12 HOH M 4 504 17 HOH HOH . S 12 HOH M 5 505 16 HOH HOH . S 12 HOH M 6 506 19 HOH HOH . S 12 HOH M 7 507 20 HOH HOH . S 12 HOH M 8 508 10 HOH HOH . S 12 HOH M 9 509 5 HOH HOH . S 12 HOH M 10 510 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . L 9 -46.923 61.761 -9.398 1 95.5 ? N1 LDA 402 M 1 HETATM 2 O O1 LDA . . . L 9 -48.135 61.455 -9.3 1 101.77 ? O1 LDA 402 M 1 HETATM 3 C CM1 LDA . . . L 9 -46.588 62.183 -10.779 1 89.92 ? CM1 LDA 402 M 1 HETATM 4 C CM2 LDA . . . L 9 -46.683 62.874 -8.441 1 84 ? CM2 LDA 402 M 1 HETATM 5 C C1 LDA . . . L 9 -46.137 60.578 -9.062 1 86.41 ? C1 LDA 402 M 1 HETATM 6 C C2 LDA . . . L 9 -46.542 59.453 -10.021 1 82.62 ? C2 LDA 402 M 1 HETATM 7 C C3 LDA . . . L 9 -45.307 58.751 -10.589 1 82.62 ? C3 LDA 402 M 1 HETATM 8 C C4 LDA . . . L 9 -45.175 57.286 -10.164 1 82.02 ? C4 LDA 402 M 1 HETATM 9 C C5 LDA . . . L 9 -44.031 56.574 -10.903 1 83.28 ? C5 LDA 402 M 1 HETATM 10 C C6 LDA . . . L 9 -43.954 55.106 -10.465 1 86.98 ? C6 LDA 402 M 1 HETATM 11 C C7 LDA . . . L 9 -42.539 54.537 -10.293 1 87.49 ? C7 LDA 402 M 1 HETATM 12 C C8 LDA . . . L 9 -42.563 53.385 -9.281 1 84.43 ? C8 LDA 402 M 1 HETATM 13 C C9 LDA . . . L 9 -41.226 52.648 -9.173 1 89.4 ? C9 LDA 402 M 1 HETATM 14 C C10 LDA . . . L 9 -41.437 51.201 -8.712 1 94.76 ? C10 LDA 402 M 1 HETATM 15 C C11 LDA . . . L 9 -40.276 50.275 -9.088 1 105.81 ? C11 LDA 402 M 1 HETATM 16 C C12 LDA . . . L 9 -39.98 49.255 -7.991 1 103.66 ? C12 LDA 402 M 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 508 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #