data_8VUG
#
_model_server_result.job_id            Vo37vaed-HvB2foVUftTSw 
_model_server_result.datetime_utc      '2024-11-15 03:07:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8vug 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":403}' 
#
_entry.id    8VUG 
#
_exptl.entry_id    8VUG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              331.414 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5P)-5-(1H-indol-3-yl)-1-[(piperidin-4-yl)methyl]-1H-benzotriazole 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8VUG 
_cell.length_a            143.805 
_cell.length_b            154.925 
_cell.length_c            88.32 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8VUG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C20 H21 N5' 
_chem_comp.formula_weight    331.414 
_chem_comp.id                A1AD1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5P)-5-(1H-indol-3-yl)-1-[(piperidin-4-yl)methyl]-1H-benzotriazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C15 A1AD1 sing 1 n n 
C14 C13 A1AD1 sing 2 n n 
C12 C13 A1AD1 sing 3 n n 
C12 N3 A1AD1 sing 4 n n 
N4 C15 A1AD1 sing 5 n n 
N4 C16 A1AD1 sing 6 n n 
N2 N3 A1AD1 sing 7 n y 
N2 N1 A1AD1 doub 8 n y 
C17 C13 A1AD1 sing 9 n n 
C17 C16 A1AD1 sing 10 n n 
N3 C9 A1AD1 sing 11 n y 
N1 C10 A1AD1 sing 12 n y 
C9 C10 A1AD1 doub 13 n y 
C9 C8 A1AD1 sing 14 n y 
C10 C11 A1AD1 sing 15 n y 
C8 C7 A1AD1 doub 16 n y 
C11 C6 A1AD1 doub 17 n y 
C7 C6 A1AD1 sing 18 n y 
C6 C5 A1AD1 sing 19 n n 
C5 C18 A1AD1 doub 20 n y 
C5 C4 A1AD1 sing 21 n y 
C18 N5 A1AD1 sing 22 n y 
C4 C3 A1AD1 sing 23 n y 
C4 C19 A1AD1 doub 24 n y 
C3 C2 A1AD1 doub 25 n y 
N5 C19 A1AD1 sing 26 n y 
C19 C20 A1AD1 sing 27 n y 
C2 C1 A1AD1 sing 28 n y 
C20 C1 A1AD1 doub 29 n y 
C1 H1 A1AD1 sing 30 n n 
C2 H2 A1AD1 sing 31 n n 
C3 H3 A1AD1 sing 32 n n 
C7 H4 A1AD1 sing 33 n n 
C8 H5 A1AD1 sing 34 n n 
C11 H6 A1AD1 sing 35 n n 
C12 H8 A1AD1 sing 36 n n 
C12 H7 A1AD1 sing 37 n n 
C13 H9 A1AD1 sing 38 n n 
C14 H11 A1AD1 sing 39 n n 
C14 H10 A1AD1 sing 40 n n 
C15 H12 A1AD1 sing 41 n n 
C15 H13 A1AD1 sing 42 n n 
N4 H14 A1AD1 sing 43 n n 
C16 H15 A1AD1 sing 44 n n 
C16 H16 A1AD1 sing 45 n n 
C17 H18 A1AD1 sing 46 n n 
C17 H17 A1AD1 sing 47 n n 
C18 H19 A1AD1 sing 48 n n 
N5 H20 A1AD1 sing 49 n n 
C20 H21 A1AD1 sing 50 n n 
#
_atom_sites.entry_id                     8VUG 
_atom_sites.fract_transf_matrix[1][1]    0.006954 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 ZIQ A 1 402 402 ZIQ ZIQ . 
G 4 A1AD1 A 1 403 403 A1AD1 19d . 
H 2 HEM B 1 401 401 HEM HEM . 
I 3 ZIQ B 1 402 402 ZIQ ZIQ . 
J 4 A1AD1 B 1 403 403 A1AD1 19d . 
K 2 HEM C 1 401 401 HEM HEM . 
L 3 ZIQ C 1 402 402 ZIQ ZIQ . 
M 4 A1AD1 C 1 403 403 A1AD1 19d . 
N 2 HEM D 1 401 401 HEM HEM . 
O 3 ZIQ D 1 402 402 ZIQ ZIQ . 
P 4 A1AD1 D 1 403 403 A1AD1 19d . 
Q 5 HOH A 1 501 109 HOH HOH . 
Q 5 HOH A 2 502 87 HOH HOH . 
Q 5 HOH A 3 503 104 HOH HOH . 
Q 5 HOH A 4 504 117 HOH HOH . 
Q 5 HOH A 5 505 26 HOH HOH . 
Q 5 HOH A 6 506 68 HOH HOH . 
Q 5 HOH A 7 507 73 HOH HOH . 
Q 5 HOH A 8 508 83 HOH HOH . 
Q 5 HOH A 9 509 107 HOH HOH . 
Q 5 HOH A 10 510 45 HOH HOH . 
Q 5 HOH A 11 511 54 HOH HOH . 
Q 5 HOH A 12 512 102 HOH HOH . 
Q 5 HOH A 13 513 123 HOH HOH . 
Q 5 HOH A 14 514 112 HOH HOH . 
Q 5 HOH A 15 515 57 HOH HOH . 
Q 5 HOH A 16 516 51 HOH HOH . 
Q 5 HOH A 17 517 23 HOH HOH . 
Q 5 HOH A 18 518 32 HOH HOH . 
Q 5 HOH A 19 519 48 HOH HOH . 
Q 5 HOH A 20 520 110 HOH HOH . 
Q 5 HOH A 21 521 1 HOH HOH . 
Q 5 HOH A 22 522 120 HOH HOH . 
Q 5 HOH A 23 523 11 HOH HOH . 
Q 5 HOH A 24 524 84 HOH HOH . 
Q 5 HOH A 25 525 3 HOH HOH . 
Q 5 HOH A 26 526 94 HOH HOH . 
Q 5 HOH A 27 527 46 HOH HOH . 
Q 5 HOH A 28 528 10 HOH HOH . 
Q 5 HOH A 29 529 24 HOH HOH . 
Q 5 HOH A 30 530 19 HOH HOH . 
Q 5 HOH A 31 531 27 HOH HOH . 
Q 5 HOH A 32 532 22 HOH HOH . 
Q 5 HOH A 33 533 41 HOH HOH . 
Q 5 HOH A 34 534 49 HOH HOH . 
Q 5 HOH A 35 535 89 HOH HOH . 
Q 5 HOH A 36 536 65 HOH HOH . 
Q 5 HOH A 37 537 108 HOH HOH . 
Q 5 HOH A 38 538 74 HOH HOH . 
Q 5 HOH A 39 539 85 HOH HOH . 
Q 5 HOH A 40 540 55 HOH HOH . 
Q 5 HOH A 41 541 34 HOH HOH . 
Q 5 HOH A 42 542 90 HOH HOH . 
Q 5 HOH A 43 543 2 HOH HOH . 
Q 5 HOH A 44 544 119 HOH HOH . 
R 5 HOH B 1 501 18 HOH HOH . 
R 5 HOH B 2 502 21 HOH HOH . 
R 5 HOH B 3 503 75 HOH HOH . 
R 5 HOH B 4 504 31 HOH HOH . 
R 5 HOH B 5 505 114 HOH HOH . 
R 5 HOH B 6 506 69 HOH HOH . 
R 5 HOH B 7 507 8 HOH HOH . 
R 5 HOH B 8 508 122 HOH HOH . 
R 5 HOH B 9 509 9 HOH HOH . 
R 5 HOH B 10 510 76 HOH HOH . 
R 5 HOH B 11 511 96 HOH HOH . 
R 5 HOH B 12 512 81 HOH HOH . 
R 5 HOH B 13 513 82 HOH HOH . 
R 5 HOH B 14 514 30 HOH HOH . 
R 5 HOH B 15 515 64 HOH HOH . 
R 5 HOH B 16 516 116 HOH HOH . 
R 5 HOH B 17 517 86 HOH HOH . 
R 5 HOH B 18 518 70 HOH HOH . 
R 5 HOH B 19 519 100 HOH HOH . 
R 5 HOH B 20 520 101 HOH HOH . 
R 5 HOH B 21 521 56 HOH HOH . 
R 5 HOH B 22 522 77 HOH HOH . 
R 5 HOH B 23 523 93 HOH HOH . 
R 5 HOH B 24 524 95 HOH HOH . 
R 5 HOH B 25 525 52 HOH HOH . 
R 5 HOH B 26 526 16 HOH HOH . 
R 5 HOH B 27 527 13 HOH HOH . 
R 5 HOH B 28 528 58 HOH HOH . 
R 5 HOH B 29 529 50 HOH HOH . 
R 5 HOH B 30 530 79 HOH HOH . 
R 5 HOH B 31 531 15 HOH HOH . 
R 5 HOH B 32 532 72 HOH HOH . 
R 5 HOH B 33 533 91 HOH HOH . 
S 5 HOH C 1 501 111 HOH HOH . 
S 5 HOH C 2 502 7 HOH HOH . 
S 5 HOH C 3 503 12 HOH HOH . 
S 5 HOH C 4 504 25 HOH HOH . 
S 5 HOH C 5 505 40 HOH HOH . 
S 5 HOH C 6 506 17 HOH HOH . 
S 5 HOH C 7 507 37 HOH HOH . 
S 5 HOH C 8 508 103 HOH HOH . 
S 5 HOH C 9 509 59 HOH HOH . 
S 5 HOH C 10 510 80 HOH HOH . 
S 5 HOH C 11 511 35 HOH HOH . 
S 5 HOH C 12 512 78 HOH HOH . 
S 5 HOH C 13 513 71 HOH HOH . 
S 5 HOH C 14 514 99 HOH HOH . 
S 5 HOH C 15 515 67 HOH HOH . 
S 5 HOH C 16 516 42 HOH HOH . 
S 5 HOH C 17 517 62 HOH HOH . 
S 5 HOH C 18 518 66 HOH HOH . 
S 5 HOH C 19 519 4 HOH HOH . 
S 5 HOH C 20 520 125 HOH HOH . 
T 5 HOH D 1 501 115 HOH HOH . 
T 5 HOH D 2 502 118 HOH HOH . 
T 5 HOH D 3 503 5 HOH HOH . 
T 5 HOH D 4 504 43 HOH HOH . 
T 5 HOH D 5 505 113 HOH HOH . 
T 5 HOH D 6 506 106 HOH HOH . 
T 5 HOH D 7 507 14 HOH HOH . 
T 5 HOH D 8 508 33 HOH HOH . 
T 5 HOH D 9 509 28 HOH HOH . 
T 5 HOH D 10 510 47 HOH HOH . 
T 5 HOH D 11 511 105 HOH HOH . 
T 5 HOH D 12 512 20 HOH HOH . 
T 5 HOH D 13 513 36 HOH HOH . 
T 5 HOH D 14 514 97 HOH HOH . 
T 5 HOH D 15 515 98 HOH HOH . 
T 5 HOH D 16 516 60 HOH HOH . 
T 5 HOH D 17 517 44 HOH HOH . 
T 5 HOH D 18 518 121 HOH HOH . 
T 5 HOH D 19 519 63 HOH HOH . 
T 5 HOH D 20 520 53 HOH HOH . 
T 5 HOH D 21 521 61 HOH HOH . 
T 5 HOH D 22 522 29 HOH HOH . 
T 5 HOH D 23 523 39 HOH HOH . 
T 5 HOH D 24 524 38 HOH HOH . 
T 5 HOH D 25 525 6 HOH HOH . 
T 5 HOH D 26 526 88 HOH HOH . 
T 5 HOH D 27 527 92 HOH HOH . 
T 5 HOH D 28 528 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A1AD1 . . . M 4 -26.095 55.718 -18.56 1 76.11 ? C1 A1AD1 403 C 1 
HETATM 2 C C2 A1AD1 . . . M 4 -27.065 56.671 -18.286 1 77.96 ? C2 A1AD1 403 C 1 
HETATM 3 C C3 A1AD1 . . . M 4 -28.333 56.299 -17.899 1 83.26 ? C3 A1AD1 403 C 1 
HETATM 4 C C4 A1AD1 . . . M 4 -28.64 54.939 -17.788 1 79.93 ? C4 A1AD1 403 C 1 
HETATM 5 C C5 A1AD1 . . . M 4 -29.818 54.191 -17.419 1 82.91 ? C5 A1AD1 403 C 1 
HETATM 6 C C6 A1AD1 . . . M 4 -31.132 54.724 -17.02 1 88.87 ? C6 A1AD1 403 C 1 
HETATM 7 C C7 A1AD1 . . . M 4 -32.317 54.308 -17.692 1 94.05 ? C7 A1AD1 403 C 1 
HETATM 8 C C8 A1AD1 . . . M 4 -33.561 54.784 -17.334 1 95.27 ? C8 A1AD1 403 C 1 
HETATM 9 C C9 A1AD1 . . . M 4 -33.623 55.689 -16.279 1 97.8 ? C9 A1AD1 403 C 1 
HETATM 10 C C10 A1AD1 . . . M 4 -32.477 56.106 -15.6 1 93.88 ? C10 A1AD1 403 C 1 
HETATM 11 C C11 A1AD1 . . . M 4 -31.217 55.617 -15.982 1 85.59 ? C11 A1AD1 403 C 1 
HETATM 12 N N1 A1AD1 . . . M 4 -32.856 56.992 -14.619 1 95.07 ? N1 A1AD1 403 C 1 
HETATM 13 N N2 A1AD1 . . . M 4 -34.152 57.104 -14.656 1 97.36 ? N2 A1AD1 403 C 1 
HETATM 14 N N3 A1AD1 . . . M 4 -34.645 56.345 -15.659 1 101.56 ? N3 A1AD1 403 C 1 
HETATM 15 C C12 A1AD1 . . . M 4 -36.073 56.322 -15.919 1 111.63 ? C12 A1AD1 403 C 1 
HETATM 16 C C13 A1AD1 . . . M 4 -36.468 57.166 -17.134 1 119.23 ? C13 A1AD1 403 C 1 
HETATM 17 C C14 A1AD1 . . . M 4 -36.97 56.275 -18.274 1 120.32 ? C14 A1AD1 403 C 1 
HETATM 18 C C15 A1AD1 . . . M 4 -37.586 57.056 -19.414 1 124.48 ? C15 A1AD1 403 C 1 
HETATM 19 N N4 A1AD1 . . . M 4 -38.633 57.96 -18.918 1 128.83 ? N4 A1AD1 403 C 1 
HETATM 20 C C16 A1AD1 . . . M 4 -38.098 58.927 -17.948 1 124.46 ? C16 A1AD1 403 C 1 
HETATM 21 C C17 A1AD1 . . . M 4 -37.525 58.201 -16.749 1 124.22 ? C17 A1AD1 403 C 1 
HETATM 22 C C18 A1AD1 . . . M 4 -29.473 52.86 -17.504 1 80.32 ? C18 A1AD1 403 C 1 
HETATM 23 N N5 A1AD1 . . . M 4 -28.176 52.742 -17.893 1 79.59 ? N5 A1AD1 403 C 1 
HETATM 24 C C19 A1AD1 . . . M 4 -27.636 53.997 -18.073 1 74.82 ? C19 A1AD1 403 C 1 
HETATM 25 C C20 A1AD1 . . . M 4 -26.355 54.373 -18.459 1 73.98 ? C20 A1AD1 403 C 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#