data_8VTK
#
_model_server_result.job_id            gRYMa7VCi-fS3TeLtyAT1w 
_model_server_result.datetime_utc      '2025-08-02 03:34:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vtk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":406}' 
#
_entry.id    8VTK 
#
_exptl.entry_id    8VTK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              911.504 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BACTERIOCHLOROPHYLL A' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8VTK 
_cell.length_a            140.95 
_cell.length_b            140.95 
_cell.length_c            186.72 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VTK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 I N N 
? 6 K N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C LEU 208 M LEU 209 1_555 C N 2L5 209 M 2L5 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale2 C C 2L5 209 M 2L5 210 1_555 C N GLY 210 M GLY 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C55 H74 Mg N4 O6' 
_chem_comp.formula_weight    911.504 
_chem_comp.id                BCL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BACTERIOCHLOROPHYLL A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
MG NA BCL sing 93 n n 
MG NB BCL sing 94 n n 
MG NC BCL sing 95 n n 
MG ND BCL sing 96 n n 
CHA C1A BCL sing 97 n n 
CHA C4D BCL doub 98 n n 
CHA CBD BCL sing 99 n n 
CHB C4A BCL doub 100 n n 
CHB C1B BCL sing 101 n n 
CHB HHB BCL sing 102 n n 
CHC C4B BCL sing 103 n n 
CHC C1C BCL doub 104 n n 
CHC HHC BCL sing 105 n n 
CHD C4C BCL sing 106 n n 
CHD C1D BCL doub 107 n n 
CHD HHD BCL sing 108 n n 
NA C1A BCL doub 109 n n 
NA C4A BCL sing 110 n n 
C1A C2A BCL sing 111 n n 
C2A C3A BCL sing 112 n n 
C2A CAA BCL sing 113 n n 
C2A H2A BCL sing 114 n n 
C3A C4A BCL sing 115 n n 
C3A CMA BCL sing 116 n n 
C3A H3A BCL sing 117 n n 
CMA HMA1 BCL sing 118 n n 
CMA HMA2 BCL sing 119 n n 
CMA HMA3 BCL sing 120 n n 
CAA CBA BCL sing 121 n n 
CAA HAA1 BCL sing 122 n n 
CAA HAA2 BCL sing 123 n n 
CBA CGA BCL sing 124 n n 
CBA HBA1 BCL sing 125 n n 
CBA HBA2 BCL sing 126 n n 
CGA O1A BCL doub 127 n n 
CGA O2A BCL sing 128 n n 
O2A C1 BCL sing 129 n n 
NB C1B BCL sing 130 n y 
NB C4B BCL sing 131 n y 
C1B C2B BCL doub 132 n y 
C2B C3B BCL sing 133 n y 
C2B CMB BCL sing 134 n n 
C3B C4B BCL doub 135 n y 
C3B CAB BCL sing 136 n n 
CMB HMB1 BCL sing 137 n n 
CMB HMB2 BCL sing 138 n n 
CMB HMB3 BCL sing 139 n n 
CAB OBB BCL doub 140 n n 
CAB CBB BCL sing 141 n n 
CBB HBB1 BCL sing 142 n n 
CBB HBB2 BCL sing 143 n n 
CBB HBB3 BCL sing 144 n n 
NC C1C BCL sing 145 n n 
NC C4C BCL doub 146 n n 
C1C C2C BCL sing 147 n n 
C2C C3C BCL sing 148 n n 
C2C CMC BCL sing 149 n n 
C2C H2C BCL sing 150 n n 
C3C C4C BCL sing 151 n n 
C3C CAC BCL sing 152 n n 
C3C H3C BCL sing 153 n n 
CMC HMC1 BCL sing 154 n n 
CMC HMC2 BCL sing 155 n n 
CMC HMC3 BCL sing 156 n n 
CAC CBC BCL sing 157 n n 
CAC HAC1 BCL sing 158 n n 
CAC HAC2 BCL sing 159 n n 
CBC HBC1 BCL sing 160 n n 
CBC HBC2 BCL sing 161 n n 
CBC HBC3 BCL sing 162 n n 
ND C1D BCL sing 163 n n 
ND C4D BCL sing 164 n n 
C1D C2D BCL sing 165 n n 
C2D C3D BCL doub 166 n n 
C2D CMD BCL sing 167 n n 
C3D C4D BCL sing 168 n n 
C3D CAD BCL sing 169 n n 
CMD HMD1 BCL sing 170 n n 
CMD HMD2 BCL sing 171 n n 
CMD HMD3 BCL sing 172 n n 
CAD OBD BCL doub 173 n n 
CAD CBD BCL sing 174 n n 
CBD CGD BCL sing 175 n n 
CBD HBD BCL sing 176 n n 
CGD O1D BCL doub 177 n n 
CGD O2D BCL sing 178 n n 
O2D CED BCL sing 179 n n 
CED HED1 BCL sing 180 n n 
CED HED2 BCL sing 181 n n 
CED HED3 BCL sing 182 n n 
C1 C2 BCL sing 183 n n 
C1 H11 BCL sing 184 n n 
C1 H12 BCL sing 185 n n 
C2 C3 BCL doub 186 e n 
C2 H2 BCL sing 187 n n 
C3 C4 BCL sing 188 n n 
C3 C5 BCL sing 189 n n 
C4 H41 BCL sing 190 n n 
C4 H42 BCL sing 191 n n 
C4 H43 BCL sing 192 n n 
C5 C6 BCL sing 193 n n 
C5 H51 BCL sing 194 n n 
C5 H52 BCL sing 195 n n 
C6 C7 BCL sing 196 n n 
C6 H61 BCL sing 197 n n 
C6 H62 BCL sing 198 n n 
C7 C8 BCL sing 199 n n 
C7 H71 BCL sing 200 n n 
C7 H72 BCL sing 201 n n 
C8 C9 BCL sing 202 n n 
C8 C10 BCL sing 203 n n 
C8 H8 BCL sing 204 n n 
C9 H91 BCL sing 205 n n 
C9 H92 BCL sing 206 n n 
C9 H93 BCL sing 207 n n 
C10 C11 BCL sing 208 n n 
C10 H101 BCL sing 209 n n 
C10 H102 BCL sing 210 n n 
C11 C12 BCL sing 211 n n 
C11 H111 BCL sing 212 n n 
C11 H112 BCL sing 213 n n 
C12 C13 BCL sing 214 n n 
C12 H121 BCL sing 215 n n 
C12 H122 BCL sing 216 n n 
C13 C14 BCL sing 217 n n 
C13 C15 BCL sing 218 n n 
C13 H13 BCL sing 219 n n 
C14 H141 BCL sing 220 n n 
C14 H142 BCL sing 221 n n 
C14 H143 BCL sing 222 n n 
C15 C16 BCL sing 223 n n 
C15 H151 BCL sing 224 n n 
C15 H152 BCL sing 225 n n 
C16 C17 BCL sing 226 n n 
C16 H161 BCL sing 227 n n 
C16 H162 BCL sing 228 n n 
C17 C18 BCL sing 229 n n 
C17 H171 BCL sing 230 n n 
C17 H172 BCL sing 231 n n 
C18 C19 BCL sing 232 n n 
C18 C20 BCL sing 233 n n 
C18 H18 BCL sing 234 n n 
C19 H191 BCL sing 235 n n 
C19 H192 BCL sing 236 n n 
C19 H193 BCL sing 237 n n 
C20 H201 BCL sing 238 n n 
C20 H202 BCL sing 239 n n 
C20 H203 BCL sing 240 n n 
#
_atom_sites.entry_id                     8VTK 
_atom_sites.fract_transf_matrix[1][1]    0.007095 
_atom_sites.fract_transf_matrix[1][2]    0.004096 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008192 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005356 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FE L 1 301 406 FE FE . 
E 5 BPH L 1 302 407 BPH BPH . 
F 6 BCL L 1 303 301 BCL BCL . 
G 5 BPH L 1 304 302 BPH BPH . 
H 7 U10 L 1 305 303 U10 U10 . 
I 6 BCL L 1 306 304 BCL BCL . 
J 8 CL L 1 307 306 CL CL . 
K 6 BCL M 1 401 401 BCL BCL . 
L 9 LDA M 1 402 403 LDA LDA . 
M 9 LDA M 1 403 405 LDA LDA . 
N 10 SPO M 1 404 409 SPO SPO . 
O 11 CDL M 1 405 410 CDL CDL . 
P 6 BCL M 1 406 305 BCL BCL . 
Q 12 HOH H 1 301 3 HOH HOH . 
Q 12 HOH H 2 302 7 HOH HOH . 
Q 12 HOH H 3 303 2 HOH HOH . 
Q 12 HOH H 4 304 12 HOH HOH . 
Q 12 HOH H 5 305 9 HOH HOH . 
R 12 HOH L 1 401 15 HOH HOH . 
R 12 HOH L 2 402 6 HOH HOH . 
R 12 HOH L 3 403 11 HOH HOH . 
R 12 HOH L 4 404 1 HOH HOH . 
S 12 HOH M 1 501 13 HOH HOH . 
S 12 HOH M 2 502 8 HOH HOH . 
S 12 HOH M 3 503 14 HOH HOH . 
S 12 HOH M 4 504 17 HOH HOH . 
S 12 HOH M 5 505 16 HOH HOH . 
S 12 HOH M 6 506 19 HOH HOH . 
S 12 HOH M 7 507 20 HOH HOH . 
S 12 HOH M 8 508 10 HOH HOH . 
S 12 HOH M 9 509 5 HOH HOH . 
S 12 HOH M 10 510 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 MG MG BCL . . . P 6 -38.537 29.216 -10.666 1 46.76 ? MG BCL 406 M 1 
HETATM 2 C CHA BCL . . . P 6 -40.929 31.468 -11.848 1 54.21 ? CHA BCL 406 M 1 
HETATM 3 C CHB BCL . . . P 6 -36.152 31.603 -11.267 1 44.81 ? CHB BCL 406 M 1 
HETATM 4 C CHC BCL . . . P 6 -36.427 27.541 -8.571 1 48.67 ? CHC BCL 406 M 1 
HETATM 5 C CHD BCL . . . P 6 -41.114 27.083 -9.657 1 51 ? CHD BCL 406 M 1 
HETATM 6 N NA BCL . . . P 6 -38.577 31.274 -11.382 1 47.89 ? NA BCL 406 M 1 
HETATM 7 C C1A BCL . . . P 6 -39.653 31.971 -11.96 1 51.82 ? C1A BCL 406 M 1 
HETATM 8 C C2A BCL . . . P 6 -39.229 33.345 -12.412 1 49.48 ? C2A BCL 406 M 1 
HETATM 9 C C3A BCL . . . P 6 -37.722 33.125 -12.631 1 44.81 ? C3A BCL 406 M 1 
HETATM 10 C C4A BCL . . . P 6 -37.414 31.958 -11.725 1 47.07 ? C4A BCL 406 M 1 
HETATM 11 C CMA BCL . . . P 6 -37.41 32.802 -14.072 1 41.02 ? CMA BCL 406 M 1 
HETATM 12 C CAA BCL . . . P 6 -39.536 34.507 -11.404 1 50.66 ? CAA BCL 406 M 1 
HETATM 13 C CBA BCL . . . P 6 -38.744 34.452 -10.028 1 49.62 ? CBA BCL 406 M 1 
HETATM 14 C CGA BCL . . . P 6 -38.995 35.567 -9.063 1 58.55 ? CGA BCL 406 M 1 
HETATM 15 O O1A BCL . . . P 6 -40.064 36.049 -8.946 1 65.52 ? O1A BCL 406 M 1 
HETATM 16 O O2A BCL . . . P 6 -37.901 35.961 -8.236 1 70.03 ? O2A BCL 406 M 1 
HETATM 17 N NB BCL . . . P 6 -36.611 29.529 -9.969 1 50.5 ? NB BCL 406 M 1 
HETATM 18 C C1B BCL . . . P 6 -35.754 30.564 -10.385 1 49.62 ? C1B BCL 406 M 1 
HETATM 19 C C2B BCL . . . P 6 -34.464 30.367 -9.838 1 49.37 ? C2B BCL 406 M 1 
HETATM 20 C C3B BCL . . . P 6 -34.512 29.203 -9.013 1 52.85 ? C3B BCL 406 M 1 
HETATM 21 C C4B BCL . . . P 6 -35.88 28.7 -9.139 1 49.36 ? C4B BCL 406 M 1 
HETATM 22 C CMB BCL . . . P 6 -33.296 31.268 -10.125 1 43.37 ? CMB BCL 406 M 1 
HETATM 23 C CAB BCL . . . P 6 -33.41 28.669 -8.215 1 51.67 ? CAB BCL 406 M 1 
HETATM 24 O OBB BCL . . . P 6 -32.234 29.026 -8.4 1 55.04 ? OBB BCL 406 M 1 
HETATM 25 C CBB BCL . . . P 6 -33.618 27.662 -7.118 1 48.48 ? CBB BCL 406 M 1 
HETATM 26 N NC BCL . . . P 6 -38.749 27.587 -9.295 1 52.26 ? NC BCL 406 M 1 
HETATM 27 C C1C BCL . . . P 6 -37.694 26.955 -8.673 1 51.97 ? C1C BCL 406 M 1 
HETATM 28 C C2C BCL . . . P 6 -38.009 25.57 -8.224 1 48.69 ? C2C BCL 406 M 1 
HETATM 29 C C3C BCL . . . P 6 -39.54 25.513 -8.384 1 50.84 ? C3C BCL 406 M 1 
HETATM 30 C C4C BCL . . . P 6 -39.858 26.767 -9.163 1 53.22 ? C4C BCL 406 M 1 
HETATM 31 C CMC BCL . . . P 6 -37.282 24.497 -9.002 1 43.69 ? CMC BCL 406 M 1 
HETATM 32 C CAC BCL . . . P 6 -40.304 25.438 -7.045 1 48.84 ? CAC BCL 406 M 1 
HETATM 33 C CBC BCL . . . P 6 -39.942 26.531 -6.084 1 47.21 ? CBC BCL 406 M 1 
HETATM 34 N ND BCL . . . P 6 -40.585 29.27 -10.612 1 45.93 ? ND BCL 406 M 1 
HETATM 35 C C1D BCL . . . P 6 -41.528 28.266 -10.346 1 47.04 ? C1D BCL 406 M 1 
HETATM 36 C C2D BCL . . . P 6 -42.819 28.602 -10.847 1 50.17 ? C2D BCL 406 M 1 
HETATM 37 C C3D BCL . . . P 6 -42.659 29.855 -11.461 1 51.11 ? C3D BCL 406 M 1 
HETATM 38 C C4D BCL . . . P 6 -41.314 30.219 -11.292 1 50.6 ? C4D BCL 406 M 1 
HETATM 39 C CMD BCL . . . P 6 -44.08 27.742 -10.713 1 47.96 ? CMD BCL 406 M 1 
HETATM 40 C CAD BCL . . . P 6 -43.273 30.872 -12.271 1 52.28 ? CAD BCL 406 M 1 
HETATM 41 O OBD BCL . . . P 6 -44.438 30.95 -12.786 1 54.51 ? OBD BCL 406 M 1 
HETATM 42 C CBD BCL . . . P 6 -42.235 32.013 -12.479 1 54.01 ? CBD BCL 406 M 1 
HETATM 43 C CGD BCL . . . P 6 -42.234 32.395 -13.897 1 57.87 ? CGD BCL 406 M 1 
HETATM 44 O O1D BCL . . . P 6 -42.756 33.382 -14.35 1 60.75 ? O1D BCL 406 M 1 
HETATM 45 O O2D BCL . . . P 6 -41.613 31.571 -14.713 1 58.18 ? O2D BCL 406 M 1 
HETATM 46 C CED BCL . . . P 6 -41.678 32.022 -16.089 1 56.13 ? CED BCL 406 M 1 
HETATM 47 C C1 BCL . . . P 6 -37.82 37.101 -7.248 1 59.56 ? C1 BCL 406 M 1 
HETATM 48 C C2 BCL . . . P 6 -37.154 38.264 -8.118 1 62.21 ? C2 BCL 406 M 1 
HETATM 49 C C3 BCL . . . P 6 -35.87 38.679 -8.038 1 66.82 ? C3 BCL 406 M 1 
HETATM 50 C C4 BCL . . . P 6 -35.146 39.767 -8.843 1 71.43 ? C4 BCL 406 M 1 
HETATM 51 C C5 BCL . . . P 6 -34.916 38.066 -7.05 1 70.14 ? C5 BCL 406 M 1 
#
_model_server_stats.io_time_ms              111 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           51 
#