data_8VTR # _model_server_result.job_id H3f8fyyvfHXU-m_MB_E60g _model_server_result.datetime_utc '2024-12-15 02:47:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vtr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8VTR # _exptl.entry_id 8VTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VTR _cell.length_a 73.199 _cell.length_b 74.275 _cell.length_c 93.335 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,M 1 1 B,E,F,G,H,I,J,K,L,N 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_544 -x+1/2,-y-1,z-1/2 -1 0 0 0 -1 0 0 0 1 36.5995 -74.275 -46.6675 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 23 1_555 A SG CYS 96 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 143 A CYS 154 1_555 A SG CYS 199 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 23 G CYS 23 1_555 B SG CYS 88 G CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 B SG CYS 134 G CYS 154 1_555 B SG CYS 194 G CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 266 n n C1 C2 PEG sing 267 n n C1 H11 PEG sing 268 n n C1 H12 PEG sing 269 n n O1 HO1 PEG sing 270 n n C2 O2 PEG sing 271 n n C2 H21 PEG sing 272 n n C2 H22 PEG sing 273 n n O2 C3 PEG sing 274 n n C3 C4 PEG sing 275 n n C3 H31 PEG sing 276 n n C3 H32 PEG sing 277 n n C4 O4 PEG sing 278 n n C4 H41 PEG sing 279 n n C4 H42 PEG sing 280 n n O4 HO4 PEG sing 281 n n # _atom_sites.entry_id 8VTR _atom_sites.fract_transf_matrix[1][1] 0.013661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PEG A 1 301 301 PEG PEG . D 4 EDO A 1 302 302 EDO EDO . E 4 EDO G 1 301 301 EDO EDO . F 3 PEG G 1 302 302 PEG PEG . G 4 EDO G 1 303 303 EDO EDO . H 4 EDO G 1 304 304 EDO EDO . I 4 EDO G 1 305 305 EDO EDO . J 5 CIT G 1 306 306 CIT CIT . K 6 CL G 1 307 307 CL CL . L 6 CL G 1 308 308 CL CL . M 7 HOH A 1 401 401 HOH HOH . M 7 HOH A 2 402 402 HOH HOH . M 7 HOH A 3 403 403 HOH HOH . M 7 HOH A 4 404 404 HOH HOH . M 7 HOH A 5 405 405 HOH HOH . M 7 HOH A 6 406 406 HOH HOH . M 7 HOH A 7 407 407 HOH HOH . M 7 HOH A 8 408 439 HOH HOH . M 7 HOH A 9 409 408 HOH HOH . M 7 HOH A 10 410 409 HOH HOH . M 7 HOH A 11 411 410 HOH HOH . M 7 HOH A 12 412 411 HOH HOH . M 7 HOH A 13 413 412 HOH HOH . M 7 HOH A 14 414 413 HOH HOH . M 7 HOH A 15 415 414 HOH HOH . M 7 HOH A 16 416 415 HOH HOH . M 7 HOH A 17 417 416 HOH HOH . M 7 HOH A 18 418 417 HOH HOH . M 7 HOH A 19 419 418 HOH HOH . M 7 HOH A 20 420 419 HOH HOH . M 7 HOH A 21 421 420 HOH HOH . M 7 HOH A 22 422 421 HOH HOH . M 7 HOH A 23 423 422 HOH HOH . M 7 HOH A 24 424 423 HOH HOH . M 7 HOH A 25 425 424 HOH HOH . M 7 HOH A 26 426 425 HOH HOH . M 7 HOH A 27 427 426 HOH HOH . M 7 HOH A 28 428 427 HOH HOH . M 7 HOH A 29 429 428 HOH HOH . M 7 HOH A 30 430 429 HOH HOH . M 7 HOH A 31 431 430 HOH HOH . M 7 HOH A 32 432 431 HOH HOH . M 7 HOH A 33 433 432 HOH HOH . M 7 HOH A 34 434 433 HOH HOH . M 7 HOH A 35 435 434 HOH HOH . M 7 HOH A 36 436 435 HOH HOH . M 7 HOH A 37 437 436 HOH HOH . M 7 HOH A 38 438 437 HOH HOH . M 7 HOH A 39 439 438 HOH HOH . M 7 HOH A 40 440 440 HOH HOH . M 7 HOH A 41 441 441 HOH HOH . M 7 HOH A 42 442 442 HOH HOH . M 7 HOH A 43 443 443 HOH HOH . M 7 HOH A 44 444 444 HOH HOH . M 7 HOH A 45 445 445 HOH HOH . M 7 HOH A 46 446 446 HOH HOH . M 7 HOH A 47 447 447 HOH HOH . M 7 HOH A 48 448 448 HOH HOH . M 7 HOH A 49 449 449 HOH HOH . M 7 HOH A 50 450 450 HOH HOH . M 7 HOH A 51 451 451 HOH HOH . M 7 HOH A 52 452 452 HOH HOH . M 7 HOH A 53 453 453 HOH HOH . M 7 HOH A 54 454 454 HOH HOH . M 7 HOH A 55 455 455 HOH HOH . M 7 HOH A 56 456 456 HOH HOH . M 7 HOH A 57 457 457 HOH HOH . M 7 HOH A 58 458 458 HOH HOH . M 7 HOH A 59 459 459 HOH HOH . M 7 HOH A 60 460 460 HOH HOH . M 7 HOH A 61 461 461 HOH HOH . M 7 HOH A 62 462 462 HOH HOH . M 7 HOH A 63 463 463 HOH HOH . M 7 HOH A 64 464 464 HOH HOH . M 7 HOH A 65 465 465 HOH HOH . M 7 HOH A 66 466 467 HOH HOH . M 7 HOH A 67 467 468 HOH HOH . M 7 HOH A 68 468 469 HOH HOH . M 7 HOH A 69 469 471 HOH HOH . M 7 HOH A 70 470 470 HOH HOH . M 7 HOH A 71 471 472 HOH HOH . M 7 HOH A 72 472 473 HOH HOH . M 7 HOH A 73 473 474 HOH HOH . M 7 HOH A 74 474 466 HOH HOH . M 7 HOH A 75 475 475 HOH HOH . M 7 HOH A 76 476 476 HOH HOH . M 7 HOH A 77 477 477 HOH HOH . M 7 HOH A 78 478 478 HOH HOH . M 7 HOH A 79 479 479 HOH HOH . M 7 HOH A 80 480 480 HOH HOH . M 7 HOH A 81 481 481 HOH HOH . M 7 HOH A 82 482 482 HOH HOH . M 7 HOH A 83 483 483 HOH HOH . M 7 HOH A 84 484 484 HOH HOH . M 7 HOH A 85 485 485 HOH HOH . M 7 HOH A 86 486 486 HOH HOH . M 7 HOH A 87 487 487 HOH HOH . M 7 HOH A 88 488 488 HOH HOH . M 7 HOH A 89 489 489 HOH HOH . M 7 HOH A 90 490 490 HOH HOH . M 7 HOH A 91 491 491 HOH HOH . M 7 HOH A 92 492 492 HOH HOH . M 7 HOH A 93 493 493 HOH HOH . M 7 HOH A 94 494 494 HOH HOH . M 7 HOH A 95 495 495 HOH HOH . M 7 HOH A 96 496 496 HOH HOH . M 7 HOH A 97 497 497 HOH HOH . M 7 HOH A 98 498 498 HOH HOH . M 7 HOH A 99 499 499 HOH HOH . M 7 HOH A 100 500 500 HOH HOH . M 7 HOH A 101 501 501 HOH HOH . M 7 HOH A 102 502 502 HOH HOH . M 7 HOH A 103 503 503 HOH HOH . M 7 HOH A 104 504 504 HOH HOH . M 7 HOH A 105 505 505 HOH HOH . M 7 HOH A 106 506 506 HOH HOH . M 7 HOH A 107 507 507 HOH HOH . M 7 HOH A 108 508 508 HOH HOH . M 7 HOH A 109 509 509 HOH HOH . M 7 HOH A 110 510 510 HOH HOH . M 7 HOH A 111 511 511 HOH HOH . M 7 HOH A 112 512 512 HOH HOH . M 7 HOH A 113 513 513 HOH HOH . M 7 HOH A 114 514 514 HOH HOH . M 7 HOH A 115 515 515 HOH HOH . M 7 HOH A 116 516 516 HOH HOH . M 7 HOH A 117 517 517 HOH HOH . M 7 HOH A 118 518 518 HOH HOH . M 7 HOH A 119 519 519 HOH HOH . M 7 HOH A 120 520 520 HOH HOH . M 7 HOH A 121 521 521 HOH HOH . M 7 HOH A 122 522 522 HOH HOH . M 7 HOH A 123 523 523 HOH HOH . M 7 HOH A 124 524 524 HOH HOH . N 7 HOH G 1 401 401 HOH HOH . N 7 HOH G 2 402 402 HOH HOH . N 7 HOH G 3 403 403 HOH HOH . N 7 HOH G 4 404 404 HOH HOH . N 7 HOH G 5 405 405 HOH HOH . N 7 HOH G 6 406 406 HOH HOH . N 7 HOH G 7 407 407 HOH HOH . N 7 HOH G 8 408 408 HOH HOH . N 7 HOH G 9 409 409 HOH HOH . N 7 HOH G 10 410 410 HOH HOH . N 7 HOH G 11 411 411 HOH HOH . N 7 HOH G 12 412 412 HOH HOH . N 7 HOH G 13 413 413 HOH HOH . N 7 HOH G 14 414 414 HOH HOH . N 7 HOH G 15 415 415 HOH HOH . N 7 HOH G 16 416 416 HOH HOH . N 7 HOH G 17 417 417 HOH HOH . N 7 HOH G 18 418 418 HOH HOH . N 7 HOH G 19 419 419 HOH HOH . N 7 HOH G 20 420 420 HOH HOH . N 7 HOH G 21 421 421 HOH HOH . N 7 HOH G 22 422 422 HOH HOH . N 7 HOH G 23 423 423 HOH HOH . N 7 HOH G 24 424 424 HOH HOH . N 7 HOH G 25 425 425 HOH HOH . N 7 HOH G 26 426 426 HOH HOH . N 7 HOH G 27 427 427 HOH HOH . N 7 HOH G 28 428 428 HOH HOH . N 7 HOH G 29 429 429 HOH HOH . N 7 HOH G 30 430 430 HOH HOH . N 7 HOH G 31 431 431 HOH HOH . N 7 HOH G 32 432 432 HOH HOH . N 7 HOH G 33 433 433 HOH HOH . N 7 HOH G 34 434 434 HOH HOH . N 7 HOH G 35 435 435 HOH HOH . N 7 HOH G 36 436 436 HOH HOH . N 7 HOH G 37 437 437 HOH HOH . N 7 HOH G 38 438 438 HOH HOH . N 7 HOH G 39 439 439 HOH HOH . N 7 HOH G 40 440 440 HOH HOH . N 7 HOH G 41 441 441 HOH HOH . N 7 HOH G 42 442 442 HOH HOH . N 7 HOH G 43 443 443 HOH HOH . N 7 HOH G 44 444 444 HOH HOH . N 7 HOH G 45 445 445 HOH HOH . N 7 HOH G 46 446 446 HOH HOH . N 7 HOH G 47 447 447 HOH HOH . N 7 HOH G 48 448 448 HOH HOH . N 7 HOH G 49 449 449 HOH HOH . N 7 HOH G 50 450 450 HOH HOH . N 7 HOH G 51 451 451 HOH HOH . N 7 HOH G 52 452 452 HOH HOH . N 7 HOH G 53 453 453 HOH HOH . N 7 HOH G 54 454 454 HOH HOH . N 7 HOH G 55 455 455 HOH HOH . N 7 HOH G 56 456 456 HOH HOH . N 7 HOH G 57 457 457 HOH HOH . N 7 HOH G 58 458 458 HOH HOH . N 7 HOH G 59 459 459 HOH HOH . N 7 HOH G 60 460 460 HOH HOH . N 7 HOH G 61 461 461 HOH HOH . N 7 HOH G 62 462 462 HOH HOH . N 7 HOH G 63 463 463 HOH HOH . N 7 HOH G 64 464 464 HOH HOH . N 7 HOH G 65 465 465 HOH HOH . N 7 HOH G 66 466 466 HOH HOH . N 7 HOH G 67 467 467 HOH HOH . N 7 HOH G 68 468 468 HOH HOH . N 7 HOH G 69 469 469 HOH HOH . N 7 HOH G 70 470 470 HOH HOH . N 7 HOH G 71 471 471 HOH HOH . N 7 HOH G 72 472 472 HOH HOH . N 7 HOH G 73 473 473 HOH HOH . N 7 HOH G 74 474 474 HOH HOH . N 7 HOH G 75 475 475 HOH HOH . N 7 HOH G 76 476 476 HOH HOH . N 7 HOH G 77 477 477 HOH HOH . N 7 HOH G 78 478 478 HOH HOH . N 7 HOH G 79 479 479 HOH HOH . N 7 HOH G 80 480 480 HOH HOH . N 7 HOH G 81 481 481 HOH HOH . N 7 HOH G 82 482 482 HOH HOH . N 7 HOH G 83 483 483 HOH HOH . N 7 HOH G 84 484 484 HOH HOH . N 7 HOH G 85 485 485 HOH HOH . N 7 HOH G 86 486 486 HOH HOH . N 7 HOH G 87 487 487 HOH HOH . N 7 HOH G 88 488 488 HOH HOH . N 7 HOH G 89 489 489 HOH HOH . N 7 HOH G 90 490 490 HOH HOH . N 7 HOH G 91 491 491 HOH HOH . N 7 HOH G 92 492 492 HOH HOH . N 7 HOH G 93 493 493 HOH HOH . N 7 HOH G 94 494 494 HOH HOH . N 7 HOH G 95 495 495 HOH HOH . N 7 HOH G 96 496 496 HOH HOH . N 7 HOH G 97 497 497 HOH HOH . N 7 HOH G 98 498 498 HOH HOH . N 7 HOH G 99 499 499 HOH HOH . N 7 HOH G 100 500 500 HOH HOH . N 7 HOH G 101 501 501 HOH HOH . N 7 HOH G 102 502 502 HOH HOH . N 7 HOH G 103 503 503 HOH HOH . N 7 HOH G 104 504 504 HOH HOH . N 7 HOH G 105 505 505 HOH HOH . N 7 HOH G 106 506 506 HOH HOH . N 7 HOH G 107 507 507 HOH HOH . N 7 HOH G 108 508 508 HOH HOH . N 7 HOH G 109 509 509 HOH HOH . N 7 HOH G 110 510 510 HOH HOH . N 7 HOH G 111 511 511 HOH HOH . N 7 HOH G 112 512 512 HOH HOH . N 7 HOH G 113 513 513 HOH HOH . N 7 HOH G 114 514 514 HOH HOH . N 7 HOH G 115 515 515 HOH HOH . N 7 HOH G 116 516 516 HOH HOH . N 7 HOH G 117 517 517 HOH HOH . N 7 HOH G 118 518 518 HOH HOH . N 7 HOH G 119 519 519 HOH HOH . N 7 HOH G 120 520 520 HOH HOH . N 7 HOH G 121 521 521 HOH HOH . N 7 HOH G 122 522 522 HOH HOH . N 7 HOH G 123 523 523 HOH HOH . N 7 HOH G 124 524 524 HOH HOH . N 7 HOH G 125 525 525 HOH HOH . N 7 HOH G 126 526 526 HOH HOH . N 7 HOH G 127 527 527 HOH HOH . N 7 HOH G 128 528 528 HOH HOH . N 7 HOH G 129 529 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 17.379 -4.058 0.408 1 50.31 ? C1 PEG 301 A 1 HETATM 2 O O1 PEG . . . C 3 18.132 -2.85 0.426 1 56.02 ? O1 PEG 301 A 1 HETATM 3 C C2 PEG . . . C 3 16.313 -4.055 1.462 1 50.91 ? C2 PEG 301 A 1 HETATM 4 O O2 PEG . . . C 3 15.646 -5.313 1.48 1 48.46 ? O2 PEG 301 A 1 HETATM 5 C C3 PEG . . . C 3 14.29 -5.21 1.069 1 37.03 ? C3 PEG 301 A 1 HETATM 6 C C4 PEG . . . C 3 13.377 -5.074 2.248 1 46.82 ? C4 PEG 301 A 1 HETATM 7 O O4 PEG . . . C 3 12.11 -4.55 1.856 1 52.49 ? O4 PEG 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #