data_8VW1 # _model_server_result.job_id sVy2-CYDJb3rIhLbvVEYQw _model_server_result.datetime_utc '2024-12-02 01:56:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8vw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 8VW1 # _exptl.entry_id 8VW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8VW1 _cell.length_a 58.47 _cell.length_b 69.235 _cell.length_c 100.468 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8VW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 198 A ALA 198 1_555 A N KCX 199 A KCX 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C KCX 199 A KCX 199 1_555 A N LEU 200 A LEU 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OE2 GLU 158 A GLU 158 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 B O1B ADP . A ADP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 C MG MG . A MG 502 1_555 K O HOH . A HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc4 D MG MG . A MG 503 1_555 K O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 D MG MG . A MG 503 1_555 K O HOH . A HOH 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc6 D MG MG . A MG 503 1_555 K O HOH . A HOH 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc7 D MG MG . A MG 503 1_555 K O HOH . A HOH 797 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc8 D MG MG . A MG 503 1_555 K O HOH . A HOH 806 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc9 E MG MG . A MG 504 1_555 K O HOH . A HOH 605 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc10 E MG MG . A MG 504 1_555 K O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc11 E MG MG . A MG 504 1_555 K O HOH . A HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc12 E MG MG . A MG 504 1_555 K O HOH . A HOH 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc13 E MG MG . A MG 504 1_555 K O HOH . A HOH 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc14 H CA CA . A CA 507 1_555 K O HOH . A HOH 789 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8VW1 _atom_sites.fract_transf_matrix[1][1] 0.017103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 502 ADP ADP . C 3 MG A 1 502 2 MG MG . D 3 MG A 1 503 3 MG MG . E 3 MG A 1 504 4 MG MG . F 4 CA A 1 505 1 CA CA . G 4 CA A 1 506 2 CA CA . H 4 CA A 1 507 3 CA CA . I 5 MPD A 1 508 501 MPD MPD . J 6 DMS A 1 509 501 DMS DMS . K 7 HOH A 1 601 219 HOH HOH . K 7 HOH A 2 602 196 HOH HOH . K 7 HOH A 3 603 159 HOH HOH . K 7 HOH A 4 604 138 HOH HOH . K 7 HOH A 5 605 212 HOH HOH . K 7 HOH A 6 606 215 HOH HOH . K 7 HOH A 7 607 98 HOH HOH . K 7 HOH A 8 608 172 HOH HOH . K 7 HOH A 9 609 154 HOH HOH . K 7 HOH A 10 610 148 HOH HOH . K 7 HOH A 11 611 158 HOH HOH . K 7 HOH A 12 612 92 HOH HOH . K 7 HOH A 13 613 109 HOH HOH . K 7 HOH A 14 614 30 HOH HOH . K 7 HOH A 15 615 55 HOH HOH . K 7 HOH A 16 616 139 HOH HOH . K 7 HOH A 17 617 132 HOH HOH . K 7 HOH A 18 618 153 HOH HOH . K 7 HOH A 19 619 72 HOH HOH . K 7 HOH A 20 620 168 HOH HOH . K 7 HOH A 21 621 33 HOH HOH . K 7 HOH A 22 622 46 HOH HOH . K 7 HOH A 23 623 15 HOH HOH . K 7 HOH A 24 624 221 HOH HOH . K 7 HOH A 25 625 114 HOH HOH . K 7 HOH A 26 626 171 HOH HOH . K 7 HOH A 27 627 12 HOH HOH . K 7 HOH A 28 628 137 HOH HOH . K 7 HOH A 29 629 56 HOH HOH . K 7 HOH A 30 630 58 HOH HOH . K 7 HOH A 31 631 40 HOH HOH . K 7 HOH A 32 632 7 HOH HOH . K 7 HOH A 33 633 77 HOH HOH . K 7 HOH A 34 634 17 HOH HOH . K 7 HOH A 35 635 64 HOH HOH . K 7 HOH A 36 636 102 HOH HOH . K 7 HOH A 37 637 200 HOH HOH . K 7 HOH A 38 638 36 HOH HOH . K 7 HOH A 39 639 62 HOH HOH . K 7 HOH A 40 640 156 HOH HOH . K 7 HOH A 41 641 112 HOH HOH . K 7 HOH A 42 642 181 HOH HOH . K 7 HOH A 43 643 161 HOH HOH . K 7 HOH A 44 644 43 HOH HOH . K 7 HOH A 45 645 11 HOH HOH . K 7 HOH A 46 646 13 HOH HOH . K 7 HOH A 47 647 71 HOH HOH . K 7 HOH A 48 648 128 HOH HOH . K 7 HOH A 49 649 37 HOH HOH . K 7 HOH A 50 650 220 HOH HOH . K 7 HOH A 51 651 183 HOH HOH . K 7 HOH A 52 652 192 HOH HOH . K 7 HOH A 53 653 79 HOH HOH . K 7 HOH A 54 654 69 HOH HOH . K 7 HOH A 55 655 32 HOH HOH . K 7 HOH A 56 656 16 HOH HOH . K 7 HOH A 57 657 8 HOH HOH . K 7 HOH A 58 658 95 HOH HOH . K 7 HOH A 59 659 76 HOH HOH . K 7 HOH A 60 660 107 HOH HOH . K 7 HOH A 61 661 131 HOH HOH . K 7 HOH A 62 662 65 HOH HOH . K 7 HOH A 63 663 141 HOH HOH . K 7 HOH A 64 664 27 HOH HOH . K 7 HOH A 65 665 103 HOH HOH . K 7 HOH A 66 666 50 HOH HOH . K 7 HOH A 67 667 207 HOH HOH . K 7 HOH A 68 668 129 HOH HOH . K 7 HOH A 69 669 118 HOH HOH . K 7 HOH A 70 670 2 HOH HOH . K 7 HOH A 71 671 190 HOH HOH . K 7 HOH A 72 672 84 HOH HOH . K 7 HOH A 73 673 176 HOH HOH . K 7 HOH A 74 674 104 HOH HOH . K 7 HOH A 75 675 142 HOH HOH . K 7 HOH A 76 676 81 HOH HOH . K 7 HOH A 77 677 38 HOH HOH . K 7 HOH A 78 678 57 HOH HOH . K 7 HOH A 79 679 39 HOH HOH . K 7 HOH A 80 680 78 HOH HOH . K 7 HOH A 81 681 45 HOH HOH . K 7 HOH A 82 682 21 HOH HOH . K 7 HOH A 83 683 68 HOH HOH . K 7 HOH A 84 684 90 HOH HOH . K 7 HOH A 85 685 20 HOH HOH . K 7 HOH A 86 686 74 HOH HOH . K 7 HOH A 87 687 42 HOH HOH . K 7 HOH A 88 688 214 HOH HOH . K 7 HOH A 89 689 204 HOH HOH . K 7 HOH A 90 690 9 HOH HOH . K 7 HOH A 91 691 188 HOH HOH . K 7 HOH A 92 692 202 HOH HOH . K 7 HOH A 93 693 51 HOH HOH . K 7 HOH A 94 694 175 HOH HOH . K 7 HOH A 95 695 59 HOH HOH . K 7 HOH A 96 696 185 HOH HOH . K 7 HOH A 97 697 10 HOH HOH . K 7 HOH A 98 698 165 HOH HOH . K 7 HOH A 99 699 5 HOH HOH . K 7 HOH A 100 700 146 HOH HOH . K 7 HOH A 101 701 121 HOH HOH . K 7 HOH A 102 702 25 HOH HOH . K 7 HOH A 103 703 108 HOH HOH . K 7 HOH A 104 704 96 HOH HOH . K 7 HOH A 105 705 193 HOH HOH . K 7 HOH A 106 706 34 HOH HOH . K 7 HOH A 107 707 82 HOH HOH . K 7 HOH A 108 708 182 HOH HOH . K 7 HOH A 109 709 47 HOH HOH . K 7 HOH A 110 710 120 HOH HOH . K 7 HOH A 111 711 164 HOH HOH . K 7 HOH A 112 712 130 HOH HOH . K 7 HOH A 113 713 115 HOH HOH . K 7 HOH A 114 714 66 HOH HOH . K 7 HOH A 115 715 197 HOH HOH . K 7 HOH A 116 716 23 HOH HOH . K 7 HOH A 117 717 143 HOH HOH . K 7 HOH A 118 718 49 HOH HOH . K 7 HOH A 119 719 24 HOH HOH . K 7 HOH A 120 720 170 HOH HOH . K 7 HOH A 121 721 167 HOH HOH . K 7 HOH A 122 722 41 HOH HOH . K 7 HOH A 123 723 94 HOH HOH . K 7 HOH A 124 724 100 HOH HOH . K 7 HOH A 125 725 67 HOH HOH . K 7 HOH A 126 726 60 HOH HOH . K 7 HOH A 127 727 31 HOH HOH . K 7 HOH A 128 728 53 HOH HOH . K 7 HOH A 129 729 147 HOH HOH . K 7 HOH A 130 730 18 HOH HOH . K 7 HOH A 131 731 178 HOH HOH . K 7 HOH A 132 732 189 HOH HOH . K 7 HOH A 133 733 86 HOH HOH . K 7 HOH A 134 734 70 HOH HOH . K 7 HOH A 135 735 186 HOH HOH . K 7 HOH A 136 736 80 HOH HOH . K 7 HOH A 137 737 48 HOH HOH . K 7 HOH A 138 738 101 HOH HOH . K 7 HOH A 139 739 117 HOH HOH . K 7 HOH A 140 740 140 HOH HOH . K 7 HOH A 141 741 203 HOH HOH . K 7 HOH A 142 742 187 HOH HOH . K 7 HOH A 143 743 4 HOH HOH . K 7 HOH A 144 744 35 HOH HOH . K 7 HOH A 145 745 162 HOH HOH . K 7 HOH A 146 746 106 HOH HOH . K 7 HOH A 147 747 14 HOH HOH . K 7 HOH A 148 748 216 HOH HOH . K 7 HOH A 149 749 122 HOH HOH . K 7 HOH A 150 750 184 HOH HOH . K 7 HOH A 151 751 6 HOH HOH . K 7 HOH A 152 752 73 HOH HOH . K 7 HOH A 153 753 85 HOH HOH . K 7 HOH A 154 754 126 HOH HOH . K 7 HOH A 155 755 123 HOH HOH . K 7 HOH A 156 756 113 HOH HOH . K 7 HOH A 157 757 191 HOH HOH . K 7 HOH A 158 758 44 HOH HOH . K 7 HOH A 159 759 157 HOH HOH . K 7 HOH A 160 760 22 HOH HOH . K 7 HOH A 161 761 160 HOH HOH . K 7 HOH A 162 762 209 HOH HOH . K 7 HOH A 163 763 93 HOH HOH . K 7 HOH A 164 764 136 HOH HOH . K 7 HOH A 165 765 54 HOH HOH . K 7 HOH A 166 766 19 HOH HOH . K 7 HOH A 167 767 26 HOH HOH . K 7 HOH A 168 768 110 HOH HOH . K 7 HOH A 169 769 149 HOH HOH . K 7 HOH A 170 770 179 HOH HOH . K 7 HOH A 171 771 29 HOH HOH . K 7 HOH A 172 772 173 HOH HOH . K 7 HOH A 173 773 144 HOH HOH . K 7 HOH A 174 774 152 HOH HOH . K 7 HOH A 175 775 217 HOH HOH . K 7 HOH A 176 776 61 HOH HOH . K 7 HOH A 177 777 97 HOH HOH . K 7 HOH A 178 778 1 HOH HOH . K 7 HOH A 179 779 119 HOH HOH . K 7 HOH A 180 780 52 HOH HOH . K 7 HOH A 181 781 91 HOH HOH . K 7 HOH A 182 782 206 HOH HOH . K 7 HOH A 183 783 180 HOH HOH . K 7 HOH A 184 784 87 HOH HOH . K 7 HOH A 185 785 125 HOH HOH . K 7 HOH A 186 786 89 HOH HOH . K 7 HOH A 187 787 198 HOH HOH . K 7 HOH A 188 788 177 HOH HOH . K 7 HOH A 189 789 150 HOH HOH . K 7 HOH A 190 790 28 HOH HOH . K 7 HOH A 191 791 3 HOH HOH . K 7 HOH A 192 792 83 HOH HOH . K 7 HOH A 193 793 210 HOH HOH . K 7 HOH A 194 794 135 HOH HOH . K 7 HOH A 195 795 163 HOH HOH . K 7 HOH A 196 796 116 HOH HOH . K 7 HOH A 197 797 205 HOH HOH . K 7 HOH A 198 798 174 HOH HOH . K 7 HOH A 199 799 194 HOH HOH . K 7 HOH A 200 800 111 HOH HOH . K 7 HOH A 201 801 88 HOH HOH . K 7 HOH A 202 802 127 HOH HOH . K 7 HOH A 203 803 195 HOH HOH . K 7 HOH A 204 804 105 HOH HOH . K 7 HOH A 205 805 201 HOH HOH . K 7 HOH A 206 806 151 HOH HOH . K 7 HOH A 207 807 145 HOH HOH . K 7 HOH A 208 808 99 HOH HOH . K 7 HOH A 209 809 218 HOH HOH . K 7 HOH A 210 810 166 HOH HOH . K 7 HOH A 211 811 211 HOH HOH . K 7 HOH A 212 812 63 HOH HOH . K 7 HOH A 213 813 134 HOH HOH . K 7 HOH A 214 814 208 HOH HOH . K 7 HOH A 215 815 75 HOH HOH . K 7 HOH A 216 816 169 HOH HOH . K 7 HOH A 217 817 124 HOH HOH . K 7 HOH A 218 818 155 HOH HOH . K 7 HOH A 219 819 133 HOH HOH . K 7 HOH A 220 820 213 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.522 _atom_site.Cartn_y -15.275 _atom_site.Cartn_z -18.084 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 507 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #