data_8VUI # _model_server_result.job_id oWyDO9kRVqQ4KQGrbZHaaQ _model_server_result.datetime_utc '2024-10-24 06:18:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 8VUI # _exptl.entry_id 8VUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VUI _cell.length_a 56.39 _cell.length_b 71.93 _cell.length_c 197.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 23 1_555 A SG CYS 96 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 143 A CYS 154 1_555 A SG CYS 199 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 23 G CYS 23 1_555 B SG CYS 88 G CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 B SG CYS 134 G CYS 154 1_555 B SG CYS 194 G CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 C SG CYS 28 D CYS 28 1_555 C SG CYS 38 D CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf6 C SG CYS 67 D CYS 67 1_555 C SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 C ND2 ASN 52 D ASN 52 1_555 N C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A O VAL 5 A VAL 5 1_555 E NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc2 A OG SER 7 A SER 7 1_555 E NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc3 A O LEU 192 A LEU 203 1_555 F NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc4 A O GLN 195 A GLN 206 1_555 F NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc5 F NA NA . A NA 303 1_555 S O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc6 B O ALA 111 G ALA 131 1_555 L NA NA . G NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc7 B O TYR 140 G TYR 160 1_555 L NA NA . G NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc8 B OG1 THR 164 G THR 184 1_555 K NA NA . G NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc9 B O GLU 165 G GLU 185 1_555 K NA NA . G NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc10 B OE1 GLN 198 G GLN 218 1_555 L NA NA . G NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc11 K NA NA . G NA 303 1_555 T O HOH . G HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 8VUI _atom_sites.fract_transf_matrix[1][1] 0.017734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 301 EDO EDO . E 5 NA A 1 302 302 NA NA . F 5 NA A 1 303 303 NA NA . G 6 CL A 1 304 304 CL CL . H 6 CL A 1 305 305 CL CL . I 4 EDO G 1 301 301 EDO EDO . J 4 EDO G 1 302 302 EDO EDO . K 5 NA G 1 303 303 NA NA . L 5 NA G 1 304 304 NA NA . M 6 CL G 1 305 305 CL CL . N 7 NAG D 1 301 301 NAG NAG . O 8 CIT D 1 302 302 CIT CIT . P 9 NH4 D 1 303 303 NH4 NH4 . Q 6 CL D 1 304 304 CL CL . R 6 CL D 1 305 305 CL CL . S 10 HOH A 1 401 401 HOH HOH . S 10 HOH A 2 402 402 HOH HOH . S 10 HOH A 3 403 403 HOH HOH . S 10 HOH A 4 404 404 HOH HOH . S 10 HOH A 5 405 405 HOH HOH . S 10 HOH A 6 406 406 HOH HOH . S 10 HOH A 7 407 407 HOH HOH . S 10 HOH A 8 408 408 HOH HOH . S 10 HOH A 9 409 409 HOH HOH . S 10 HOH A 10 410 410 HOH HOH . S 10 HOH A 11 411 411 HOH HOH . S 10 HOH A 12 412 412 HOH HOH . S 10 HOH A 13 413 413 HOH HOH . S 10 HOH A 14 414 414 HOH HOH . S 10 HOH A 15 415 415 HOH HOH . S 10 HOH A 16 416 416 HOH HOH . S 10 HOH A 17 417 417 HOH HOH . S 10 HOH A 18 418 418 HOH HOH . S 10 HOH A 19 419 419 HOH HOH . S 10 HOH A 20 420 420 HOH HOH . S 10 HOH A 21 421 421 HOH HOH . S 10 HOH A 22 422 422 HOH HOH . S 10 HOH A 23 423 423 HOH HOH . S 10 HOH A 24 424 424 HOH HOH . S 10 HOH A 25 425 425 HOH HOH . S 10 HOH A 26 426 426 HOH HOH . S 10 HOH A 27 427 427 HOH HOH . S 10 HOH A 28 428 428 HOH HOH . S 10 HOH A 29 429 429 HOH HOH . S 10 HOH A 30 430 430 HOH HOH . S 10 HOH A 31 431 431 HOH HOH . S 10 HOH A 32 432 432 HOH HOH . S 10 HOH A 33 433 433 HOH HOH . S 10 HOH A 34 434 434 HOH HOH . S 10 HOH A 35 435 435 HOH HOH . S 10 HOH A 36 436 436 HOH HOH . S 10 HOH A 37 437 437 HOH HOH . S 10 HOH A 38 438 438 HOH HOH . S 10 HOH A 39 439 439 HOH HOH . S 10 HOH A 40 440 440 HOH HOH . S 10 HOH A 41 441 441 HOH HOH . S 10 HOH A 42 442 442 HOH HOH . S 10 HOH A 43 443 443 HOH HOH . S 10 HOH A 44 444 444 HOH HOH . S 10 HOH A 45 445 445 HOH HOH . S 10 HOH A 46 446 446 HOH HOH . S 10 HOH A 47 447 447 HOH HOH . S 10 HOH A 48 448 448 HOH HOH . S 10 HOH A 49 449 449 HOH HOH . S 10 HOH A 50 450 450 HOH HOH . S 10 HOH A 51 451 451 HOH HOH . S 10 HOH A 52 452 452 HOH HOH . S 10 HOH A 53 453 453 HOH HOH . S 10 HOH A 54 454 454 HOH HOH . S 10 HOH A 55 455 455 HOH HOH . S 10 HOH A 56 456 456 HOH HOH . S 10 HOH A 57 457 457 HOH HOH . S 10 HOH A 58 458 458 HOH HOH . S 10 HOH A 59 459 459 HOH HOH . S 10 HOH A 60 460 460 HOH HOH . S 10 HOH A 61 461 461 HOH HOH . S 10 HOH A 62 462 462 HOH HOH . S 10 HOH A 63 463 463 HOH HOH . S 10 HOH A 64 464 464 HOH HOH . S 10 HOH A 65 465 465 HOH HOH . S 10 HOH A 66 466 466 HOH HOH . S 10 HOH A 67 467 467 HOH HOH . S 10 HOH A 68 468 468 HOH HOH . S 10 HOH A 69 469 469 HOH HOH . S 10 HOH A 70 470 470 HOH HOH . S 10 HOH A 71 471 471 HOH HOH . S 10 HOH A 72 472 472 HOH HOH . S 10 HOH A 73 473 473 HOH HOH . S 10 HOH A 74 474 474 HOH HOH . S 10 HOH A 75 475 475 HOH HOH . S 10 HOH A 76 476 476 HOH HOH . S 10 HOH A 77 477 477 HOH HOH . S 10 HOH A 78 478 478 HOH HOH . T 10 HOH G 1 401 401 HOH HOH . T 10 HOH G 2 402 402 HOH HOH . T 10 HOH G 3 403 403 HOH HOH . T 10 HOH G 4 404 404 HOH HOH . T 10 HOH G 5 405 405 HOH HOH . T 10 HOH G 6 406 406 HOH HOH . T 10 HOH G 7 407 407 HOH HOH . T 10 HOH G 8 408 408 HOH HOH . T 10 HOH G 9 409 409 HOH HOH . T 10 HOH G 10 410 410 HOH HOH . T 10 HOH G 11 411 411 HOH HOH . T 10 HOH G 12 412 412 HOH HOH . T 10 HOH G 13 413 413 HOH HOH . T 10 HOH G 14 414 414 HOH HOH . T 10 HOH G 15 415 415 HOH HOH . T 10 HOH G 16 416 416 HOH HOH . T 10 HOH G 17 417 417 HOH HOH . T 10 HOH G 18 418 418 HOH HOH . T 10 HOH G 19 419 419 HOH HOH . T 10 HOH G 20 420 420 HOH HOH . T 10 HOH G 21 421 421 HOH HOH . T 10 HOH G 22 422 422 HOH HOH . T 10 HOH G 23 423 423 HOH HOH . T 10 HOH G 24 424 424 HOH HOH . T 10 HOH G 25 425 425 HOH HOH . T 10 HOH G 26 426 426 HOH HOH . T 10 HOH G 27 427 427 HOH HOH . T 10 HOH G 28 428 428 HOH HOH . T 10 HOH G 29 429 429 HOH HOH . T 10 HOH G 30 430 430 HOH HOH . T 10 HOH G 31 431 431 HOH HOH . T 10 HOH G 32 432 432 HOH HOH . T 10 HOH G 33 433 433 HOH HOH . T 10 HOH G 34 434 434 HOH HOH . T 10 HOH G 35 435 435 HOH HOH . T 10 HOH G 36 436 436 HOH HOH . T 10 HOH G 37 437 437 HOH HOH . T 10 HOH G 38 438 438 HOH HOH . T 10 HOH G 39 439 439 HOH HOH . T 10 HOH G 40 440 440 HOH HOH . T 10 HOH G 41 441 441 HOH HOH . T 10 HOH G 42 442 442 HOH HOH . T 10 HOH G 43 443 443 HOH HOH . T 10 HOH G 44 444 444 HOH HOH . T 10 HOH G 45 445 445 HOH HOH . T 10 HOH G 46 446 446 HOH HOH . T 10 HOH G 47 447 447 HOH HOH . T 10 HOH G 48 448 448 HOH HOH . T 10 HOH G 49 449 449 HOH HOH . T 10 HOH G 50 450 450 HOH HOH . T 10 HOH G 51 451 451 HOH HOH . T 10 HOH G 52 452 452 HOH HOH . T 10 HOH G 53 453 453 HOH HOH . T 10 HOH G 54 454 454 HOH HOH . T 10 HOH G 55 455 455 HOH HOH . T 10 HOH G 56 456 456 HOH HOH . T 10 HOH G 57 457 457 HOH HOH . T 10 HOH G 58 458 458 HOH HOH . T 10 HOH G 59 459 459 HOH HOH . T 10 HOH G 60 460 460 HOH HOH . T 10 HOH G 61 461 461 HOH HOH . T 10 HOH G 62 462 462 HOH HOH . T 10 HOH G 63 463 463 HOH HOH . T 10 HOH G 64 464 464 HOH HOH . T 10 HOH G 65 465 465 HOH HOH . T 10 HOH G 66 466 466 HOH HOH . T 10 HOH G 67 467 467 HOH HOH . T 10 HOH G 68 468 468 HOH HOH . T 10 HOH G 69 469 469 HOH HOH . T 10 HOH G 70 470 470 HOH HOH . T 10 HOH G 71 471 471 HOH HOH . T 10 HOH G 72 472 472 HOH HOH . T 10 HOH G 73 473 473 HOH HOH . T 10 HOH G 74 474 474 HOH HOH . T 10 HOH G 75 475 475 HOH HOH . T 10 HOH G 76 476 476 HOH HOH . T 10 HOH G 77 477 477 HOH HOH . T 10 HOH G 78 478 478 HOH HOH . T 10 HOH G 79 479 479 HOH HOH . T 10 HOH G 80 480 480 HOH HOH . T 10 HOH G 81 481 481 HOH HOH . T 10 HOH G 82 482 482 HOH HOH . T 10 HOH G 83 483 483 HOH HOH . T 10 HOH G 84 484 484 HOH HOH . T 10 HOH G 85 485 485 HOH HOH . T 10 HOH G 86 486 486 HOH HOH . T 10 HOH G 87 487 487 HOH HOH . T 10 HOH G 88 488 488 HOH HOH . T 10 HOH G 89 489 489 HOH HOH . T 10 HOH G 90 490 490 HOH HOH . T 10 HOH G 91 491 491 HOH HOH . T 10 HOH G 92 492 492 HOH HOH . T 10 HOH G 93 493 493 HOH HOH . T 10 HOH G 94 494 494 HOH HOH . T 10 HOH G 95 495 495 HOH HOH . T 10 HOH G 96 496 496 HOH HOH . T 10 HOH G 97 497 497 HOH HOH . T 10 HOH G 98 498 498 HOH HOH . T 10 HOH G 99 499 499 HOH HOH . T 10 HOH G 100 500 500 HOH HOH . T 10 HOH G 101 501 501 HOH HOH . T 10 HOH G 102 502 502 HOH HOH . T 10 HOH G 103 503 503 HOH HOH . T 10 HOH G 104 504 504 HOH HOH . T 10 HOH G 105 505 505 HOH HOH . U 10 HOH D 1 401 401 HOH HOH . U 10 HOH D 2 402 402 HOH HOH . U 10 HOH D 3 403 403 HOH HOH . U 10 HOH D 4 404 404 HOH HOH . U 10 HOH D 5 405 405 HOH HOH . U 10 HOH D 6 406 406 HOH HOH . U 10 HOH D 7 407 407 HOH HOH . U 10 HOH D 8 408 408 HOH HOH . U 10 HOH D 9 409 409 HOH HOH . U 10 HOH D 10 410 410 HOH HOH . U 10 HOH D 11 411 411 HOH HOH . U 10 HOH D 12 412 412 HOH HOH . U 10 HOH D 13 413 413 HOH HOH . U 10 HOH D 14 414 414 HOH HOH . U 10 HOH D 15 415 415 HOH HOH . U 10 HOH D 16 416 416 HOH HOH . U 10 HOH D 17 417 417 HOH HOH . U 10 HOH D 18 418 418 HOH HOH . U 10 HOH D 19 419 419 HOH HOH . U 10 HOH D 20 420 420 HOH HOH . U 10 HOH D 21 421 421 HOH HOH . U 10 HOH D 22 422 422 HOH HOH . U 10 HOH D 23 423 423 HOH HOH . U 10 HOH D 24 424 424 HOH HOH . U 10 HOH D 25 425 425 HOH HOH . U 10 HOH D 26 426 426 HOH HOH . U 10 HOH D 27 427 427 HOH HOH . U 10 HOH D 28 428 428 HOH HOH . U 10 HOH D 29 429 429 HOH HOH . U 10 HOH D 30 430 430 HOH HOH . U 10 HOH D 31 431 431 HOH HOH . U 10 HOH D 32 432 432 HOH HOH . U 10 HOH D 33 433 433 HOH HOH . U 10 HOH D 34 434 434 HOH HOH . U 10 HOH D 35 435 435 HOH HOH . U 10 HOH D 36 436 436 HOH HOH . U 10 HOH D 37 437 437 HOH HOH . U 10 HOH D 38 438 438 HOH HOH . U 10 HOH D 39 439 439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 -16.509 -16.913 16.029 1 43.72 ? C1 EDO 302 G 1 HETATM 2 O O1 EDO . . . J 4 -15.385 -16.895 16.94 1 42.34 ? O1 EDO 302 G 1 HETATM 3 C C2 EDO . . . J 4 -16.101 -17.29 14.595 1 46.55 ? C2 EDO 302 G 1 HETATM 4 O O2 EDO . . . J 4 -15.698 -18.672 14.481 1 52.33 ? O2 EDO 302 G 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #